RPSBLAST alignment of GI: 254781076 and SCOP domain: d1ekea_

Alignment

 Score =  121 bits (304), Expect = 4e-29
 Identities = 48/220 (21%), Positives = 80/220 (36%), Gaps = 42/220 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+VV A  ++          G+ DSK+++  KR  L + + +   +
Sbjct: 3   IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYV 62

Query: 82  SISSASHQY-------------------------IDKHNIHKATLDAIYHAVENLQVIPR 116
                  +                          I+K NI    ++    A         
Sbjct: 63  EKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFE 122

Query: 117 SALIDGRSIPEDLPCQAF---AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
            +  D                A  K D+    ++AASIIAK  RD ++    K Y D G 
Sbjct: 123 DSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIGS 182

Query: 174 DSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
               GYP+  K  + +++     K    I R  ++  + +
Sbjct: 183 ----GYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRI 218

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: Class II ribonuclease H (RNase HII)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]