HHsearch alignment for GI: 254781079 and conserved domain: PRK11059

>PRK11059 regulatory protein CsrD; Provisional.
Probab=100.00  E-value=1.8e-31  Score=259.52  Aligned_cols=159  Identities=19%  Similarity=0.221  Sum_probs=140.3

Q ss_pred             HHHHHHCCCHHCCCCHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC--CCH
Q ss_conf             99996104010502048999888770-------897257554422100011468865444311000000011111--000
Q gi|254781079|r  100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG--TPM  170 (266)
Q Consensus       100 l~~~a~~D~LTgL~NR~~f~~~l~~~-------~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~--~~~  170 (266)
T Consensus       224 IR~~Af~D~lTGL~NR~~F~~rL~s~L~~~~~~~~~GaVllIdld~fk~iNd~~G~~~gD~lL~~va~~L~~~l~r~~d~  303 (642)
T PRK11059        224 IRSNAFLDAKTGLGNRLFFDNQLDTLLEDQEKVGAHGVVMLIRLPDFDLLQEELGESQVDELLFELINLLSTFVQRYPGA  303 (642)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             98877507223850589999999999837454187559999987267699881095989999999999999997538987


Q ss_pred             HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             00013343036501686101234445899999863154067995689999999987799899899999999999999970
Q gi|254781079|r  171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS  250 (266)
Q Consensus       171 ~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~  250 (266)
T Consensus       304 ilARl~gdEFaILlP~~s~~ea~~lA~qLlk~l~~l~~~~~~d--~~~~~hIGia~y~~G~~~~~Ll~~AD~Al~~Ak~q  381 (642)
T PRK11059        304 LLARYSRSDFAVLLPHRSLKEADSLASQLLKAVDSLPPPKMLD--RDDFLHIGIAAYRSGQSTEQVMEEAEMALRSAQLQ  381 (642)
T ss_pred             EEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             7887158738999699985999999999999997136887677--77648999996889998999999999999999972


Q ss_pred             CCCEEEECCH
Q ss_conf             9968999402
Q gi|254781079|r  251 GRNRVVCFSD  260 (266)
Q Consensus       251 gkn~~~~~~~  260 (266)
T Consensus       382 g~n~w~~yd~  391 (642)
T PRK11059        382 GGNSWFMYDK  391 (642)
T ss_pred             CCCCCEEEEC
T ss_conf             8998377302