HHsearch alignment for GI: 254781076 and conserved domain: PRK13926
>PRK13926 junction RNase; Provisional.
Probab=100.00 E-value=0 Score=492.97 Aligned_cols=200 Identities=36% Similarity=0.527 Sum_probs=190.7
Q ss_pred CCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEEC
Q ss_conf 7886888999999779948999842787775222559999987010823311520289999987552110123-078851
Q gi|254781076|r 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 (209)
Q Consensus 7 ~~~p~~~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~~~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~ 85 (209)
T Consensus 5 ~~~p~~~~E~~l~~~G~~~I~GVDEaGRG~laGPvvvaaVil~~~~~~~~~~DSKkLs~kkRe~l~~~I~~~~~~~~i~~ 84 (212)
T PRK13926 5 STMPDWALEREHWRRGLFRVAGVDEAGRGAWAGPITVAAVILPGTPGEYPFRDSKQLSPAARERLAAKVREVAVAWAVEH 84 (212)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEE
T ss_conf 89969799999998799719866576866553433479999788666357870353999999999999986412331366
Q ss_pred CCHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56799852047999886543210025753211012653224662122687114786520023666654775899999998
Q gi|254781076|r 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 (209)
Q Consensus 86 ~~~~eID~~ni~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~ 165 (209)
T Consensus 85 ~s~~eID~~nI~~At~~am~rai~~l~~~~~~v~~D~~~~~~--~~~~~~~~KGD~~~~~IAAASIiAKV~RD~~M~~l~ 162 (212)
T PRK13926 85 AWPEEIDRLNVLGATHAAAERALARLPPPPQALVTDYLRLRT--PLPLLAPPKADALSYSVAAASLLAKTERDRLMAELD 162 (212)
T ss_pred ECHHHHHHHCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 589998750709999999999998658887679856874799--988050278634433127889999999899999999
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHC
Q ss_conf 8777988102899999899999998285830107848886403
Q gi|254781076|r 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 (209)
Q Consensus 166 ~~~p~Ygf~~nkGYgT~~H~~ai~~~G~~~~HR~Sf~~vk~l~ 208 (209)
T Consensus 163 ~~yP~Ygf~~nkGYgTk~H~~ai~~~G~~~~HR~Sf~Pi~~~~ 205 (212)
T PRK13926 163 ALYPGYGFAAHKGYGAPAHRAALLALGVSEVHRRRYAPIAQLL 205 (212)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCHHHHHHH
T ss_conf 8787998200579782999999998495976768868799999