HHsearch alignment for GI: 254781076 and conserved domain: COG0164
>COG0164 RnhB Ribonuclease HII [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=430.82 Aligned_cols=184 Identities=52% Similarity=0.788 Sum_probs=174.6
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHCHHHHHH
Q ss_conf 899984278777522255999998701082--3311520289999987552110123-0788515679985204799988
Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATL 101 (209)
Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~~--~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~~~~eID~~ni~~A~~ 101 (209)
T Consensus 1 ~vaGIDEAGRGpl~GPvV~Aavil~~~~~~~~~Gl~DSKkLs~~kRe~L~~~I~~~a~~~~v~~~~~~~Id~~ni~~a~~ 80 (199)
T COG0164 1 LVAGVDEAGRGPLAGPVVAAAVILPPDRLPKKLGLKDSKKLSPKKREELFEEIKEKALAWGVGIIPAEEIDELNILEATK 80 (199)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 92760577867752622589999773223334586652307999999999999865227999972789886742999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 65432100257532110126532246621226871147865200236666547758999999988777988102899999
Q gi|254781076|r 102 DAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 (209)
Q Consensus 102 ~a~~~ai~~l~~~~~~ilIDg~~~~~~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~~p~Ygf~~nkGYgT 181 (209)
T Consensus 81 ~am~~av~~l~~~~~~vlvD~~~~~~~l~~~~~a~~KgDa~~~~IaAASIvAKV~RDr~m~~l~~~yp~Y~~~~~~GY~T 160 (199)
T COG0164 81 LAMRRAVAGLSSQPDLVLVDGNDLPLGLPQPAVAIIKGDAKSPSIAAASILAKVTRDRLMEELAKEYPEYGFDKGSGYPT 160 (199)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999998266668889981788642378776034535311378999999999999999999986586767625787798
Q ss_pred HHHHHHHHHCCCCC-CCCCCHHHHHHHC
Q ss_conf 89999999828583-0107848886403
Q gi|254781076|r 182 AKHQQVIKEKGPSC-IHRLTFRPLRNLS 208 (209)
Q Consensus 182 ~~H~~ai~~~G~~~-~HR~Sf~~vk~l~ 208 (209)
T Consensus 161 ~~h~~a~~~~~~~~~~hR~Sf~~vk~~~ 188 (199)
T COG0164 161 DPHTEALLKKGGTPGIHRRSFAPVRRLL 188 (199)
T ss_pred HHHHHHHHHHCCCCCEEECCCHHHHHHH
T ss_conf 3999999985699862222428899874