PSIBLAST alignment of GI: 254781076 and protein with PDB id: 1uax

gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus Horikoshii Ot3 Length = 220
>gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus Horikoshii Ot3 Length = 220
 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 28/206 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK-ITSSAI 80
           VAG+DE GRG + GP+V+   ++D  NI      G+ DSK+++  +RE+L+ K I     
Sbjct: 3   VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDD 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED------------ 128
             +   + + ID+ +     L+A    V    +  +   I   S   D            
Sbjct: 63  YYVLLVTPKEIDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGL 122

Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186
                  A  K D+    ++AASIIAKVTRDR +    +KY ++G     GYP+  + ++
Sbjct: 123 KYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFG----SGYPSDPRTKE 178

Query: 187 VI----KEKG-PSCIHRLTFRPLRNL 207
            +    K+ G    I R T+   R +
Sbjct: 179 WLEEYYKQYGDFPPIVRRTWETARKI 204