HHsearch alignment for GI: 254781076 and conserved domain: PRK13926

>PRK13926 junction RNase; Provisional.
Probab=100.00  E-value=0  Score=492.97  Aligned_cols=200  Identities=36%  Similarity=0.527  Sum_probs=190.7

Q ss_pred             CCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEEC
Q ss_conf             7886888999999779948999842787775222559999987010823311520289999987552110123-078851
Q gi|254781076|r    7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS   85 (209)
Q Consensus         7 ~~~p~~~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~~~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~   85 (209)
T Consensus         5 ~~~p~~~~E~~l~~~G~~~I~GVDEaGRG~laGPvvvaaVil~~~~~~~~~~DSKkLs~kkRe~l~~~I~~~~~~~~i~~   84 (212)
T PRK13926          5 STMPDWALEREHWRRGLFRVAGVDEAGRGAWAGPITVAAVILPGTPGEYPFRDSKQLSPAARERLAAKVREVAVAWAVEH   84 (212)
T ss_pred             CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEE
T ss_conf             89969799999998799719866576866553433479999788666357870353999999999999986412331366


Q ss_pred             CCHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56799852047999886543210025753211012653224662122687114786520023666654775899999998
Q gi|254781076|r   86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH  165 (209)
Q Consensus        86 ~~~~eID~~ni~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~  165 (209)
T Consensus        85 ~s~~eID~~nI~~At~~am~rai~~l~~~~~~v~~D~~~~~~--~~~~~~~~KGD~~~~~IAAASIiAKV~RD~~M~~l~  162 (212)
T PRK13926         85 AWPEEIDRLNVLGATHAAAERALARLPPPPQALVTDYLRLRT--PLPLLAPPKADALSYSVAAASLLAKTERDRLMAELD  162 (212)
T ss_pred             ECHHHHHHHCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             589998750709999999999998658887679856874799--988050278634433127889999999899999999


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHC
Q ss_conf             8777988102899999899999998285830107848886403
Q gi|254781076|r  166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS  208 (209)
Q Consensus       166 ~~~p~Ygf~~nkGYgT~~H~~ai~~~G~~~~HR~Sf~~vk~l~  208 (209)
T Consensus       163 ~~yP~Ygf~~nkGYgTk~H~~ai~~~G~~~~HR~Sf~Pi~~~~  205 (212)
T PRK13926        163 ALYPGYGFAAHKGYGAPAHRAALLALGVSEVHRRRYAPIAQLL  205 (212)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCHHHHHHH
T ss_conf             8787998200579782999999998495976768868799999