HHsearch alignment of GI: 254781076 and MMDB domain: 1i39_A_1-182
>1i39_A (A:1-182) Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus}
Probab=100.00 E-value=0 Score=318.82 Aligned_cols=165 Identities=30% Similarity=0.425 Sum_probs=152.9
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8868889999997799489998427877752225599999870108--23311520289999987552110123078851
Q gi|254781076|r 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85 (209)
Q Consensus 8 ~~p~~~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~--~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~ 85 (209)
.+|++++|+.|++.++.+++|+|||||||+|||||+|||+++++.. ..||+|||+||+++|++|++.|++++.|++..
T Consensus 4 ~~~~~~~e~~l~~~~~~~viG~DEaGrG~~~GPlvvaav~~~~~~~~~~~gv~DSK~Ls~~~r~~l~~~i~~~~~~~v~~ 83 (182)
T 1i39_A 4 SHHHHHHSSGLVPRGSHMKAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVLK 83 (182)
T ss_dssp -----------------CEEEEEEECTTCSBSCEEEEEEEESCHHHHHHTTCTTCTTCCHHHHHHHHHHHHHHEEEEEEE
T ss_pred CCCCCHHHHHHHHCCCEEEEEECCCCCCCCHHHEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEE
T ss_conf 53210125569877995899253888777220026999998631041316876343089999999999985200332666
Q ss_pred CCHHHHHHHCHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCC---------CCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 5679985204799988654321002--575321101265322466---------21226871147865200236666547
Q gi|254781076|r 86 ASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPED---------LPCQAFAVIKGDSISLSIAAASIIAK 154 (209)
Q Consensus 86 ~~~~eID~~ni~~A~~~a~~~ai~~--l~~~~~~ilIDg~~~~~~---------~~~~~~~i~KgD~~~~~VaaASIiAK 154 (209)
++|++||++|+.+++.++|.+++.+ ++..++.++|||+..++. .+.++.+++|||++|++|||||||||
T Consensus 84 i~p~~id~~~~~~~l~~~~~~~~~~~~~~~~~~~i~iD~~~~~~~~~~~l~~~~~~~~~~~~~Kad~~~~~VaaASIiAK 163 (182)
T 1i39_A 84 VSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAK 163 (182)
T ss_dssp ECHHHHHHHTTTSCHHHHHHHHHHHHHHHHCCSEEEEEESSSCCHHHHHHHHHHHCSEEEEEETGGGTCHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 43666788778999999999998776532587632036544573333023554304568999746644663207777669
Q ss_pred HHHHHHHHHHHHHCCCCC
Q ss_conf 758999999988777988
Q gi|254781076|r 155 VTRDRLMRIAHKKYPDYG 172 (209)
Q Consensus 155 v~RD~~m~~l~~~~p~Yg 172 (209)
|+||++|.+|+++||+||
T Consensus 164 v~rd~~m~~l~~~yp~yG 181 (182)
T 1i39_A 164 VEREREIERLKEKFGDFG 181 (182)
T ss_dssp HHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 999999999999776579