RPSBLAST alignment for GI: 254781076 and conserved domain: TIGR00729

>gnl|CDD|129812 TIGR00729, TIGR00729, ribonuclease H, mammalian HI/archaeal HII subfamily. Archaeal members of this subfamily of RNase H are designated RNase HII and one has been shown to be active as a monomer. A member from Homo sapiens was characterized as RNase HI, large subunit. Length = 206
 Score = 82.9 bits (205), Expect = 5e-17
 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 24/176 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS--- 78
           VAGIDE GRG + GP+VV    ++          G+ DSKK++  +REEL+ KI +    
Sbjct: 1   VAGIDEAGRGPVIGPLVVGVFAIEEKREEELRKLGVKDSKKLTPGRREELFSKIRNKLGR 60

Query: 79  -AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID------GRSIPEDLPC 131
             ++ I+          N+++  ++    A   L   P    +D       R   E    
Sbjct: 61  YEVLKITPEEIDRERNINLNENEIEKFSKAAIILIEKPSEVYVDSVDVNPKRFKREIKIK 120

Query: 132 QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           +    I      K D+    ++AASIIAKV RDR +    +KY D+G     GYP+
Sbjct: 121 ERIEGIKVIAEHKADAKYPVVSAASIIAKVERDREIESLKRKYGDFG----SGYPS 172