RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781077|ref|YP_003065490.1| hypothetical protein
CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62]
         (111 letters)



>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric.
           This model describes tyrosine 3-monooxygenase, a member
           of the family of tetrameric, biopterin-dependent
           aromatic amino acid hydroxylases found in metazoans. It
           is closely related to tetrameric
           phenylalanine-4-hydroxylase and tryptophan
           5-monooxygenase, and more distantly related to the
           monomeric phenylalanine-4-hydroxylase found in some
           Gram-negative bacteria.
          Length = 457

 Score = 28.0 bits (62), Expect = 0.54
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 25  DPLEDSSLFYHFHSTL-NLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQMLDLT 83
           +   D S      +   N+  L   LR     IS  NL  + NVK+      I    +L 
Sbjct: 79  NADVDYSCLITLEANEINMSLLIESLR-GNSFISGINLLNNQNVKEDWFPKHI---SELD 134

Query: 84  NCRH 87
            C+H
Sbjct: 135 KCQH 138


>gnl|CDD|178982 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.
          Length = 250

 Score = 23.9 bits (53), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 4/24 (16%)

Query: 63  TD-HNVKQ-HVAITPILQMLDLTN 84
           TD H V + +V+ITP+   LDLT 
Sbjct: 217 TDFHAVAEGYVSITPL--QLDLTA 238


>gnl|CDD|150679 pfam10033, ATG13, Autophagy-related protein 13.  Members of this
           family of phosphoproteins are involved in cytoplasm to
           vacuole transport (Cvt), and more specifically in Cvt
           vesicle formation. They are probably involved in the
           switching machinery regulating the conversion between
           the Cvt pathway and autophagy. Finally, ATG13 is also
           required for glycogen storage.
          Length = 226

 Score = 23.9 bits (52), Expect = 9.5
 Identities = 5/28 (17%), Positives = 12/28 (42%)

Query: 49  LRLQEEGISQSNLRTDHNVKQHVAITPI 76
           L     G+S+  + ++ N  +     P+
Sbjct: 180 LSKGRIGLSKPIIDSEENHTETYKFGPV 207


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,734,761
Number of extensions: 89677
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 9
Length of query: 111
Length of database: 5,994,473
Length adjustment: 77
Effective length of query: 34
Effective length of database: 4,330,657
Effective search space: 147242338
Effective search space used: 147242338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.4 bits)