HHsearch alignment for GI: 254781078 and conserved domain: pfam03797
>pfam03797 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Probab=98.26 E-value=0.00016 Score=43.29 Aligned_cols=151 Identities=13% Similarity=0.068 Sum_probs=88.0
Q ss_pred EEEEEEEEEEEEEEEEEECCCCC--CCCCCCCC--CCCEEEEEEEEEEEE-CCEEEEEEEEEEEECCC--C------CCC
Q ss_conf 00057444644103322214555--66666766--755047998865544-57799999886740477--7------643
Q gi|254781078|r 54 WSGNYVGLHISRLYETHPLADTI--NRKTYNSL--LPNGLGIELGHNIQL-EDFVFGINCHTTAAKDD--S------TFY 120 (242)
Q Consensus 54 WtG~YiG~~~G~~~~~~~~~d~~--~~~~~n~~--~~~g~G~~~GYN~Q~-~~~V~GvE~d~~~~~~~--~------~~~ 120 (242)
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~~~f~E~g~~~~ 163 (265)
T pfam03797 84 DGGLYLDGVLAYGRFDNDVKRLGTSTGTAKGDYDSHGLGASLEAGYRFKLSGNLTLTPFAGLQYVYLRQDGFTESGARSF 163 (265)
T ss_pred CCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEECCCCC
T ss_conf 89836976788899715048730678730222802499999998762332697599699999999987687667099843
Q ss_pred CCCCCCEEEEEEEEEEEEEE----C--CEEEEEEEEEEEEEEECCCCCCCC-----CCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 23101003679899986331----4--403444401145753011000236-----666555543455653037987316
Q gi|254781078|r 121 RLKEKYFIYGDVVLKAGYSV----D--SLLIYGMGGFGGAYVIDSSLEKVE-----SDNSKNAKGRFDGHGSSVVLGIGL 189 (242)
Q Consensus 121 ~~~~k~~~~Gsvr~r~Gya~----~--~~l~Y~~gG~A~~~~~~~~~~~~~-----~~~~~~~~~~~d~t~~G~tvGaGV 189 (242)
T Consensus 164 ~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 242 (265)
T pfam03797 164 ALSVDSQSLTNLSGPLGLRLEYRFSLRSLKPYATLGWAYEFD-DYRQVPTNGATLLASGGSWVTSGTPLARNAAELGAGV 242 (265)
T ss_pred CEEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEECC-CCCCCEEEEEEEECCCCCEEECCCCCCCEEEEEEEEE
T ss_conf 517844666589999999999985287364899999999977-8875503999972689842996756665499999889
Q ss_pred EEECCCCEEEEEEEEE
Q ss_conf 6732787688889888
Q gi|254781078|r 190 DYMVNYDISLSASYRY 205 (242)
Q Consensus 190 EYait~nwslraEY~Y 205 (242)
T Consensus 243 ~~~~~~~~~l~~~~~~ 258 (265)
T pfam03797 243 ELALGKNLSLFLNYSG 258 (265)
T ss_pred EEEECCCEEEEEEEEE
T ss_conf 9998998699999970