RPSBLAST alignment of GI: 254781076 and SCOP domain: d1uaxa_

Alignment

 Score =  133 bits (335), Expect = 1e-32
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 20/202 (9%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-- 79
           VAG+DE GRG + GP+V+   ++D  NI      G+ DSK+++  +RE+L+ K+      
Sbjct: 3   VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDD 62

Query: 80  -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED---------- 128
             + + +        H++++   +    A+ +L++ P+   +D   +             
Sbjct: 63  YYVLLVTPKEIDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGL 122

Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-QQ 186
                  A  K D+    ++AASIIAKVTRDR +    +KY ++G        T +  ++
Sbjct: 123 KYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFGSGYPSDPRTKEWLEE 182

Query: 187 VIKEKGPSC-IHRLTFRPLRNL 207
             K+ G    I R T+   R +
Sbjct: 183 YYKQYGDFPPIVRRTWETARKI 204

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: Class II ribonuclease H (RNase HII)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]