HHsearch alignment for GI: 254781076 and conserved domain: pfam01351

>pfam01351 RNase_HII Ribonuclease HII.
Probab=100.00  E-value=0  Score=385.57  Aligned_cols=177  Identities=46%  Similarity=0.674  Sum_probs=159.5

Q ss_pred             EEEECCCCCCCCCCEEEEEEEECCCCCC----CCCCCCCCCCHHHHHHHHHHHCCCC------EEEEECCCHHHHHHHCH
Q ss_conf             9984278777522255999998701082----3311520289999987552110123------07885156799852047
Q gi|254781076|r   27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA------IISISSASHQYIDKHNI   96 (209)
Q Consensus        27 iGvDEaGRG~~~GPlvvaav~~~~~~~~----~~i~DSK~Ls~~~R~~l~~~i~~~~------~~~i~~~~~~eID~~ni   96 (209)
T Consensus         1 aGiDEaGRG~~~GPlvvaav~l~~~~~~~l~~~gv~DSK~Ls~kkR~~l~~~I~~~~~~~~~~~~~i~~~~~~~id~~~i   80 (197)
T pfam01351         1 AGIDEVGRGPLAGPLVVAAVYLPPERLIELRKLGVKDSKKLSDKKREELAELIKKRIETRKLVAGNIKYAEANEINLNNI   80 (197)
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCEEEEEEEECHHHHCHHHH
T ss_conf             99877587676022068999980221556664332022017999999999999974101110244556603756269999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9998865432100257532110126532246621------2268711478652002366665477589999999887779
Q gi|254781076|r   97 HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD  170 (209)
Q Consensus        97 ~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~~~~------~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~~p~  170 (209)
T Consensus        81 ~~a~~~~~~~~l~~~~~~~~~i~vD~~~~~~~~~~~~~~~~~~~~~~KaD~~~~~VAAASIlAKv~RD~~i~-~~~~~p~  159 (197)
T pfam01351        81 LHALHLAMIRAVQKLGVKPDEILVDGFTPPKSLPMKQEAIFKVTAEHKADSKYLSVAAASIIAKVTRDEMLE-LLKRFPG  159 (197)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCC
T ss_conf             999999999999845999998998898894201222430257623232012203431437899999999999-9866879


Q ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCC----CCCCCHHHH
Q ss_conf             8810289999989999999828583----010784888
Q gi|254781076|r  171 YGFDSHVGYPTAKHQQVIKEKGPSC----IHRLTFRPL  204 (209)
Q Consensus       171 Ygf~~nkGYgT~~H~~ai~~~G~~~----~HR~Sf~~v  204 (209)
T Consensus       160 y~f~~~~GY~t~~h~~~i~~~g~~~~~~~~hR~Sf~~v  197 (197)
T pfam01351       160 YGLDKGSGYPSDPHTEALLKLGATPWLPDFHRRSFATV  197 (197)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             99624868498999999999682999884126888897