HHsearch alignment of GI: 254781076 and MMDB domain: 2d0b_A_83-265

>2d0b_A (A:83-265) RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A
Probab=100.00  E-value=7.4e-43  Score=287.83  Aligned_cols=153  Identities=23%  Similarity=0.279  Sum_probs=132.9

Q ss_pred             HHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf             9997799489998427877752225599999870108----233115202899999875521101230788515679985
Q gi|254781076|r   17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISISSASHQYID   92 (209)
Q Consensus        17 ~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID   92 (209)
                      .+++.+..+++|+|||||||+|||||+|||+++++..    ..||+|||+||+++|++|++.|++++.|.+..++|++||
T Consensus         2 ~~~~~~~~~iiGiDEaGrG~~~GPvvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~~~i~~~~id   81 (183)
T 2d0b_A            2 AAHQLGSLSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIMETVPHAVTVLDNPQYN   81 (183)
T ss_dssp             HHHHHTTSCEEEEEEECTTCSBSCEEEEEEEECGGGHHHHHHTCCTTGGGCCHHHHHHHHHHHHHHSCEEEEEECHHHHH
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCHH
T ss_conf             44436898889881778767300318999998556503566559973120889999999999997548899998323467


Q ss_pred             HH-----CHHHHHHHHHHHHCCCCC-----CCCCCCCCCCCCCC-----------CCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf             20-----479998865432100257-----53211012653224-----------6621226871147865200236666
Q gi|254781076|r   93 KH-----NIHKATLDAIYHAVENLQ-----VIPRSALIDGRSIP-----------EDLPCQAFAVIKGDSISLSIAAASI  151 (209)
Q Consensus        93 ~~-----ni~~A~~~a~~~ai~~l~-----~~~~~ilIDg~~~~-----------~~~~~~~~~i~KgD~~~~~VaaASI  151 (209)
                      ++     |++..+..+|.++++.+.     ..++.++|||+..+           ...+.++.+++|||+++++||||||
T Consensus        82 ~~~~~~~n~~~l~~~~~~~ai~~l~~~~~~~~~~~i~iD~~~~~~~~~~~l~~~~~~~~~~~~~~~KaD~~~~~VAAASI  161 (183)
T 2d0b_A           82 RWQRSGMPQTKMKALLHNRTLVKLVDAIAPAEPEAIIIDEFLKRDSYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASI  161 (183)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSCHHHHHHHTTTCSSCCCTTEEEETTGGGTCHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             77275126999999999999999998735788766613666781678877502356888864899646543166689999


Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             547758999999988777
Q gi|254781076|r  152 IAKVTRDRLMRIAHKKYP  169 (209)
Q Consensus       152 iAKv~RD~~m~~l~~~~p  169 (209)
                      ||||.||+.|.+|+++||
T Consensus       162 iAKv~rd~~m~~L~~~y~  179 (183)
T 2d0b_A          162 IARYVFLEEMEQLSRAVG  179 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999709