HHsearch alignment for GI: 254781078 and conserved domain: pfam05736

>pfam05736 OprF OprF membrane domain. This domain represents the presumed membrane spanning region of the OprF proteins. This region is involved in channel formation and is thought to form an 8-stranded beta-barrel.
Probab=95.53  E-value=0.027  Score=31.13  Aligned_cols=99  Identities=8%  Similarity=-0.028  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEEE--------EECCCC--CC
Q ss_conf             56788889874365202343320254345753211033037665300005744464410332--------221455--56
Q gi|254781078|r    8 ALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYET--------HPLADT--IN   77 (242)
Q Consensus         8 ~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~WtG~YiG~~~G~~~~~--------~~~~d~--~~   77 (242)
T Consensus         9 ~aig~lvaa~s~~alAqgqgave~e~f~g~~~fDs~r~~~-------~g~~~G~~iGY~lTddvsl~l~y~~~~~~r~~~   81 (184)
T pfam05736         9 FAIGSLVAATSFGALAQGQGAVEIEAFYKKQYNDSVRNMK-------NGDLPGGSIGYFLTDDVELNLSYDETHDTRSTD   81 (184)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCC-------CCCCCEEEEEEECCCCEEEEEEECCCCCHHCCC
T ss_conf             7888888873016776546747984226647526313532-------489640365257178838998873421000135


Q ss_pred             CCCCCCCCCCEEEEEEEEEE-EE----CCEEEEEEEEEEEE
Q ss_conf             66667667550479988655-44----57799999886740
Q gi|254781078|r   78 RKTYNSLLPNGLGIELGHNI-QL----EDFVFGINCHTTAA  113 (242)
Q Consensus        78 ~~~~n~~~~~g~G~~~GYN~-Q~----~~~V~GvE~d~~~~  113 (242)
T Consensus        82 ~~g~~~i~g~~~rLDalYHF~~pg~~lrPYvs~G~gh~s~~  122 (184)
T pfam05736        82 GTGNQKVGGDLTSLDAQYHFGTPGDGLRPYVSAGFAHQSIT  122 (184)
T ss_pred             CCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEE
T ss_conf             76661035634667779973898766337277314652000