HHsearch alignment for GI: 254781078 and conserved domain: PRK10808
>PRK10808 outer membrane protein A; Reviewed.
Probab=99.90 E-value=1.1e-21 Score=137.21 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 20567888898743652023433202543457532110330376653000057444644103322214555666667667
Q gi|254781078|r 6 YGALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYETHPLADTINRKTYNSLL 85 (242)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~WtG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~ 85 (242)
T Consensus 2 KKt~ial~va~a~~a~~A~Aa~----~d---------------------n~wY~G~k~G~s~~~-d~~~~-~~~~~~d~~ 54 (347)
T PRK10808 2 KKTAIAIAVALAGFATVAQAAP----KD---------------------NTWYTGAKLGWSQYH-DTGFI-NNNGPTHKN 54 (347)
T ss_pred CHHHHHHHHHHHHHHHHHHCCC----CC---------------------CCEEEEEEEEEEEEC-CCCCC-CCCCCCCCC
T ss_conf 4679999999997776431200----02---------------------887896421100121-33124-667776556
Q ss_pred CCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCC-CCCCCE-EEEEEEEEEEEEEC-CEEEEEEEEEEEEEEECCCCC
Q ss_conf 550479988655445779999988674047776432-310100-36798999863314-403444401145753011000
Q gi|254781078|r 86 PNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYR-LKEKYF-IYGDVVLKAGYSVD-SLLIYGMGGFGGAYVIDSSLE 162 (242)
Q Consensus 86 ~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~-~~~k~~-~~Gsvr~r~Gya~~-~~l~Y~~gG~A~~~~~~~~~~ 162 (242)
T Consensus 55 ~~g~G~f~GY--qfn~~-~a~E~GYd~lG~~~~~g~~~~~~~~~~g~~La~k~~ypl~d~l~ly~k~G~~y~~~d~~~~~ 131 (347)
T PRK10808 55 QLGAGAFGGY--QVNPY-LGFEMGYDWLGRMPYKGDVSNGAFKAQGVQLTAKLGYPITDDLDVYTRLGGMVWRADTKSNV 131 (347)
T ss_pred CCEEEEEEEE--EECCE-EEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEEEEECCCCCC
T ss_conf 6124567547--72544-88987000028543245444764014678888888104567723257853489971234455
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEC-CCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 2366665555434556530379873166732787688889888744-873000366666644220123413899988620
Q gi|254781078|r 163 KVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPH-HIHSVNNSNAKSDVERVDRKGNAHIASLGINMH 241 (242)
Q Consensus 163 ~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~-g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~ 241 (242)
T Consensus 132 ------~~~~~~~~~d~g~s~~~g~GveY~lt~~~~~R~eYq~~~~igd-----------~~~~g~~~d~~~~slGlsY~ 194 (347)
T PRK10808 132 ------TGGARGKDHDTGVSPVFAGGVEYAITPEWATRLEYQWTNNIGD-----------ANTIGTRPDNGLLSVGVSYR 194 (347)
T ss_pred ------CCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCC-----------CCCCCCCCCCCEEEEEEEEC
T ss_conf ------6654323565673620672035880637268888999810575-----------55557467775699999963
Q ss_pred C
Q ss_conf 9
Q gi|254781078|r 242 F 242 (242)
Q Consensus 242 F 242 (242)
T Consensus 195 F 195 (347)
T PRK10808 195 F 195 (347)
T ss_pred C
T ss_conf 7