HHsearch alignment of GI: 254781079 and MMDB domain: 3hva_A_
>3hva_A (A:) Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=99.92 E-value=8.1e-26 Score=215.88 Aligned_cols=165 Identities=21% Similarity=0.305 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 999999999610401050204899988877-------0897257554422100011468865444311000000011111
Q gi|254781079|r 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 (266)
Q Consensus 95 ~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~ 167 (266)
+..+++++++++||+||||||.+|.+.++. .+.++++++++||+|+.+|+.||++.||++|+.+++.|+..++
T Consensus 4 ~~~~~l~~~~~~D~~TGl~Nr~~~~~~l~~~~~~~~~~~~~~~ii~i~i~~~~~i~~~~G~~~~d~il~~~a~~l~~~~~ 83 (177)
T 3hva_A 4 GSEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFG 83 (177)
T ss_dssp --------CCCBCTTTCSEEHHHHHHHHHHHHHHHHHTCCCEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHCCCCCCCCCCCCHHHCCCCHHHCCCC
T ss_conf 89999999838276778146999999999999986741465204433420111014323322233002102100000123
Q ss_pred CCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHH
Q ss_conf 0000001334303650168610123444589999986315406799568999999998779-989989999999999999
Q gi|254781079|r 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246 (266)
Q Consensus 168 ~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~ 246 (266)
+++.++|+++|+|++++|+.+.+++...+.++...+...++ ..++....+++++|++.++ ++.++++++.+|+.||+.
T Consensus 84 ~~~~~~R~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~ll~~A~~Al~~ 162 (177)
T 3hva_A 84 EEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHLF-ELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADD 162 (177)
T ss_dssp GGCEEEECSSSEEEEEEETCCHHHHHHHHHHHHHHHHTCCE-EETTEEECCCEEEEEEEECTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 32212334442467613543211127899999999984111-13697057775477897689999999999999999999
Q ss_pred HHHCCCCEEEECCH
Q ss_conf 99709968999402
Q gi|254781079|r 247 AKKSGRNRVVCFSD 260 (266)
Q Consensus 247 AK~~gkn~~~~~~~ 260 (266)
||++|+|+|++|++
T Consensus 163 Ak~~g~~~~~~y~~ 176 (177)
T 3hva_A 163 AARKGGSQIKQYNP 176 (177)
T ss_dssp HHTTCSSEEEC---
T ss_pred HHHHCCCEEEEECC
T ss_conf 99978998999598