RPSBLAST alignment for GI: 254781076 and conserved domain: TIGR00729
>gnl|CDD|129812 TIGR00729, TIGR00729, ribonuclease H, mammalian HI/archaeal HII subfamily. Archaeal members of this subfamily of RNase H are designated RNase HII and one has been shown to be active as a monomer. A member from Homo sapiens was characterized as RNase HI, large subunit. Length = 206
Score = 82.9 bits (205), Expect = 5e-17
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS--- 78
VAGIDE GRG + GP+VV ++ G+ DSKK++ +REEL+ KI +
Sbjct: 1 VAGIDEAGRGPVIGPLVVGVFAIEEKREEELRKLGVKDSKKLTPGRREELFSKIRNKLGR 60
Query: 79 -AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID------GRSIPEDLPC 131
++ I+ N+++ ++ A L P +D R E
Sbjct: 61 YEVLKITPEEIDRERNINLNENEIEKFSKAAIILIEKPSEVYVDSVDVNPKRFKREIKIK 120
Query: 132 QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
+ I K D+ ++AASIIAKV RDR + +KY D+G GYP+
Sbjct: 121 ERIEGIKVIAEHKADAKYPVVSAASIIAKVERDREIESLKRKYGDFG----SGYPS 172