HHsearch alignment for GI: 254781079 and conserved domain: PRK11059
>PRK11059 regulatory protein CsrD; Provisional.
Probab=100.00 E-value=1.8e-31 Score=259.52 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=140.3
Q ss_pred HHHHHHCCCHHCCCCHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC--CCH
Q ss_conf 99996104010502048999888770-------897257554422100011468865444311000000011111--000
Q gi|254781079|r 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG--TPM 170 (266)
Q Consensus 100 l~~~a~~D~LTgL~NR~~f~~~l~~~-------~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~--~~~ 170 (266)
T Consensus 224 IR~~Af~D~lTGL~NR~~F~~rL~s~L~~~~~~~~~GaVllIdld~fk~iNd~~G~~~gD~lL~~va~~L~~~l~r~~d~ 303 (642)
T PRK11059 224 IRSNAFLDAKTGLGNRLFFDNQLDTLLEDQEKVGAHGVVMLIRLPDFDLLQEELGESQVDELLFELINLLSTFVQRYPGA 303 (642)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 98877507223850589999999999837454187559999987267699881095989999999999999997538987
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 00013343036501686101234445899999863154067995689999999987799899899999999999999970
Q gi|254781079|r 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 (266)
Q Consensus 171 ~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~ 250 (266)
T Consensus 304 ilARl~gdEFaILlP~~s~~ea~~lA~qLlk~l~~l~~~~~~d--~~~~~hIGia~y~~G~~~~~Ll~~AD~Al~~Ak~q 381 (642)
T PRK11059 304 LLARYSRSDFAVLLPHRSLKEADSLASQLLKAVDSLPPPKMLD--RDDFLHIGIAAYRSGQSTEQVMEEAEMALRSAQLQ 381 (642)
T ss_pred EEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 7887158738999699985999999999999997136887677--77648999996889998999999999999999972
Q ss_pred CCCEEEECCH
Q ss_conf 9968999402
Q gi|254781079|r 251 GRNRVVCFSD 260 (266)
Q Consensus 251 gkn~~~~~~~ 260 (266)
T Consensus 382 g~n~w~~yd~ 391 (642)
T PRK11059 382 GGNSWFMYDK 391 (642)
T ss_pred CCCCCEEEEC
T ss_conf 8998377302