RPSBLAST alignment of GI: 254781076 and protein with PDBid: 2d0b
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A Length = 310
Score = 154 bits (390), Expect = 1e-38
Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 30/215 (13%)
Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77
G DEVG G GP+VVAA +D +I G+ DSK+++ + + + I
Sbjct: 89 GSLSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIME 148
Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENL----------QVIPRSALIDGRSIPE 127
+ +++ + ++ + + N P + +ID +
Sbjct: 149 TVPHAVTVLDNPQYNRWQRSGMPQTKMKALLHNRTLVKLVDAIAPAEPEAIIIDEFLKRD 208
Query: 128 -----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
+ + + K +S+ +S+AAASIIA+ M +
Sbjct: 209 SYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASIIARYVFLEEMEQLSRAV-GLLLPKG 267
Query: 177 VGYPT-AKHQQVIKEKGPS---CIHRLTFRPLRNL 207
G ++I+ +G +L F +
Sbjct: 268 AGAIVDEAAARIIRARGEEMLETCAKLHFANTKKA 302