HHsearch alignment for GI: 254781079 and conserved domain: TIGR00254

>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria ,. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase ..
Probab=99.89  E-value=9.3e-23  Score=193.03  Aligned_cols=158  Identities=36%  Similarity=0.556  Sum_probs=144.7

Q ss_pred             HHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC-CCCHHH
Q ss_conf             999610401050204899988877-------089725755442210001146886544431100000001111-100000
Q gi|254781079|r  101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFV  172 (266)
Q Consensus       101 ~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~-~~~~~~  172 (266)
T Consensus         2 ~~~~~~d~ltg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~fk~~nd~~gh~~gd~~l~~~~~~~~~~~~r~~d~~   81 (171)
T TIGR00254         2 ERLALRDPLTGLYNRRFLEELLDEELERAKRFGRSLSLLLIDLDNFKKINDTLGHDVGDEVLKEVARLLKSSLHRGSDLV   81 (171)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             64211134110010367999999888752024554134565300332210010301235899999999875310000100


Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEEEEEEEECC--CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             013343036501686101234445899999863154067-99568999999998779--989989999999999999997
Q gi|254781079|r  173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKK  249 (266)
Q Consensus       173 ~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~t~s~Gia~~~--~~~~~~~ll~~Ad~Al~~AK~  249 (266)
T Consensus        82 ~r~gg~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ad~~~y~~k~  161 (171)
T TIGR00254        82 GRYGGEEFAVILPGTPLEDALSKAERLRDALESKPIEVAHGSETLTLTVSIGVACYPGDHGLTLEELLKLADEALYKAKK  161 (171)
T ss_pred             EECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             11077515887317751578999999998764310012456512456665300103788731279999887788888875


Q ss_pred             CCCCEEEEC
Q ss_conf             099689994
Q gi|254781079|r  250 SGRNRVVCF  258 (266)
Q Consensus       250 ~gkn~~~~~  258 (266)
T Consensus       162 ~g~~~~~~~  170 (171)
T TIGR00254       162 AGRNRVFVA  170 (171)
T ss_pred             HCCCCCCCC
T ss_conf             035531024