HHsearch alignment for GI: 254781078 and conserved domain: pfam03797

>pfam03797 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Probab=98.26  E-value=0.00016  Score=43.29  Aligned_cols=151  Identities=13%  Similarity=0.068  Sum_probs=88.0

Q ss_pred             EEEEEEEEEEEEEEEEEECCCCC--CCCCCCCC--CCCEEEEEEEEEEEE-CCEEEEEEEEEEEECCC--C------CCC
Q ss_conf             00057444644103322214555--66666766--755047998865544-57799999886740477--7------643
Q gi|254781078|r   54 WSGNYVGLHISRLYETHPLADTI--NRKTYNSL--LPNGLGIELGHNIQL-EDFVFGINCHTTAAKDD--S------TFY  120 (242)
Q Consensus        54 WtG~YiG~~~G~~~~~~~~~d~~--~~~~~n~~--~~~g~G~~~GYN~Q~-~~~V~GvE~d~~~~~~~--~------~~~  120 (242)
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~~~f~E~g~~~~  163 (265)
T pfam03797        84 DGGLYLDGVLAYGRFDNDVKRLGTSTGTAKGDYDSHGLGASLEAGYRFKLSGNLTLTPFAGLQYVYLRQDGFTESGARSF  163 (265)
T ss_pred             CCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEECCCCC
T ss_conf             89836976788899715048730678730222802499999998762332697599699999999987687667099843


Q ss_pred             CCCCCCEEEEEEEEEEEEEE----C--CEEEEEEEEEEEEEEECCCCCCCC-----CCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             23101003679899986331----4--403444401145753011000236-----666555543455653037987316
Q gi|254781078|r  121 RLKEKYFIYGDVVLKAGYSV----D--SLLIYGMGGFGGAYVIDSSLEKVE-----SDNSKNAKGRFDGHGSSVVLGIGL  189 (242)
Q Consensus       121 ~~~~k~~~~Gsvr~r~Gya~----~--~~l~Y~~gG~A~~~~~~~~~~~~~-----~~~~~~~~~~~d~t~~G~tvGaGV  189 (242)
T Consensus       164 ~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  242 (265)
T pfam03797       164 ALSVDSQSLTNLSGPLGLRLEYRFSLRSLKPYATLGWAYEFD-DYRQVPTNGATLLASGGSWVTSGTPLARNAAELGAGV  242 (265)
T ss_pred             CEEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEECC-CCCCCEEEEEEEECCCCCEEECCCCCCCEEEEEEEEE
T ss_conf             517844666589999999999985287364899999999977-8875503999972689842996756665499999889


Q ss_pred             EEECCCCEEEEEEEEE
Q ss_conf             6732787688889888
Q gi|254781078|r  190 DYMVNYDISLSASYRY  205 (242)
Q Consensus       190 EYait~nwslraEY~Y  205 (242)
T Consensus       243 ~~~~~~~~~l~~~~~~  258 (265)
T pfam03797       243 ELALGKNLSLFLNYSG  258 (265)
T ss_pred             EEEECCCEEEEEEEEE
T ss_conf             9998998699999970