HHsearch alignment of GI: 254781079 and MMDB domain: 3bq0_A_1-10_78-169_236-244
>3bq0_A (A:1-10,A:78-169,A:236-244) POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius}
Probab=92.97 E-value=0.037 Score=35.44 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=66.1
Q ss_pred CCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 3110000000111110-000001334303650168---610123444589999986315406799568999999998779
Q gi|254781079|r 153 KVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALG---SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 (266)
Q Consensus 153 ~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~ 228 (266)
++-+.+++.+.+.+.+ ...+-.+|-||+.+=+.+ ....++..++.+|++.+.+. ..+++|+|++..
T Consensus 12 ~lY~~~S~~i~~il~~~~~~ve~~SiDE~~lDlT~~~~~~~~~~~~~a~~ir~~I~~~---------tglt~SvGIg~N- 81 (111)
T 3bq0_A 12 PIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEK---------EKITVTVGVAPN- 81 (111)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHHHHHHHHHHHHHHHHHH---------HCCCEEEEEESS-
T ss_pred HHHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCHHHCCCCHHHHHHHHHHHHHHH---------HCCCEEECCCCC-
T ss_conf 7899999976542103587410245762577403430003565999999999999985---------286334402786-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCC
Q ss_conf 9899899999999999999970996899940210056
Q gi|254781079|r 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 (266)
Q Consensus 229 ~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~~~~~~~~ 265 (266)
- -.|..|...+|-+| -.++..+++++++
T Consensus 82 ------k--lLAKlAs~~~KP~G-~~vi~~~~v~~k~ 109 (111)
T 3bq0_A 82 ------K--ILAKIIADKSKPNG-LGVIRPEPVENKS 109 (111)
T ss_dssp ------H--HHHHHHHHTTCSSC-EEECCGCCCCSEE
T ss_pred ------C--CHHHHHHHHCCCCC-CCCCCCCCCCCCC
T ss_conf ------1--00354775144320-0235736422225