HHsearch alignment for GI: 254781076 and conserved domain: pfam01351
>pfam01351 RNase_HII Ribonuclease HII.
Probab=100.00 E-value=0 Score=385.57 Aligned_cols=177 Identities=46% Similarity=0.674 Sum_probs=159.5
Q ss_pred EEEECCCCCCCCCCEEEEEEEECCCCCC----CCCCCCCCCCHHHHHHHHHHHCCCC------EEEEECCCHHHHHHHCH
Q ss_conf 9984278777522255999998701082----3311520289999987552110123------07885156799852047
Q gi|254781076|r 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA------IISISSASHQYIDKHNI 96 (209)
Q Consensus 27 iGvDEaGRG~~~GPlvvaav~~~~~~~~----~~i~DSK~Ls~~~R~~l~~~i~~~~------~~~i~~~~~~eID~~ni 96 (209)
T Consensus 1 aGiDEaGRG~~~GPlvvaav~l~~~~~~~l~~~gv~DSK~Ls~kkR~~l~~~I~~~~~~~~~~~~~i~~~~~~~id~~~i 80 (197)
T pfam01351 1 AGIDEVGRGPLAGPLVVAAVYLPPERLIELRKLGVKDSKKLSDKKREELAELIKKRIETRKLVAGNIKYAEANEINLNNI 80 (197)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCEEEEEEEECHHHHCHHHH
T ss_conf 99877587676022068999980221556664332022017999999999999974101110244556603756269999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9998865432100257532110126532246621------2268711478652002366665477589999999887779
Q gi|254781076|r 97 HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 (209)
Q Consensus 97 ~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~~~~------~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~~p~ 170 (209)
T Consensus 81 ~~a~~~~~~~~l~~~~~~~~~i~vD~~~~~~~~~~~~~~~~~~~~~~KaD~~~~~VAAASIlAKv~RD~~i~-~~~~~p~ 159 (197)
T pfam01351 81 LHALHLAMIRAVQKLGVKPDEILVDGFTPPKSLPMKQEAIFKVTAEHKADSKYLSVAAASIIAKVTRDEMLE-LLKRFPG 159 (197)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCC
T ss_conf 999999999999845999998998898894201222430257623232012203431437899999999999-9866879
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCC----CCCCCHHHH
Q ss_conf 8810289999989999999828583----010784888
Q gi|254781076|r 171 YGFDSHVGYPTAKHQQVIKEKGPSC----IHRLTFRPL 204 (209)
Q Consensus 171 Ygf~~nkGYgT~~H~~ai~~~G~~~----~HR~Sf~~v 204 (209)
T Consensus 160 y~f~~~~GY~t~~h~~~i~~~g~~~~~~~~hR~Sf~~v 197 (197)
T pfam01351 160 YGLDKGSGYPSDPHTEALLKLGATPWLPDFHRRSFATV 197 (197)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99624868498999999999682999884126888897