HHsearch alignment for GI: 254781079 and conserved domain: TIGR00254
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria ,. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase ..
Probab=99.89 E-value=9.3e-23 Score=193.03 Aligned_cols=158 Identities=36% Similarity=0.556 Sum_probs=144.7
Q ss_pred HHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC-CCCHHH
Q ss_conf 999610401050204899988877-------089725755442210001146886544431100000001111-100000
Q gi|254781079|r 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFV 172 (266)
Q Consensus 101 ~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~-~~~~~~ 172 (266)
T Consensus 2 ~~~~~~d~ltg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~fk~~nd~~gh~~gd~~l~~~~~~~~~~~~r~~d~~ 81 (171)
T TIGR00254 2 ERLALRDPLTGLYNRRFLEELLDEELERAKRFGRSLSLLLIDLDNFKKINDTLGHDVGDEVLKEVARLLKSSLHRGSDLV 81 (171)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 64211134110010367999999888752024554134565300332210010301235899999999875310000100
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEEEEEEEECC--CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 013343036501686101234445899999863154067-99568999999998779--989989999999999999997
Q gi|254781079|r 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKK 249 (266)
Q Consensus 173 ~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~t~s~Gia~~~--~~~~~~~ll~~Ad~Al~~AK~ 249 (266)
T Consensus 82 ~r~gg~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ad~~~y~~k~ 161 (171)
T TIGR00254 82 GRYGGEEFAVILPGTPLEDALSKAERLRDALESKPIEVAHGSETLTLTVSIGVACYPGDHGLTLEELLKLADEALYKAKK 161 (171)
T ss_pred EECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 11077515887317751578999999998764310012456512456665300103788731279999887788888875
Q ss_pred CCCCEEEEC
Q ss_conf 099689994
Q gi|254781079|r 250 SGRNRVVCF 258 (266)
Q Consensus 250 ~gkn~~~~~ 258 (266)
T Consensus 162 ~g~~~~~~~ 170 (171)
T TIGR00254 162 AGRNRVFVA 170 (171)
T ss_pred HCCCCCCCC
T ss_conf 035531024