Query gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 111
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:18:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781077.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ecfa1 d.17.4.21 (A:2-129) Un 37.7 7.1 0.00052 17.9 1.8 34 28-61 72-105 (128)
2 d1quba5 g.18.1.1 (A:244-326) b 29.3 11 0.0008 16.8 1.6 18 14-31 55-72 (76)
3 d1s29a_ a.4.5.46 (A:) Lupus La 17.8 9.5 0.00069 17.2 -0.6 39 55-108 21-59 (92)
4 d1qbaa1 b.1.18.2 (A:781-885) B 14.4 35 0.0026 13.9 1.6 15 7-21 27-41 (105)
5 d1zh5a1 a.4.5.46 (A:5-103) Lup 11.0 26 0.0019 14.6 0.1 38 55-108 20-57 (99)
6 d1g94a2 c.1.8.1 (A:1-354) Bact 10.5 46 0.0034 13.2 1.2 13 92-104 338-350 (354)
7 d2cqka1 a.4.5.46 (A:43-130) La 8.2 20 0.0014 15.3 -1.4 37 55-108 18-54 (88)
8 d2gmha2 d.16.1.8 (A:237-335) E 6.5 77 0.0056 11.9 2.5 51 26-78 33-85 (99)
9 d1jaea2 c.1.8.1 (A:1-378) Anim 5.6 88 0.0064 11.6 1.2 13 92-104 363-375 (378)
10 d1q8ha_ g.32.1.1 (A:) Osteocal 3.8 1.1E+02 0.0079 11.1 0.2 5 24-28 1-5 (37)
No 1
>d3ecfa1 d.17.4.21 (A:2-129) Uncharacterized protein Ava4193 {Anabaena variabilis [TaxId: 1172]}
Probab=37.72 E-value=7.1 Score=17.88 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=24.9
Q ss_pred CCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 5430000210000043554003312204561005
Q gi|254781077|r 28 EDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNL 61 (111)
Q Consensus 28 edsslfyhfhstlnlmtlhlplrlqeegisqsnl 61 (111)
..|++|---...-.+.|+|--.|+.|||||----
T Consensus 72 rAS~v~q~rTTKG~ly~l~nfF~lDEeGis~iWP 105 (128)
T d3ecfa1 72 RASGVWQMRTTKGTLYTLHNFFRLDEEGIVYVWP 105 (128)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEETTEEEEEEC
T ss_pred CCCCEEEEEECCCEEEEEEHHHEECCCCCEEEEE
T ss_conf 7643178874374189770011325267078874
No 2
>d1quba5 g.18.1.1 (A:244-326) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.28 E-value=11 Score=16.80 Aligned_cols=18 Identities=17% Similarity=0.519 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 766667744788765430
Q gi|254781077|r 14 GINYNIPACYPDPLEDSS 31 (111)
Q Consensus 14 ginynipacypdpledss 31 (111)
.=+..||+||-+|-.-|+
T Consensus 55 DG~l~iP~CfkE~t~~~~ 72 (76)
T d1quba5 55 DGTIEVPKCFKEHTDASD 72 (76)
T ss_dssp TTBCCCCTTCCCCCCGGG
T ss_pred CCEECCCHHHCCCCCHHH
T ss_conf 470518333127787322
No 3
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]}
Probab=17.76 E-value=9.5 Score=17.17 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEC
Q ss_conf 456100541001335400778998741000004555666768654322321000
Q gi|254781077|r 55 GISQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRI 108 (111)
Q Consensus 55 gisqsnlrtdhnvkqhvaitpilqmldltncrhsrvnqwrqisniigykkikri 108 (111)
-.|.+||+.|.-..+++.- .-+.|-.|+-|.+++++|.+
T Consensus 21 YFSd~NL~~D~fL~~~m~~---------------~~~G~V~i~~i~~F~rmk~l 59 (92)
T d1s29a_ 21 YFSDVNVQRDIFLKGKMAE---------------NAEGFVSLETLLTFKRVNSV 59 (92)
T ss_dssp HTSHHHHTTCHHHHHHHTT---------------STTCCEEHHHHTTSHHHHTT
T ss_pred HCCHHHHCCCHHHHHHHHC---------------CCCCCEEHHHHHCCCCHHHH
T ss_conf 7267440428999999816---------------68986972998668478775
No 4
>d1qbaa1 b.1.18.2 (A:781-885) Bacterial chitobiase (N-acetyl-beta-glucoseaminidase), C-terminal domain {Serratia marcescens [TaxId: 615]}
Probab=14.36 E-value=35 Score=13.86 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=11.6
Q ss_pred HHHHHHCCCCCCCCC
Q ss_conf 888873276666774
Q gi|254781077|r 7 LSVISSMGINYNIPA 21 (111)
Q Consensus 7 lsvissmginynipa 21 (111)
|.-+..+||+|.+|.
T Consensus 27 lprLd~~Gi~yrlP~ 41 (105)
T d1qbaa1 27 LAKLDKGGVAYRLPV 41 (105)
T ss_dssp HHHHHHTTCCCCCCC
T ss_pred HHHHHHCCCCCCCCC
T ss_conf 889983897400799
No 5
>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.00 E-value=26 Score=14.60 Aligned_cols=38 Identities=18% Similarity=0.447 Sum_probs=25.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEC
Q ss_conf 456100541001335400778998741000004555666768654322321000
Q gi|254781077|r 55 GISQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRI 108 (111)
Q Consensus 55 gisqsnlrtdhnvkqhvaitpilqmldltncrhsrvnqwrqisniigykkikri 108 (111)
-.|.+||++|.-.++++. .+ ..|-.|+.|.+++++|.+
T Consensus 20 YFSd~NL~~D~fL~~~m~--------------~~--eG~Vpl~~i~~F~r~k~l 57 (99)
T d1zh5a1 20 YFGDFNLPRDKFLKEQIK--------------LD--EGWVPLEIMIKFNRLNRL 57 (99)
T ss_dssp HTSTTTGGGCHHHHHHHT--------------TT--TTCEEHHHHTTSHHHHHH
T ss_pred HCCHHHHCCCHHHHHHHH--------------CC--CCCCCHHHHHCCHHHHHH
T ss_conf 467866352999999972--------------67--996638998646689987
No 6
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}
Probab=10.53 E-value=46 Score=13.18 Aligned_cols=13 Identities=15% Similarity=0.682 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6676865432232
Q gi|254781077|r 92 QWRQISNIIGYKK 104 (111)
Q Consensus 92 qwrqisniigykk 104 (111)
+||||.|.|++.+
T Consensus 338 r~~~i~~mi~fr~ 350 (354)
T d1g94a2 338 RWSYIAGGVDFRN 350 (354)
T ss_dssp GSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 5799999987655
No 7
>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.24 E-value=20 Score=15.33 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=26.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEC
Q ss_conf 456100541001335400778998741000004555666768654322321000
Q gi|254781077|r 55 GISQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRI 108 (111)
Q Consensus 55 gisqsnlrtdhnvkqhvaitpilqmldltncrhsrvnqwrqisniigykkikri 108 (111)
-.|.+||+.|.-.+++. + -+.|-.|+.|.+++++|.+
T Consensus 18 YFSd~NL~~D~fL~~~m---------~--------~~G~V~l~~i~~F~r~k~l 54 (88)
T d2cqka1 18 CFSRENLSKDLYLISQM---------D--------SDQFIPIWTVANMEEIKKL 54 (88)
T ss_dssp HTSHHHHHHCHHHHHHS---------C--------TTSCEEHHHHHHCHHHHHH
T ss_pred HCCHHHHCCCHHHHHHH---------C--------CCCCEEHHHHHCCHHHHHH
T ss_conf 57896608298899733---------4--------7998974998667479987
No 8
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=6.54 E-value=77 Score=11.91 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=29.8
Q ss_pred CCCCCCEEEEEEEEEEEEEEEEEEEE--ECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 76543000021000004355400331--220456100541001335400778998
Q gi|254781077|r 26 PLEDSSLFYHFHSTLNLMTLHLPLRL--QEEGISQSNLRTDHNVKQHVAITPILQ 78 (111)
Q Consensus 26 pledsslfyhfhstlnlmtlhlplrl--qeegisqsnlrtdhnvkqhvaitpilq 78 (111)
-..-.+.+||+...-++..+-+-..| +...++-.. -=...|+|-+|.|+|.
T Consensus 33 ~~~GGgFlY~~~~n~~~v~lG~v~~Ld~~n~~~~p~~--~lq~fK~HP~I~~ll~ 85 (99)
T d2gmha2 33 HTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFR--EFQRWKHHPSIKPTLE 85 (99)
T ss_dssp TSCEEEEEEECCSSSCEEEEEEEEETTCCCTTCCHHH--HHHHHTTSTTTHHHHT
T ss_pred CCCCEEEEEECCCCCEEEEEEEEECHHHHCCCCCHHH--HHHHHHCCHHHHHHHC
T ss_conf 8621048998489955899999960367378989999--9999865988999866
No 9
>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=5.57 E-value=88 Score=11.58 Aligned_cols=13 Identities=31% Similarity=1.165 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6676865432232
Q gi|254781077|r 92 QWRQISNIIGYKK 104 (111)
Q Consensus 92 qwrqisniigykk 104 (111)
+||||.|.+++.+
T Consensus 363 r~~~i~~m~~frn 375 (378)
T d1jaea2 363 RWRQVYGMVGFRN 375 (378)
T ss_dssp GSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999866
No 10
>d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.80 E-value=1.1e+02 Score=11.06 Aligned_cols=5 Identities=100% Similarity=1.830 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 88765
Q gi|254781077|r 24 PDPLE 28 (111)
Q Consensus 24 pdple 28 (111)
|||||
T Consensus 1 pdple 5 (37)
T d1q8ha_ 1 PDPLE 5 (37)
T ss_dssp CCTTH
T ss_pred CCCCC
T ss_conf 98541
Done!