HHSEARCH alignment of GI: 254781078 and SCOP domain: d2pora_

Alignment

Probab=95.74  E-value=0.041  Score=27.65  Aligned_cols=40  Identities=20%  Similarity=0.340  Sum_probs=32.8

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .++.|++|+|+++.++-+||.+.+.                   +.+..++.+||+|+|
T Consensus       262 ~~~lG~~Y~Lsk~t~ly~~y~~~~~-------------------d~~~~~~~~G~~~~F  301 (301)
T d2pora_         262 YYGLGASYDLGGGASIVGGIADNDL-------------------PNSDMVADLGVKFKF  301 (301)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEECS-------------------SSCCCEEEEEEEEEC
T ss_pred             EEEEEEEEECCCCEEEEEEEEEEEC-------------------CCCCEEEEEEEEEEC
T ss_conf             9999999978999799999999835-------------------898737999649989

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Porin
domain: Porin
species: Rhodobacter capsulatus [TaxId: 1061]