HHsearch alignment for GI: 254781079 and conserved domain: PRK10060
>PRK10060 RNase II stability modulator; Provisional.
Probab=100.00 E-value=1.1e-38 Score=314.50 Aligned_cols=171 Identities=28% Similarity=0.405 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH-----CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 9999999999999610401050204899988877-----08972575544221000114688654443110000000111
Q gi|254781079|r 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 (266)
Q Consensus 91 ~~l~~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~-----~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~ 165 (266)
T Consensus 224 Te~k~~ee~l~~lA~~D~LTgLPNR~~~~~rL~~ai~~~~~~~~AvlfiDLD~FK~INDt~GH~~GD~lL~~vA~RL~~~ 303 (663)
T PRK10060 224 TEERRAQERLRILANTDSITGLPNRNAIQELIDHAIAQADNNQVGIVYLDLDNFKKVNDAYGHMFGDQLLQDVSLAILSC 303 (663)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 48999999999873677423866289999999999971769938999997867683446627088999999999999976
Q ss_pred CCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHH
Q ss_conf 110000001334303650168610123444589999986315406799568999999998779-9899899999999999
Q gi|254781079|r 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 (266)
Q Consensus 166 ~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al 244 (266)
T Consensus 304 lr~~d~vARlGGDEFvvLl~~~~~~~~~~~a~ril~~l~~-P-~~i~~~~v~vsaSIGIa~~p~~~~~~~~Ll~~AD~Am 381 (663)
T PRK10060 304 LEEDQTLARLGGDEFLVLASHTSQAALEAMASRILTRLRL-P-FRIGLIEVYTGCSIGIALSPEHGDDSESLIRSADTAM 381 (663)
T ss_pred CCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-C-EEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 8998899854897899997789989999999999998506-8-7999999999889999980799999999999999999
Q ss_pred HHHHHCCCCEEEECCHHHC
Q ss_conf 9999709968999402100
Q gi|254781079|r 245 YVAKKSGRNRVVCFSDIEN 263 (266)
Q Consensus 245 ~~AK~~gkn~~~~~~~~~~ 263 (266)
T Consensus 382 y~AK~~Grn~~~~f~~~m~ 400 (663)
T PRK10060 382 YTAKEGGRGQFCVFSPEMN 400 (663)
T ss_pred HHHHHCCCCCCEEECHHHH
T ss_conf 9999708998166288999