HHsearch alignment for GI: 254781078 and conserved domain: pfam01617

>pfam01617 Surface_Ag_2 Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.
Probab=92.75  E-value=0.6  Score=23.78  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             CEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCC--------------------------CCCCCEEEEEEEEEEEEEE
Q ss_conf             50479988655445779999988674047776432--------------------------3101003679899986331
Q gi|254781078|r   87 NGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYR--------------------------LKEKYFIYGDVVLKAGYSV  140 (242)
Q Consensus        87 ~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~--------------------------~~~k~~~~Gsvr~r~Gya~  140 (242)
T Consensus       101 ~gfsGaiGYs--~~~~RiE~E~sye~Fdvk~~~~~~~~da~~y~al~r~~~~~~~~~~y~v~kN~gis~~S~m~N~CYD~  178 (279)
T pfam01617       101 TGFGGAIGYS--MDGPRVELEVSYERFDVKNQGNNYKNDAHKYAALTRDAAIAAADSKYVVLKNDGLTDISLMLNACYDI  178 (279)
T ss_pred             CEEEEEEEEC--CCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEEEEEC
T ss_conf             2068999681--49988999987658335899876146615899986002666667746999967788665799999962


Q ss_pred             --C--CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEE-CCCCEEE
Q ss_conf             --4--403444401145753011000236666555543455653037987316673278768888988874-4873000
Q gi|254781078|r  141 --D--SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIP-HHIHSVN  214 (242)
Q Consensus       141 --~--~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d-~g~~~~~  214 (242)
T Consensus       179 ~~~~~~i~PY~C~GiG~d~i~---------------~~~~~~~K~aYq~KlGvsY~ls~~i~lF~~gyYHkV~gn~-F~  241 (279)
T pfam01617       179 AHEGIPVSPYVCAGVGADLIS---------------VFGAINPKFSYQGKAGLSYPITPEISLFAGGHYHKVIGNE-FD  241 (279)
T ss_pred             CCCCCCCCCEEEEECCHHHHH---------------HCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCC-CC
T ss_conf             238862044787743774632---------------3267533589999523788738885999988998731775-57