HHsearch results for GI: 254781076 and protein with PDBid: 1i39_A
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A
Probab=100.00 E-value=0 Score=356.13 Aligned_cols=196 Identities=27% Similarity=0.342 Sum_probs=156.5
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHH
Q ss_conf 89999997799489998427877752225599999870108--2331152028999998755211012307885156799
Q gi|254781076|r 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISSASHQY 90 (209)
Q Consensus 13 ~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~--~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~e 90 (209)
..-..|+.+|+..|+|+|||||||+|||||+|||+++++.. ..||+|||+||+++|+++++.|++.+.|++..++|++
T Consensus 9 ~~~~~l~~~g~~~viGiDEaGrG~~~GPvvv~av~~~~~~~~~~~gv~DSK~Ls~~kr~~l~~~I~~~~~~~i~~is~~~ 88 (225)
T 1i39_A 9 HHSSGLVPRGSHMKAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVLKVSPEN 88 (225)
T ss_dssp ------------CEEEEEEECTTCSBSCEEEEEEEESCHHHHHHTTCTTCTTCCHHHHHHHHHHHHHHEEEEEEEECHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 01556987799689814287867740213799999883430102377414339999999997665405311289965543
Q ss_pred HHHHCHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCC---------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 85204799988654321002--57532110126532246---------62122687114786520023666654775899
Q gi|254781076|r 91 IDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 (209)
Q Consensus 91 ID~~ni~~A~~~a~~~ai~~--l~~~~~~ilIDg~~~~~---------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~ 159 (209)
||+.|+.+++..+|.++..+ +...++.+++|+....+ ..++++.+++|||++|++||||||||||+||+
T Consensus 89 id~~~~~~~~n~~~~~a~~~~~~~l~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~KgD~k~~~VAAASIiAKv~RD~ 168 (225)
T 1i39_A 89 LDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVERER 168 (225)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHCCSEEEEEESSSCCHHHHHHHHHHHCSEEEEEETGGGTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHH
T ss_conf 34777799999999999999861479854786577656555323445466300699865765565310699999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHH-HHCCCCCCCCCCHHHHHHHC
Q ss_conf 99999887779881028999998999999-98285830107848886403
Q gi|254781076|r 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVI-KEKGPSCIHRLTFRPLRNLS 208 (209)
Q Consensus 160 ~m~~l~~~~p~Ygf~~nkGYgT~~H~~ai-~~~G~~~~HR~Sf~~vk~l~ 208 (209)
+|.+|++.||+|||..++||+|++|++.+ ..+|++.+||+||+|++++-
T Consensus 169 ~m~~l~~~yp~yg~Gy~s~~~t~~~l~~~~~~~~~~~~hR~sfk~~~~~~ 218 (225)
T 1i39_A 169 EIERLKEKFGDFGSGYASDPRTREVLKEWIASGRIPSCVRMRWKTVSNLR 218 (225)
T ss_dssp HHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHTCCCTTBCTTSHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 99999998799898778739999999998750999840049978799998