RPSBLAST alignment of GI: 254781076 and protein with PDBid: 2d0b

>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A Length = 310
 Score =  154 bits (390), Expect = 1e-38
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 30/215 (13%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77
                 G DEVG G   GP+VVAA  +D  +I      G+ DSK+++ +  + +   I  
Sbjct: 89  GSLSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIME 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENL----------QVIPRSALIDGRSIPE 127
           +   +++   +   ++          +   + N              P + +ID     +
Sbjct: 149 TVPHAVTVLDNPQYNRWQRSGMPQTKMKALLHNRTLVKLVDAIAPAEPEAIIIDEFLKRD 208

Query: 128 -----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
                       +  +   + K +S+ +S+AAASIIA+      M    +          
Sbjct: 209 SYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASIIARYVFLEEMEQLSRAV-GLLLPKG 267

Query: 177 VGYPT-AKHQQVIKEKGPS---CIHRLTFRPLRNL 207
            G        ++I+ +G        +L F   +  
Sbjct: 268 AGAIVDEAAARIIRARGEEMLETCAKLHFANTKKA 302