HHsearch results for GI: 254781076 and protein with PDBid: 1i39_A

>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A
Probab=100.00  E-value=0  Score=356.13  Aligned_cols=196  Identities=27%  Similarity=0.342  Sum_probs=156.5

Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHH
Q ss_conf             89999997799489998427877752225599999870108--2331152028999998755211012307885156799
Q gi|254781076|r   13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISSASHQY   90 (209)
Q Consensus        13 ~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~--~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~e   90 (209)
                      ..-..|+.+|+..|+|+|||||||+|||||+|||+++++..  ..||+|||+||+++|+++++.|++.+.|++..++|++
T Consensus         9 ~~~~~l~~~g~~~viGiDEaGrG~~~GPvvv~av~~~~~~~~~~~gv~DSK~Ls~~kr~~l~~~I~~~~~~~i~~is~~~   88 (225)
T 1i39_A            9 HHSSGLVPRGSHMKAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVLKVSPEN   88 (225)
T ss_dssp             ------------CEEEEEEECTTCSBSCEEEEEEEESCHHHHHHTTCTTCTTCCHHHHHHHHHHHHHHEEEEEEEECHHH
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             01556987799689814287867740213799999883430102377414339999999997665405311289965543


Q ss_pred             HHHHCHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCC---------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             85204799988654321002--57532110126532246---------62122687114786520023666654775899
Q gi|254781076|r   91 IDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDR  159 (209)
Q Consensus        91 ID~~ni~~A~~~a~~~ai~~--l~~~~~~ilIDg~~~~~---------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~  159 (209)
                      ||+.|+.+++..+|.++..+  +...++.+++|+....+         ..++++.+++|||++|++||||||||||+||+
T Consensus        89 id~~~~~~~~n~~~~~a~~~~~~~l~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~KgD~k~~~VAAASIiAKv~RD~  168 (225)
T 1i39_A           89 LDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVERER  168 (225)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHHCCSEEEEEESSSCCHHHHHHHHHHHCSEEEEEETGGGTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHH
T ss_conf             34777799999999999999861479854786577656555323445466300699865765565310699999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHH-HHCCCCCCCCCCHHHHHHHC
Q ss_conf             99999887779881028999998999999-98285830107848886403
Q gi|254781076|r  160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVI-KEKGPSCIHRLTFRPLRNLS  208 (209)
Q Consensus       160 ~m~~l~~~~p~Ygf~~nkGYgT~~H~~ai-~~~G~~~~HR~Sf~~vk~l~  208 (209)
                      +|.+|++.||+|||..++||+|++|++.+ ..+|++.+||+||+|++++-
T Consensus       169 ~m~~l~~~yp~yg~Gy~s~~~t~~~l~~~~~~~~~~~~hR~sfk~~~~~~  218 (225)
T 1i39_A          169 EIERLKEKFGDFGSGYASDPRTREVLKEWIASGRIPSCVRMRWKTVSNLR  218 (225)
T ss_dssp             HHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHTCCCTTBCTTSHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             99999998799898778739999999998750999840049978799998