RPSBLAST alignment for GI: 254781076 and conserved domain: COG1039

>gnl|CDD|31241 COG1039, RnhC, Ribonuclease HIII [DNA replication, recombination, and repair]. Length = 297

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 24/154 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA- 79
            + G DEVG+G   GP+VV A+ +   N+P     G+ DSKK+S KK ++L   I     
Sbjct: 84  NLIGSDEVGKGDYFGPLVVCAVYVSKENLPKLKELGVKDSKKLSDKKIQQLAPIIKPLIP 143

Query: 80  --IISISSASHQYIDKH----NIHKATL--DAIYHAVENLQVIPRSALIDGRSIPED--- 128
             ++++    +  + K     N  K  L   AI + +      P   +ID  +  E+   
Sbjct: 144 HSVLTLDPKKYNELYKKFNNANSMKTFLHNQAIQNLLPQKGAQPEFIVIDQFASSENYKN 203

Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAK 154
                          + K +S SL++A ASIIA+
Sbjct: 204 YLQKETNKFSEPVLFLTKAESKSLAVAVASIIAR 237