HHsearch alignment of GI: 254781079 and MMDB domain: 3bre_A_176-358
>3bre_A (A:176-358) Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A*
Probab=99.89 E-value=5.9e-23 Score=194.06 Aligned_cols=156 Identities=33% Similarity=0.483 Sum_probs=128.4
Q ss_pred HHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC-HHHCCCCCCEE
Q ss_conf 1050204899988877-------089725755442210001146886544431100000001111100-00001334303
Q gi|254781079|r 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180 (266)
Q Consensus 109 LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~-~~~~R~~gdeF 180 (266)
|||||||.+|.++++. .+++++|+++|||+||.||+.||++.||++|+.+|+++....+.+ ++++|.|+|+|
T Consensus 1 LTGL~NR~~f~~~l~~~l~~~~~~~~~~~l~~idid~f~~in~~~G~~~gD~~l~~~a~~l~~~~~~~~~~~~~~~~d~~ 80 (183)
T 3bre_A 1 LTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEF 80 (183)
T ss_dssp TTCSBCHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEE
T ss_conf 44744289999999999999986199789999988515888760274113424889999999706776637883588637
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCC-C--CCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 65016861012344458999998631540-6--799568999999998779-9899899999999999999970996899
Q gi|254781079|r 181 AAAALGSSEQEAAILANDLRKIIENSQIN-I--SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 (266)
Q Consensus 181 ~ill~~~~~~~~~~~~~~l~~~l~~~~~~-~--~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gkn~~~ 256 (266)
++++|+.+.+......+++...+...... . .....+..++++|++.++ ++.++++++++|+.||+.||++|+|+++
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ll~~A~~Al~~Ak~~g~n~~~ 160 (183)
T 3bre_A 81 AMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQVG 160 (183)
T ss_dssp EEEEETCCHHHHHHHHHHHHHHHHTTCCEESSSSTTEECCEEEEEEEECCCSSSCCTHHHHHHHHHHHHHHHTTTSSSEE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 78615886056899999999999862455346887548999999999777999975999999999999999984899799
Q ss_pred ECCHHHCC
Q ss_conf 94021005
Q gi|254781079|r 257 CFSDIENN 264 (266)
Q Consensus 257 ~~~~~~~~ 264 (266)
+|++--++
T Consensus 161 ~y~~~~~~ 168 (183)
T 3bre_A 161 LMEQPVPP 168 (183)
T ss_dssp EECC----
T ss_pred EECCCCCH
T ss_conf 95898996