HHsearch alignment of GI: 254781076 and MMDB domain: 1io2_A_1-168
>1io2_A (A:1-168) Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis KOD1}
Probab=100.00 E-value=2.8e-45 Score=302.56 Aligned_cols=148 Identities=33% Similarity=0.548 Sum_probs=136.8
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCHHHHHHH--CHH
Q ss_conf 89998427877752225599999870108----23311520289999987552110123-078851567998520--479
Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKH--NIH 97 (209)
Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~~~~eID~~--ni~ 97 (209)
.|+|+|||||||+|||||+|||+++++.. ..|++|||+||+++|++|++.|++++ .|++.+++|+|||+. |++
T Consensus 2 ~iiGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gi~DSK~Ls~~~r~~l~~~i~~~~~~~~v~~~~~~~id~~~~nln 81 (168)
T 1io2_A 2 KIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLN 81 (168)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHTTGGGCTTCCHHHHHHHHHHHHTTCSEEEEEEECHHHHHTCSSCHH
T ss_pred EEEEECCCCCCCCCCCEEEEEEEECHHHCCHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 19824477877731000689999832534223304885322298989999999999887652000057999865688886
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998865432100257532110126532246-----------621226871147865200236666547758999999988
Q gi|254781076|r 98 KATLDAIYHAVENLQVIPRSALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 (209)
Q Consensus 98 ~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~-----------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~ 166 (209)
+++..+|.++++++..+++.++||++..+. ..+.++.+++|||++|++||||||+|||+||++|++|++
T Consensus 82 ~~~~~a~~~ai~~l~~~~~~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~KaD~~~~~VaAASIiAKv~rd~~m~~l~~ 161 (168)
T 1io2_A 82 EFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE 161 (168)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999836799999997876687301112103343554127986456433620108888989999999999999
Q ss_pred HCCCCC
Q ss_conf 777988
Q gi|254781076|r 167 KYPDYG 172 (209)
Q Consensus 167 ~~p~Yg 172 (209)
+||+||
T Consensus 162 ~yp~yG 167 (168)
T 1io2_A 162 EYGEIG 167 (168)
T ss_dssp HHSCCC
T ss_pred HCCCCC
T ss_conf 777469