RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781078|ref|YP_003065491.1| hypothetical protein
CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62]
         (242 letters)



>gnl|CDD|161768 TIGR00214, lipB, lipoate-protein ligase B.  Involved in lipoate
           biosynthesis as the main determinant of the
           lipoyl-protein ligase activity required for lipoylation
           of enzymes such as alpha-ketoacid dehydrogenases.
           Involved in activation and re-activation (following
           denaturation) of lipoyl-protein ligases (calcium
           ion-dependant process).
          Length = 184

 Score = 28.6 bits (64), Expect = 1.3
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 49  DEYGIWSGNY----VGLHISRLYETHPLADTINR--KTYNSLLPNGL-GIELGHNIQLED 101
           D  G+W        +G+ + R    H LA  IN     ++ + P G  G E+G    L  
Sbjct: 105 DATGVWVEGKKVASLGIRVRRGCTFHGLALNINMDLSPFSHINPCGYAGREMG---SLNQ 161

Query: 102 FVFGINCHTTAAK 114
           F+ G      A  
Sbjct: 162 FLPGATVENVAPL 174


>gnl|CDD|173170 PRK14707, PRK14707, hypothetical protein; Provisional.
          Length = 2710

 Score = 28.2 bits (62), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 54  WSGNYVGLHISRLYETHPLADTINRKTYNSL 84
           W G  V   ++RL     + D + RKT+NSL
Sbjct: 637 WPGTEVCAEVARLLAGRLVGDRLLRKTFNSL 667


>gnl|CDD|182279 PRK10163, PRK10163, DNA-binding transcriptional repressor AllR;
           Provisional.
          Length = 271

 Score = 27.7 bits (61), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 92  ELGHNIQLEDFVFGINCHTTAAKDD 116
           ELG+ +  E+ V G+NC  +A  DD
Sbjct: 201 ELGYTVDKEEHVVGLNCIASAIYDD 225


>gnl|CDD|165553 PHA03296, PHA03296, envelope glycoprotein H; Provisional.
          Length = 814

 Score = 27.3 bits (60), Expect = 4.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 15/60 (25%)

Query: 143 LLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRF--------------DGHGSSV-VLGI 187
           +L YG+GGF  A+ IDS+ E+ E     N+   F              D HGS++ +L  
Sbjct: 703 ILQYGLGGFEDAFFIDSADEERELLAGANSSIAFFKAMDPEFFNYALLDPHGSALRILAF 762


>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II;
           Reviewed.
          Length = 414

 Score = 26.1 bits (57), Expect = 7.9
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 129 YGDV-VLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGI 187
           YGD   + AG +  +    GM GFG A  + +      +D  + A   +D      VLG 
Sbjct: 180 YGDADAMVAGGAEKASTPLGMAGFGAAKALST-----RNDEPQKASRPWDKDRDGFVLGD 234

Query: 188 GLDYMV 193
           G   MV
Sbjct: 235 GAGMMV 240


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0706    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,974,628
Number of extensions: 248619
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 13
Length of query: 242
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,028,145
Effective search space: 608249895
Effective search space used: 608249895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)