HHsearch alignment for GI: 254781078 and conserved domain: pfam05736
>pfam05736 OprF OprF membrane domain. This domain represents the presumed membrane spanning region of the OprF proteins. This region is involved in channel formation and is thought to form an 8-stranded beta-barrel.
Probab=95.53 E-value=0.027 Score=31.13 Aligned_cols=99 Identities=8% Similarity=-0.028 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEEE--------EECCCC--CC
Q ss_conf 56788889874365202343320254345753211033037665300005744464410332--------221455--56
Q gi|254781078|r 8 ALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYET--------HPLADT--IN 77 (242)
Q Consensus 8 ~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~WtG~YiG~~~G~~~~~--------~~~~d~--~~ 77 (242)
T Consensus 9 ~aig~lvaa~s~~alAqgqgave~e~f~g~~~fDs~r~~~-------~g~~~G~~iGY~lTddvsl~l~y~~~~~~r~~~ 81 (184)
T pfam05736 9 FAIGSLVAATSFGALAQGQGAVEIEAFYKKQYNDSVRNMK-------NGDLPGGSIGYFLTDDVELNLSYDETHDTRSTD 81 (184)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCC-------CCCCCEEEEEEECCCCEEEEEEECCCCCHHCCC
T ss_conf 7888888873016776546747984226647526313532-------489640365257178838998873421000135
Q ss_pred CCCCCCCCCCEEEEEEEEEE-EE----CCEEEEEEEEEEEE
Q ss_conf 66667667550479988655-44----57799999886740
Q gi|254781078|r 78 RKTYNSLLPNGLGIELGHNI-QL----EDFVFGINCHTTAA 113 (242)
Q Consensus 78 ~~~~n~~~~~g~G~~~GYN~-Q~----~~~V~GvE~d~~~~ 113 (242)
T Consensus 82 ~~g~~~i~g~~~rLDalYHF~~pg~~lrPYvs~G~gh~s~~ 122 (184)
T pfam05736 82 GTGNQKVGGDLTSLDAQYHFGTPGDGLRPYVSAGFAHQSIT 122 (184)
T ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEE
T ss_conf 76661035634667779973898766337277314652000