>TIGR00716 rnhC ribonuclease HIII; InterPro: IPR004641 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This family describes bacterial RNase HIII .; GO: 0004523 ribonuclease H activity, 0016070 RNA metabolic process, 0005737 cytoplasm.

Probab=99.93 E-value=5.7e-26 Score=182.89 Aligned_cols=170 Identities=24% Similarity=0.352 Sum_probs=133.2 Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECC-CCCC----CCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHH---CH Q ss_conf 89998427877752225599999870-1082----3311520289999987552110123078851567998520---47 Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDP-NNIP----FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH---NI 96 (209) Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~-~~~~----~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~~---ni 96 (209) T Consensus 92 S~IG~DEsGkGD~FGpl~~~cvy~~~P~~~~~~~~l~~~DsK~l~D~~i~~la~nl~~l~~~~~~~lkpEkYN~ly~kf~ 171 (298) T TIGR00716 92 SVIGVDESGKGDYFGPLVVVCVYVDEPEALEKLKELSVKDSKRLKDKKILELARNLKKLVKAKVLVLKPEKYNKLYEKFR 171 (298) T ss_pred CEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHCC T ss_conf 23302456887634141688775187568899884688655558867899999987764122455753740378886002 Q ss_pred HHHHHHHHH--HHCCCC-----CCCCCCCCCCCCCCCCCC----------CEEEEEECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 999886543--210025-----753211012653224662----------122687114786520023666654775899 Q gi|254781076|r 97 HKATLDAIY--HAVENL-----QVIPRSALIDGRSIPEDL----------PCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 (209) Q Consensus 97 ~~A~~~a~~--~ai~~l-----~~~~~~ilIDg~~~~~~~----------~~~~~~i~KgD~~~~~VaaASIiAKv~RD~ 159 (209) T Consensus 172 nlnkm~a~~h~~~I~~l~~~~~Gv~Pe~~~~Dqfa~s~~~l~~~~~~~~~~~~~if~t~AE~i~laVAaASI~A---Ry~ 248 (298) T TIGR00716 172 NLNKMLALLHKLLIERLLKKEAGVKPEAVVVDQFAESERYLLQLKRKDIVDEEVIFETKAERIDLAVAAASILA---RYK 248 (298) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHH---HHH T ss_conf 65579999999999975111048985547872004733788864214200000022101253305777888999---999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHH---HHHCCCCCCC Q ss_conf 9999988777988102899999899999---9982858301 Q gi|254781076|r 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQV---IKEKGPSCIH 197 (209) Q Consensus 160 ~m~~l~~~~p~Ygf~~nkGYgT~~H~~a---i~~~G~~~~H 197 (209) T Consensus 249 FL~s~~~ler~~gi~lpKGas~~Vke~Ak~l~~~Kg~~~Le 289 (298) T TIGR00716 249 FLSSLKKLERELGIKLPKGASKKVKELAKELLLKKGAVVLE 289 (298) T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHH T ss_conf 99899998898486714899854899999997605844545

HHsearch alignment for GI: 254781076 and conserved domain: TIGR00716