Query gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 242 No_of_seqs 152 out of 223 Neff 5.0 Searched_HMMs 13730 Date Wed Jun 1 11:32:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781078.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1qj8a_ f.4.1.1 (A:) Outer mem 99.9 9.2E-26 6.7E-30 157.1 17.6 127 88-242 21-148 (148) 2 d1p4ta_ f.4.1.1 (A:) Outer mem 99.9 9.5E-23 6.9E-27 140.6 19.6 151 55-242 4-155 (155) 3 d1qjpa_ f.4.1.1 (A:) Outer mem 99.9 9.9E-21 7.2E-25 129.6 18.3 163 55-242 5-170 (171) 4 d1uynx_ f.4.5.1 (X:) Transloca 99.2 3.6E-09 2.6E-13 66.3 17.7 169 56-242 111-299 (299) 5 d1t16a_ f.4.3.4 (A:) Long-chai 98.3 5E-05 3.6E-09 43.6 18.7 22 86-107 204-226 (427) 6 d1i78a_ f.4.4.1 (A:) Outer mem 98.0 0.00024 1.8E-08 39.9 14.3 63 180-242 228-297 (297) 7 d1t16a_ f.4.3.4 (A:) Long-chai 97.9 0.00043 3.1E-08 38.5 17.7 136 91-242 275-421 (427) 8 d2fgqx1 f.4.3.1 (X:3-332) Pori 97.5 0.0016 1.2E-07 35.3 16.1 61 182-242 269-330 (330) 9 d1uynx_ f.4.5.1 (X:) Transloca 97.4 0.0029 2.1E-07 34.0 15.5 151 87-242 96-268 (299) 10 d1osma_ f.4.3.1 (A:) Porin {Kl 97.2 0.0048 3.5E-07 32.8 16.1 50 184-242 293-342 (342) 11 d1phoa_ f.4.3.1 (A:) Porin {Es 97.0 0.007 5.1E-07 31.9 20.9 47 184-242 284-330 (330) 12 d3prna_ f.4.3.1 (A:) Porin {Rh 96.8 0.011 7.8E-07 30.9 14.9 38 184-242 252-289 (289) 13 d1qjpa_ f.4.1.1 (A:) Outer mem 95.9 0.03 2.2E-06 28.4 8.5 16 182-197 76-91 (171) 14 d2pora_ f.4.3.1 (A:) Porin {Rh 95.7 0.041 3E-06 27.6 19.4 40 184-242 262-301 (301) 15 d2zfga1 f.4.3.1 (A:1-340) Pori 95.1 0.071 5.2E-06 26.4 20.8 47 184-242 294-340 (340) 16 d2vdfa1 f.4.4.2 (A:7-253) Oute 30.0 13 0.00093 14.0 21.0 176 59-242 44-247 (247) 17 d1fepa_ f.4.3.3 (A:) Ferric en 27.8 14 0.001 13.8 8.5 19 90-108 499-517 (714) 18 d2gufa1 f.4.3.3 (A:4-594) Oute 25.7 15 0.0011 13.6 15.3 20 184-203 543-562 (591) No 1 >d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]} Probab=99.94 E-value=9.2e-26 Score=157.10 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=102.1 Q ss_pred EEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCC Q ss_conf 04799886554457799999886740477764323101003679899986331-44034444011457530110002366 Q gi|254781078|r 88 GLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVES 166 (242) Q Consensus 88 g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~ 166 (242) ..|+.+|||||++++++|+|+++.+...+..............++.++..|.+ ++++||+++|+++.+.+.+.. T Consensus 21 ~~G~~lgy~y~~~n~~~gvE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~G~a~~~~~~~~~----- 95 (148) T d1qj8a_ 21 MGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEY----- 95 (148) T ss_dssp EEEEEEEEEEECTTCSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEET----- T ss_pred CCEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEECCC----- T ss_conf 114999982891791799999999885678304663110158899988889747745498986778999984137----- Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 6655554345565303798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 167 DNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 167 ~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ...+.+.+.+||++|+|+||++++||++|+||||.+++ +.+.+.+++||+||| T Consensus 96 -----~~~~~~~~~~g~~~G~Gvey~l~~n~~~~~eY~~~~~~------------------~~d~~~~~~Gv~YrF 148 (148) T d1qj8a_ 96 -----PTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIR------------------SVDVGTWIAGVGYRF 148 (148) T ss_dssp -----TTEEEEEEEEEEEEEEEEEECSSTTEEEEEEEEEEEET------------------TEEEEEEEEEEEEEC T ss_pred -----CCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECC------------------CCEEEEEEEEEEEEC T ss_conf -----87655645444469621799806887999999997479------------------943306999989889 No 2 >d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]} Probab=99.91 E-value=9.5e-23 Score=140.61 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=102.0 Q ss_pred EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE Q ss_conf 00574446441033222145556666676675504799886554457799999886740477764323101003679899 Q gi|254781078|r 55 SGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVL 134 (242) Q Consensus 55 tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~ 134 (242) ||||||+++|+.+...+..+. .+...++++||+ +++|.+++|........+. .... + .+...+.+ T Consensus 4 sGfYvg~~~g~~~~~~~~~~~---------~g~~~~~~~GY~--f~~~~~e~~y~~~~~~~~~-~~~~--~-~~~~~l~~ 68 (155) T d1p4ta_ 4 SGFYVQADAAHAKASSSLGSA---------KGFSPRISAGYR--INDLRFAVDYTRYKNYKAP-STDF--K-LYSIGASA 68 (155) T ss_dssp EEEEEEEEEEEEEEECSSCEE---------EEECCEEEEEEE--ETTEEEEEEEEEEEESSCC-SSCC--E-EEEEEEEE T ss_pred CCEEEEEEEEEEECCCCCCCC---------CCEEEEEEEEEE--CCCEEEEEEEEECCCCCCC-CCCC--C-EEEEEEEE T ss_conf 760898882788031676678---------865079999998--1899999999971453445-7520--0-02503899 Q ss_pred EEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEE Q ss_conf 986331-4403444401145753011000236666555543455653037987316673278768888988874487300 Q gi|254781078|r 135 KAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSV 213 (242) Q Consensus 135 r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~ 213 (242) +.-+.. +++.||+++|+++.+++..... ....+.+..+|.+|+|+||++++||++++||||.++++... T Consensus 69 ~~~~~~~~~~~py~~~G~g~~~~~~~~~~----------~~~~~~~~~~~~~g~G~~y~lt~n~~~~~eyry~~~~~~~~ 138 (155) T d1p4ta_ 69 IYDFDTQSPVKPYLGARLSLNRASVDLGG----------SDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVNT 138 (155) T ss_dssp EEECCCSSSEEEEEEEEEEEEEEEEEETT----------EEEECCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETT T ss_pred EEEECCCCCEEEEEEEEEEEEEEEECCCC----------CCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEECCCCCC T ss_conf 99843888452899986678984521355----------21026763625899899999359989999999997568766 Q ss_pred ECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 03666666442201234138999886209 Q gi|254781078|r 214 NNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 214 ~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ..+.+.|.+++||+||| T Consensus 139 ------------~~~~~~~~~~~Gl~Y~F 155 (155) T d1p4ta_ 139 ------------VKNVRSGELSAGVRVKF 155 (155) T ss_dssp ------------EEEEEEEEEEEEEEEEC T ss_pred ------------CCCCCEEEEEEEEEEEC T ss_conf ------------75311049999999989 No 3 >d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]} Probab=99.87 E-value=9.9e-21 Score=129.56 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=107.8 Q ss_pred EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCC-CCCCCCEE-EEEE Q ss_conf 005744464410332221455566666766755047998865544577999998867404777643-23101003-6798 Q gi|254781078|r 55 SGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFY-RLKEKYFI-YGDV 132 (242) Q Consensus 55 tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~-~~~~k~~~-~Gsv 132 (242) .++|||+++|++......... .....+....++|+++||++ .++ +++|+.+.+........ ......+. ..++ T Consensus 5 ~~wYvG~~~G~~~~~~~~~~~--~~~~~~~~~~~~g~~~GY~f--n~~-~~vE~~y~~~g~~~~~~~~~~~~~~~~~~~l 79 (171) T d1qjpa_ 5 NTWYTGAKLGWSQYHDTGLIN--NNGPTHENKLGAGAFGGYQV--NPY-VGFEMGYDWLGRMPYKGSVENGAYKAQGVQL 79 (171) T ss_dssp TEEEEEEEEEEEC---------------CCCEEEEEEEEEEEE--ETT-EEEEEEEEEEEECCC-------CEEEEEEEE T ss_pred CCEEEEEEEEEEEEECCCCCC--CCCCCCCCCCEEEEEEEEEC--CCC-EEEEEEEEECCCCCCCCCCCCCEEEEEEEEE T ss_conf 979999998259962444337--88633578706889998870--775-8999999745874212666554068888899 Q ss_pred EEEEEEEEC-CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCC Q ss_conf 999863314-4034444011457530110002366665555434556530379873166732787688889888744873 Q gi|254781078|r 133 VLKAGYSVD-SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIH 211 (242) Q Consensus 133 r~r~Gya~~-~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~ 211 (242) .+|..|.+. .+.||+++|+++.+.+.+. ......+++..++.+|+|+||+|++||++|+||||++.... T Consensus 80 ~~~~~~~~~~~~~~y~~~G~~~~~~~~~~----------~~~~~~~~~~~~~~~G~G~~y~i~~~~~l~~ey~~~~~~~~ 149 (171) T d1qjpa_ 80 TAKLGYPITDDLDIYTRLGGMVWRADTYS----------NVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGD 149 (171) T ss_dssp EEEEEEESSSSEEEEEEEEEEEEEEEEEC----------SSSCEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEC---- T ss_pred EEEEEEECCCCEEEEEEEEEEEEEEEEEC----------CCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCC T ss_conf 99999853886069898616999988411----------44562046851567982799992799799999999962586 Q ss_pred EEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 0003666666442201234138999886209 Q gi|254781078|r 212 SVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ....+.+.+.|.+++||+||| T Consensus 150 ----------~~~~~~~~~~~~~~~G~~Y~F 170 (171) T d1qjpa_ 150 ----------AHTIGTRPDNGMLSLGVSYRF 170 (171) T ss_dssp --------------------CEEEEEEEEEC T ss_pred ----------CCCCCCCCCCCEEEEEEEEEC T ss_conf ----------555454322448999999988 No 4 >d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]} Probab=99.17 E-value=3.6e-09 Score=66.30 Aligned_cols=169 Identities=14% Similarity=0.134 Sum_probs=100.3 Q ss_pred EEEEEEEEEEEEEEEECCCCC--CCCCCCCC--CCCEEEEEEEEEEEEC-CEEEEEEEEEEEECC--CC-----CCCCCC Q ss_conf 057444644103322214555--66666766--7550479988655445-779999988674047--77-----643231 Q gi|254781078|r 56 GNYVGLHISRLYETHPLADTI--NRKTYNSL--LPNGLGIELGHNIQLE-DFVFGINCHTTAAKD--DS-----TFYRLK 123 (242) Q Consensus 56 G~YiG~~~G~~~~~~~~~d~~--~~~~~n~~--~~~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~--~~-----~~~~~~ 123 (242) ++|+-+.+++++.+.+..... ........ ....+.+.+||+|++. .|.+-..+.+.+... +. ....++ T Consensus 111 ~~y~~~~l~~~~~~~~~~R~~~~~~~~~g~~~~~~~~~~~e~Gy~~~~~~~~~l~P~~~l~y~~~~~d~y~E~g~~~~l~ 190 (299) T d1uynx_ 111 IGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWS 190 (299) T ss_dssp TEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCE T ss_pred CEEEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCEEEECCCCCEE T ss_conf 73578887268973225773056641035673118999999867785189669999877677788547707766753111 Q ss_pred CCCEEEEEEEEEEEEEE----C-CEEEEEEEEEEEEEEECCCCCC--CCCC-CCCCCCCCCCCCCEEEEEEEEEEEECCC Q ss_conf 01003679899986331----4-4034444011457530110002--3666-6555543455653037987316673278 Q gi|254781078|r 124 EKYFIYGDVVLKAGYSV----D-SLLIYGMGGFGGAYVIDSSLEK--VESD-NSKNAKGRFDGHGSSVVLGIGLDYMVNY 195 (242) Q Consensus 124 ~k~~~~Gsvr~r~Gya~----~-~~l~Y~~gG~A~~~~~~~~~~~--~~~~-~~~~~~~~~d~t~~G~tvGaGVEYait~ 195 (242) .+...+-++++++|..+ + .+-|++..++............ .... .........+..+..+.+|+|+++.+++ T Consensus 191 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~ 270 (299) T d1uynx_ 191 GNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGN 270 (299) T ss_dssp ECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEET T ss_pred ECCCCEEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEECC T ss_conf 02653268889744799863377237889999999706998205899861687503672357888429999859999889 Q ss_pred CEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 76888898887448730003666666442201234138999886209 Q gi|254781078|r 196 DISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 196 nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) +|++.++|.|.- .-+.+.|.+++||.|+| T Consensus 271 ~~~l~~~y~~~~------------------~~~~~~~~~~~gl~y~F 299 (299) T d1uynx_ 271 GWNGLARYSYAG------------------SKQYGNHSGRVGVGYRF 299 (299) T ss_dssp TEEEEEEEEEEE------------------ETTEEEEEEEEEEEEEC T ss_pred CEEEEEEEEEEE------------------CCCCCEEEEEEEEEEEC T ss_conf 999999999996------------------67851179999999989 No 5 >d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]} Probab=98.35 E-value=5e-05 Score=43.64 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=13.4 Q ss_pred CCEEEEEEEEEEEEC-CEEEEEE Q ss_conf 550479988655445-7799999 Q gi|254781078|r 86 PNGLGIELGHNIQLE-DFVFGIN 107 (242) Q Consensus 86 ~~g~G~~~GYN~Q~~-~~V~GvE 107 (242) ..+++.++|-.||.. ++-+|+- T Consensus 204 ~~g~~~~lG~~~~~~~~~~ig~s 226 (427) T d1t16a_ 204 QWGFGWNAGILYELDKNNRYALT 226 (427) T ss_dssp EEEEEEEEEEEEEEETTEEEEEE T ss_pred CEEEEEEEEEEEECCCCEEEEEE T ss_conf 41564787889963723488899 No 6 >d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli [TaxId: 562]} Probab=98.00 E-value=0.00024 Score=39.85 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=43.5 Q ss_pred CEEEEEEEEEEEECCCCEEEEEEEEEEEC-----CCCEEECCCCCCCCC--CCCCCCCEEEEEEEEEEEC Q ss_conf 30379873166732787688889888744-----873000366666644--2201234138999886209 Q gi|254781078|r 180 GSSVVLGIGLDYMVNYDISLSASYRYIPH-----HIHSVNNSNAKSDVE--RVDRKGNAHIASLGINMHF 242 (242) Q Consensus 180 ~~G~tvGaGVEYait~nwslraEY~Y~d~-----g~~~~~~~~~~~~~~--~~~~~~~~h~v~~GinY~F 242 (242) ..+|-+.+.++|.++||+++.+|++|-.+ +++.++..++..... .+....+.-++.+||-|+| T Consensus 228 ~~~~~v~~~a~Y~vt~~~s~~ve~~y~~~~~~~G~t~~~~~~tg~ss~~~d~ag~~~~~~tis~Gl~y~F 297 (297) T d1i78a_ 228 QNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF 297 (297) T ss_dssp EEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEEEEC T ss_pred CCEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCEEEECCCCEEEECCCCCCCEECCEEEEEEEEEEC T ss_conf 6579999988799789879999999999980148638996588726731575571201429998445659 No 7 >d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]} Probab=97.90 E-value=0.00043 Score=38.50 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=73.2 Q ss_pred EEEEEEEEEC-CEEEEEEEEEEE-ECCCC-------CCCCCCCCCEEEEEEEEEEEEEE--CCEEEEEEEEEEEEEEECC Q ss_conf 9988655445-779999988674-04777-------64323101003679899986331--4403444401145753011 Q gi|254781078|r 91 IELGHNIQLE-DFVFGINCHTTA-AKDDS-------TFYRLKEKYFIYGDVVLKAGYSV--DSLLIYGMGGFGGAYVIDS 159 (242) Q Consensus 91 ~~~GYN~Q~~-~~V~GvE~d~~~-~~~~~-------~~~~~~~k~~~~Gsvr~r~Gya~--~~~l~Y~~gG~A~~~~~~~ 159 (242) +.+|.-+++. +|.+.++.+... ...+. ..........|....+.|+|-.+ .+.|.+ .+|++|...-. T Consensus 275 ~~~G~~~~~~~~~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ey~~~~~l~l-R~Gy~y~~~~~- 352 (427) T d1t16a_ 275 WEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTF-RTGIAFDDSPV- 352 (427) T ss_dssp EEEEEEEEEETTEEEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEEECCSSSEEE-EEEEEEECCSS- T ss_pred EEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEE-EEEEEECCCCC- T ss_conf 9999999725651688721321110001333345777533322335331489998789983566999-99999746777- Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEE Q ss_conf 00023666655554345565303798731667327876888898887448730003666666442201234138999886 Q gi|254781078|r 160 SLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGIN 239 (242) Q Consensus 160 ~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~Gin 239 (242) ..+.. . -......-+.+.+|+.|.+++++++.+-|.|.+..+.+++...- ....+.+.|++.++++ T Consensus 353 -----~~~~~-~---~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 418 (427) T d1t16a_ 353 -----PAQNR-S---ISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPY-----QFESEGKAWLFGTNFN 418 (427) T ss_dssp -----CTTTC-C---SSSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEECCEEEEETTE-----EEEEEEEEEEEEEEEE T ss_pred -----CCCCC-C---CCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCC-----EEEEEEEEEEEEEEEE T ss_conf -----76554-6---43467898899988989848986999999999747531026730-----0478878999999999 Q ss_pred EEC Q ss_conf 209 Q gi|254781078|r 240 MHF 242 (242) Q Consensus 240 Y~F 242 (242) |+| T Consensus 419 y~F 421 (427) T d1t16a_ 419 YAF 421 (427) T ss_dssp EEC T ss_pred EEE T ss_conf 995 No 8 >d2fgqx1 f.4.3.1 (X:3-332) Porin {Comamonas acidovorans [TaxId: 80866]} Probab=97.54 E-value=0.0016 Score=35.32 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=43.4 Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEE-ECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 37987316673278768888988874487300-03666666442201234138999886209 Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSV-NNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~-~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) .-.+..|++|.|+++.++-+||-|++....+. ..........++....+...+.+||.++| T Consensus 269 ~~~~~lg~~Y~lSKrT~lYa~~~y~~n~~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~rh~F 330 (330) T d2fgqx1 269 AHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF 330 (330) T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEEECTTCCCCCCBTTTBCSCCCTTCEEEEEEEEEEEEC T ss_pred CEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEC T ss_conf 24999999997567618744206511258774210111001578789987599999989989 No 9 >d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]} Probab=97.35 E-value=0.0029 Score=33.97 Aligned_cols=151 Identities=12% Similarity=0.052 Sum_probs=64.6 Q ss_pred CEEEEEEEEEEEECC-E-EEEEEEEEEEECCCCC-----CCCCCCCC-EEEEEEEEEEEEEEC---C--EEEEEEEEEEE Q ss_conf 504799886554457-7-9999988674047776-----43231010-036798999863314---4--03444401145 Q gi|254781078|r 87 NGLGIELGHNIQLED-F-VFGINCHTTAAKDDST-----FYRLKEKY-FIYGDVVLKAGYSVD---S--LLIYGMGGFGG 153 (242) Q Consensus 87 ~g~G~~~GYN~Q~~~-~-V~GvE~d~~~~~~~~~-----~~~~~~k~-~~~Gsvr~r~Gya~~---~--~l~Y~~gG~A~ 153 (242) +..++.++..|++++ | |-+ ...+.+.+.+.. ....+.+. ...-.+.+++||.+. . +-|| .++.| T Consensus 96 d~~~~~~y~~~~~~~~~y~~~-~l~~~~~~~~~~R~~~~~~~~~g~~~~~~~~~~~e~Gy~~~~~~~~~l~P~--~~l~y 172 (299) T d1uynx_ 96 DSISLFAGIRHDAGDIGYLKG-LFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVE--GGLRY 172 (299) T ss_dssp EEEEEEEEEEEEETTTEEEEE-EEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEE--EEEEE T ss_pred EEEEEEEEEEEECCCCEEEEE-EEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEE--EEEEE T ss_conf 747999999998488735788-872689732257730566410356731189999998677851896699998--77677 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCE--EEEEEEEEEECCCCEEECC----C---CCCCCCC Q ss_conf 75301100023666655554345565303798731667327876--8888988874487300036----6---6666442 Q gi|254781078|r 154 AYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDI--SLSASYRYIPHHIHSVNNS----N---AKSDVER 224 (242) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nw--slraEY~Y~d~g~~~~~~~----~---~~~~~~~ 224 (242) .+++.+....... ...-...+.+....-..+|.-+++.+..++ .+++.|++ ++........ . ....... T Consensus 173 ~~~~~d~y~E~g~-~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (299) T d1uynx_ 173 DLLKQDAFAEKGS-ALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVER-DLNGRDYTVTGGFTGATAATGKTGA 250 (299) T ss_dssp EEEEECCEEEESC-TTCCEECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEE-ESSCCCCCCCC-------------- T ss_pred EEEECCCEEEECC-CCCEEECCCCEEEEEEEEEEEEEEECCCCEEEEEEEEEEE-ECCCCCCCEEEEEECCCCCEEEEEC T ss_conf 7885477077667-5311102653268889744799863377237889999999-7069982058998616875036723 Q ss_pred CCCCCCEEEEEEEEEEEC Q ss_conf 201234138999886209 Q gi|254781078|r 225 VDRKGNAHIASLGINMHF 242 (242) Q Consensus 225 ~~~~~~~h~v~~GinY~F 242 (242) .+.+.+.-.+.+|+++.+ T Consensus 251 ~~~~~~~~~~g~G~~~~~ 268 (299) T d1uynx_ 251 RNMPHTRLVAGLGADVEF 268 (299) T ss_dssp ---CCEEEEEEEEEEEEE T ss_pred CCCCCCEEEEEEEEEEEE T ss_conf 578884299998599998 No 10 >d1osma_ f.4.3.1 (A:) Porin {Klebsiella pneumoniae [TaxId: 573]} Probab=97.16 E-value=0.0048 Score=32.79 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=34.9 Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 98731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) .+-+|+||.|+.+..+-+||+|.+........... ..+..++.+||.|+| T Consensus 293 ~~~~G~~Y~lsKrt~~Y~~y~~~~~~~~~~~~~~~---------~~~~~~~~~G~r~~F 342 (342) T d1osma_ 293 YVDVGATYYFNKNMSTYVDYKINLLDDNSFTRSAG---------ISTDDVVALGLVYQF 342 (342) T ss_dssp EEEEEEEEEEETTEEEEEEEEEECCCCCHHHHHHT---------CCCSCEEEEEEEEEC T ss_pred EEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCCC---------CCCCCEEEEEEEEEC T ss_conf 99999999965898999999998156743234467---------666778999999989 No 11 >d1phoa_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences [TaxId: 562]} Probab=96.99 E-value=0.007 Score=31.86 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=33.4 Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 98731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) .+-.|++|.|+++..+-+||+|.+...... . ...+...+.+||.|+| T Consensus 284 ~~~vG~~Y~lsk~~~~yaey~~~~~d~~~~-----~-------~~~~~~~~~vGlr~~F 330 (330) T d1phoa_ 284 YIDVGATYYFNKNMSAFVDYKINQLDSDNK-----L-------NINNDDIVAVGMTYQF 330 (330) T ss_dssp EEEEEEEEESSSSEEEEEEEEEECCCSSCT-----T-------CCCCCCEEEEEEEEEC T ss_pred EEEEEEEEEECCCEEEEEEEEEECCCCCCC-----C-------CCCCCCEEEEEEEEEC T ss_conf 999999999079989999999971457665-----7-------7666889999999989 No 12 >d3prna_ f.4.3.1 (A:) Porin {Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]} Probab=96.78 E-value=0.011 Score=30.88 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=29.0 Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 98731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ..+.|++|.|+++.++.++|.+.+.. .-...+||+|.| T Consensus 252 ~~~lg~~Y~ls~~~~l~a~~~~~~~~---------------------~~~a~~Gv~~~F 289 (289) T d3prna_ 252 AYGIGADYQFAEGVKVSGSVQSGFAN---------------------ETVADVGVRFDF 289 (289) T ss_dssp EEEEEEEEEEETTEEEEEEEEECTTC---------------------CEEEEEEEEEEC T ss_pred EEEEEEEEECCCCEEEEEEEEEEECC---------------------CCEEEEEEEEEC T ss_conf 89999999849984999999998089---------------------825725657769 No 13 >d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]} Probab=95.86 E-value=0.03 Score=28.39 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=5.5 Q ss_pred EEEEEEEEEEECCCCE Q ss_conf 3798731667327876 Q gi|254781078|r 182 SVVLGIGLDYMVNYDI 197 (242) Q Consensus 182 G~tvGaGVEYait~nw 197 (242) ++.+.+-+-|.+++.| T Consensus 76 ~~~l~~~~~~~~~~~~ 91 (171) T d1qjpa_ 76 GVQLTAKLGYPITDDL 91 (171) T ss_dssp EEEEEEEEEEESSSSE T ss_pred EEEEEEEEEEECCCCE T ss_conf 8899999998538860 No 14 >d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]} Probab=95.74 E-value=0.041 Score=27.65 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=32.8 Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 98731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) .++.|++|+|+++.++-+||.+.+. +.+..++.+||+|+| T Consensus 262 ~~~lG~~Y~Lsk~t~ly~~y~~~~~-------------------d~~~~~~~~G~~~~F 301 (301) T d2pora_ 262 YYGLGASYDLGGGASIVGGIADNDL-------------------PNSDMVADLGVKFKF 301 (301) T ss_dssp EEEEEEEEEEETTEEEEEEEEEECS-------------------SSCCCEEEEEEEEEC T ss_pred EEEEEEEEECCCCEEEEEEEEEEEC-------------------CCCCEEEEEEEEEEC T ss_conf 9999999978999799999999835-------------------898737999649989 No 15 >d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different sequences [TaxId: 562]} Probab=95.07 E-value=0.071 Score=26.36 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=34.4 Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 98731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) .+.+|+||.|+++..+-+||++.+....... ...+...+.+||.|.| T Consensus 294 ~~~vG~~Y~lsk~~~~y~~Y~~~~~d~~~~~------------~~~~~~~~~~G~ry~F 340 (340) T d2zfga1 294 YFEVGATYYFNKNMSTYVDYIINQIDSDNKL------------GVGSDDTVAVGIVYQF 340 (340) T ss_dssp EEEEEEEEEEETTEEEEEEEEEECCCTTCTT------------CCCCBCEEEEEEEEEC T ss_pred EEEEEEEEEECCCEEEEEEEEEECCCCCCCC------------CCCCCCEEEEEEEEEC T ss_conf 9999999994699899999999822577667------------7767879999999989 No 16 >d2vdfa1 f.4.4.2 (A:7-253) Outer membrane adhesin/invasin OpcA {Neisseria meningitidis [TaxId: 487]} Probab=29.98 E-value=13 Score=14.03 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=83.0 Q ss_pred EEEEEEEEEEEEECCCCCC-----CCCCC-----CCCCCEEEEEEEEEEEE---CCEEE--EEEEEEEEECCCCCC---C Q ss_conf 4446441033222145556-----66667-----66755047998865544---57799--999886740477764---3 Q gi|254781078|r 59 VGLHISRLYETHPLADTIN-----RKTYN-----SLLPNGLGIELGHNIQL---EDFVF--GINCHTTAAKDDSTF---Y 120 (242) Q Consensus 59 iG~~~G~~~~~~~~~d~~~-----~~~~n-----~~~~~g~G~~~GYN~Q~---~~~V~--GvE~d~~~~~~~~~~---~ 120 (242) +.+.++++-++.+..+... .+..| ......+-+++||-+.. ++..| |+-.-+.....+-.. . T Consensus 44 ~r~e~~y~r~k~d~~~~~~~~~~~~k~~~~~~~~g~~~~~~dvyagY~yT~p~~~~~~lr~g~GLGYr~lkD~~~~~~~~ 123 (247) T d2vdfa1 44 IRLEAGFGRSKKNIINLETDENKLGKTKNVKLPTGVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHT 123 (247) T ss_dssp EEEEEEEEEEEEEEEECCCHHHHTSSCCCCCCCCSEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEC------ T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEECCCCCCCHHHHHHHHCCCCC T ss_conf 26774204565422133235555455654001257754303567546752775668754113454511210233148887 Q ss_pred CCCCCCEEEE----EEEEEEEE--EECCEEEEEEEEEEEEE-EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC Q ss_conf 2310100367----98999863--31440344440114575-30110002366665555434556530379873166732 Q gi|254781078|r 121 RLKEKYFIYG----DVVLKAGY--SVDSLLIYGMGGFGGAY-VIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMV 193 (242) Q Consensus 121 ~~~~k~~~~G----svr~r~Gy--a~~~~l~Y~~gG~A~~~-~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYai 193 (242) --+.++-|+- .++.++|= -+++++-|- +.+.. ++...+ ..+. ..........+|+-+|+=|--.+ T Consensus 124 ydr~sqy~Y~pi~~~~~~~LgagW~I~pw~E~~---~~L~~k~k~~~S--~~~~---s~d~n~k~kG~G~glg~~i~KqL 195 (247) T d2vdfa1 124 LHSSRQSWLAKVHADLLSQLGNGWYINPWSEVK---FDLNSRYKLNTG--VTNL---KKDINQKTNGWGFGLGANIGKKL 195 (247) T ss_dssp CEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEE---EEEEEEEEECC------------CEEEECCEEEEEEEEEEEEEC T ss_pred CCCEEEEEEEEEEEHHEECCCCCCEECCCEEEE---EEECCHHCCCCC--CCCC---CHHHHHHCCCEEEEEEEEHHHHC T ss_conf 364000455520001001047873674504368---870410103301--2464---20123321671178633633310 Q ss_pred CCCEEEEEE--EEEEECCCC-EEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 787688889--888744873-0003666666442201234138999886209 Q gi|254781078|r 194 NYDISLSAS--YRYIPHHIH-SVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 194 t~nwslraE--Y~Y~d~g~~-~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ++.+.+-.| |||-++... ++-......+...++.+...|-.=+.|.++| T Consensus 196 ~d~~~l~fgPfyRyW~Ik~S~~~~~~~~~g~~~~~EPkNkt~EyGlrvsv~F 247 (247) T d2vdfa1 196 GESASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKTSIREYGLRVGIKF 247 (247) T ss_dssp C--CEEEEEEEEEEEEECCCCCBCC-------CBCCCCEEEEEEEEEEEEEC T ss_pred CCCCCEEECCEEEEEEECCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEEC T ss_conf 5543055423046543236756478505873468647875422326788629 No 17 >d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA {Escherichia coli [TaxId: 562]} Probab=27.77 E-value=14 Score=13.81 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=10.6 Q ss_pred EEEEEEEEEECCEEEEEEE Q ss_conf 7998865544577999998 Q gi|254781078|r 90 GIELGHNIQLEDFVFGINC 108 (242) Q Consensus 90 G~~~GYN~Q~~~~V~GvE~ 108 (242) ...+|+.|+.+.+.+.+.. T Consensus 499 ~~e~G~~~~~~~~~~~~~~ 517 (714) T d1fepa_ 499 NKEIGLEFKRDGWLAGVTW 517 (714) T ss_dssp EEEEEEEEEETTEEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCH T ss_conf 1132111221122322321 No 18 >d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter BtuB {Escherichia coli [TaxId: 562]} Probab=25.68 E-value=15 Score=13.59 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=12.7 Q ss_pred EEEEEEEEECCCCEEEEEEE Q ss_conf 98731667327876888898 Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASY 203 (242) Q Consensus 184 tvGaGVEYait~nwslraEY 203 (242) ++-+++.|.++++|++++.- T Consensus 543 ~~dl~~~y~~~~~~~l~~~v 562 (591) T d2gufa1 543 LWDLAVAYPVTSHLTVRGKI 562 (591) T ss_dssp EEEEEEEEESSSSEEEEEEE T ss_pred EEEEEEEEEECCCEEEEEEE T ss_conf 99999999938987999999 Done!