HHsearch alignment of GI: 254781076 and MMDB domain: 2d0b_A_83-265
>2d0b_A (A:83-265) RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A
Probab=100.00 E-value=7.4e-43 Score=287.83 Aligned_cols=153 Identities=23% Similarity=0.279 Sum_probs=132.9
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 9997799489998427877752225599999870108----233115202899999875521101230788515679985
Q gi|254781076|r 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISISSASHQYID 92 (209)
Q Consensus 17 ~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID 92 (209)
.+++.+..+++|+|||||||+|||||+|||+++++.. ..||+|||+||+++|++|++.|++++.|.+..++|++||
T Consensus 2 ~~~~~~~~~iiGiDEaGrG~~~GPvvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~~~i~~~~id 81 (183)
T 2d0b_A 2 AAHQLGSLSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIMETVPHAVTVLDNPQYN 81 (183)
T ss_dssp HHHHHTTSCEEEEEEECTTCSBSCEEEEEEEECGGGHHHHHHTCCTTGGGCCHHHHHHHHHHHHHHSCEEEEEECHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCHH
T ss_conf 44436898889881778767300318999998556503566559973120889999999999997548899998323467
Q ss_pred HH-----CHHHHHHHHHHHHCCCCC-----CCCCCCCCCCCCCC-----------CCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 20-----479998865432100257-----53211012653224-----------6621226871147865200236666
Q gi|254781076|r 93 KH-----NIHKATLDAIYHAVENLQ-----VIPRSALIDGRSIP-----------EDLPCQAFAVIKGDSISLSIAAASI 151 (209)
Q Consensus 93 ~~-----ni~~A~~~a~~~ai~~l~-----~~~~~ilIDg~~~~-----------~~~~~~~~~i~KgD~~~~~VaaASI 151 (209)
++ |++..+..+|.++++.+. ..++.++|||+..+ ...+.++.+++|||+++++||||||
T Consensus 82 ~~~~~~~n~~~l~~~~~~~ai~~l~~~~~~~~~~~i~iD~~~~~~~~~~~l~~~~~~~~~~~~~~~KaD~~~~~VAAASI 161 (183)
T 2d0b_A 82 RWQRSGMPQTKMKALLHNRTLVKLVDAIAPAEPEAIIIDEFLKRDSYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASI 161 (183)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSCHHHHHHHTTTCSSCCCTTEEEETTGGGTCHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 77275126999999999999999998735788766613666781678877502356888864899646543166689999
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 547758999999988777
Q gi|254781076|r 152 IAKVTRDRLMRIAHKKYP 169 (209)
Q Consensus 152 iAKv~RD~~m~~l~~~~p 169 (209)
||||.||+.|.+|+++||
T Consensus 162 iAKv~rd~~m~~L~~~y~ 179 (183)
T 2d0b_A 162 IARYVFLEEMEQLSRAVG 179 (183)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999709