HHsearch alignment for GI: 254781078 and conserved domain: pfam06316

>pfam06316 Ail_Lom Enterobacterial Ail/Lom protein. This family consists of several bacterial and phage Ail/Lom-like proteins. The Yersinia enterocolitica Ail protein is a known virulence factor. Proteins in this family are predicted to consist of eight transmembrane beta-sheets and four cell surface-exposed loops. It is thought that Ail directly promotes invasion and loop 2 contains an active site, perhaps a receptor-binding domain. The phage protein Lom is expressed during lysogeny, and encode host-cell envelope proteins. Lom is found in the bacterial outer membrane, and is homologous to virulence proteins of two other enterobacterial genera. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=99.01  E-value=4.7e-08  Score=62.68  Aligned_cols=133  Identities=13%  Similarity=0.176  Sum_probs=88.2

Q ss_pred             EEEEEEEEEECCEEEEEEEEEEEECCCCCCCCC---------CCCCEEEEEEEEEEEEEECC-EEEEEEEEEEEEEEECC
Q ss_conf             799886554457799999886740477764323---------10100367989998633144-03444401145753011
Q gi|254781078|r   90 GIELGHNIQLEDFVFGINCHTTAAKDDSTFYRL---------KEKYFIYGDVVLKAGYSVDS-LLIYGMGGFGGAYVIDS  159 (242)
Q Consensus        90 G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~---------~~k~~~~Gsvr~r~Gya~~~-~l~Y~~gG~A~~~~~~~  159 (242)
T Consensus        50 G~NlKYRYE~d~~-lGvIgSfTy~~~~~~~~~~~~~~~~~~~~~~~~-YySlmaGPsyR~Nd~vS~Ygl~G~a~~k~~~~  127 (199)
T pfam06316        50 GINVKYRYEFTDT-LGLITSFSYANAEDEQKTHYNDTRWHEDSVRNR-WFSVMAGPSVRVNEWFSAYALAGVAYARVSSF  127 (199)
T ss_pred             CEEEEEEEECCCC-EEEEEEEEEECCCCCCCEECCCCCCCCCCCCCE-EEEEEECCCEEECCEEEEEEECCEEEEEEEEC
T ss_conf             5388866441798-078999999615653120205762025642203-89997346268511012012123136776402


Q ss_pred             CCCCCC--C-----CCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEE
Q ss_conf             000236--6-----665555434556530379873166732787688889888744873000366666644220123413
Q gi|254781078|r  160 SLEKVE--S-----DNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAH  232 (242)
Q Consensus       160 ~~~~~~--~-----~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h  232 (242)
T Consensus       128 ~~d~~~~~~~~~~~~~~~~~s~~~s~s~tsfAyGAGvQfNP~~nvaiD~gYEgS~~------------------~d~~~~  189 (199)
T pfam06316       128 AGDYFRLTDDEGKKHDHLTGSDDARRSHTALAWGAGVQFNPTENIAVDLAYEASGR------------------GDWRTD  189 (199)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCC------------------CCCEEC
T ss_conf             46503312555654555444444544433224420279715766799987763034------------------870517


Q ss_pred             EEEEEEEEEC
Q ss_conf             8999886209
Q gi|254781078|r  233 IASLGINMHF  242 (242)
Q Consensus       233 ~v~~GinY~F  242 (242)
T Consensus       190 gf~vGVGYRF  199 (199)
T pfam06316       190 AFIVGTGYKF  199 (199)
T ss_pred             CEEEEEEECC
T ss_conf             5899514409