HHsearch alignment for GI: 254781079 and conserved domain: COG3887

>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms].

Probab=98.33  E-value=0.00012  Score=55.03  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=97.2

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             89725755442210001146886544431100000001111100000-01334303650168610123444589999986
Q gi|254781079|r  126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIE  204 (266)
Q Consensus       126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~-~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~  204 (266)
T Consensus       172 ~~k~vl~~i~vDNyDe~t~~~~d~~rs~inS~V~s~l~~~a~~~~if~rr~s~drf~~~~~~~~L~~l~~~kF~iLd~~R  251 (655)
T COG3887         172 NSKPVLGIISVDNYDEVTQGLSDSDRSQINSFVTSFLEEWATEYNIFLRRYSSDRFYAFTNYKILEKLEEDKFSILDEFR  251 (655)
T ss_pred             CCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf             04736899984257777537873318999999999999999974465333037708999647999999873648999999


Q ss_pred             HCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCC
Q ss_conf             315406799568999999998779989989999999999999997099689994021005
Q gi|254781079|r  205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN  264 (266)
Q Consensus       205 ~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~~~~~~~  264 (266)
T Consensus       252 E~s----~~~~ipLTLSiGvg~--g~~~~~elg~vA~~~L~lAlgRGGDQVvIke~~~k~  305 (655)
T COG3887         252 EES----SQKNIPLTLSIGVGY--GENNLIELGEVAQSNLDLALGRGGDQVVIKENNGKV  305 (655)
T ss_pred             HHH----HCCCCCEEEEEEECC--CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCE
T ss_conf             874----034764699998536--766577899999875788742688669997379955