Query gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 266
No_of_seqs 128 out of 12768
Neff 8.5
Searched_HMMs 33803
Date Wed Jun 1 23:00:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781079.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3ign_A Diguanylate cyclase; g 100.0 1.6E-28 4.9E-33 236.4 8.2 167 98-265 2-176 (177)
2 >1w25_A Stalked-cell different 99.9 5.8E-27 1.7E-31 224.6 9.0 164 102-265 2-174 (175)
3 >3ezu_A Ggdef domain protein; 99.9 2.6E-26 7.8E-31 219.6 9.5 148 109-257 1-155 (156)
4 >3icl_A EAL/ggdef domain prote 99.9 1.5E-25 4.5E-30 213.8 9.0 158 106-264 1-166 (171)
5 >3hva_A Protein FIMX; ggdef di 99.9 8.1E-26 2.4E-30 215.9 7.1 165 95-260 4-176 (177)
6 >3i5c_A Fusion of general cont 99.9 1.3E-24 3.9E-29 206.6 9.9 160 105-264 1-172 (176)
7 >3bre_A Probable two-component 99.9 5.9E-23 1.7E-27 194.1 9.0 156 109-264 1-168 (183)
8 >3hvw_A Diguanylate-cyclase (D 99.8 6.9E-23 2E-27 193.5 0.5 157 105-264 1-165 (176)
9 >3hvb_A Protein FIMX; EAL phos 99.8 4.1E-20 1.2E-24 172.4 0.0 163 94-257 3-172 (437)
10 >2qv6_A MJ0145, GTP cyclohydro 96.1 0.019 5.7E-07 37.6 6.3 111 127-253 3-115 (141)
11 >1yk9_A Adenylate cyclase; bet 94.5 0.14 4.1E-06 31.0 6.4 132 126-260 8-152 (204)
12 >3gqc_A DNA repair protein REV 93.7 0.029 8.7E-07 36.2 1.7 94 127-251 86-183 (198)
13 >2qv6_A MJ0145, GTP cyclohydro 93.5 0.22 6.5E-06 29.5 5.9 101 130-247 3-108 (127)
14 >3et6_A Soluble guanylyl cycla 93.1 0.18 5.4E-06 30.1 5.0 123 126-248 7-143 (190)
15 >3bq0_A POL IV, DBH, DNA polym 93.0 0.037 1.1E-06 35.4 1.3 94 153-265 12-109 (111)
16 >1jx4_A DNA polymerase IV (fam 92.3 0.15 4.3E-06 30.9 3.6 90 131-251 3-95 (115)
17 >1azs_A VC1; complex (lyase/hy 90.1 0.26 7.6E-06 29.0 3.1 131 127-260 33-176 (220)
18 >2w01_A Adenylate cyclase; gua 89.1 0.13 3.7E-06 31.3 0.9 61 126-186 12-73 (208)
19 >2aq4_A DNA repair protein REV 89.1 0.86 2.5E-05 25.0 5.1 106 127-263 50-164 (168)
20 >1y10_A Hypothetical protein R 88.5 0.58 1.7E-05 26.3 3.9 117 126-248 37-153 (231)
21 >1ab8_A Adenylyl cyclase; lyas 88.3 1.6 4.6E-05 23.0 6.0 129 126-257 12-171 (220)
22 >2wz1_A Guanylate cyclase solu 87.9 0.97 2.9E-05 24.6 4.7 127 127-257 11-157 (219)
23 >1wc3_A Adenylate cyclase; sol 87.3 0.9 2.6E-05 24.9 4.3 62 126-187 25-87 (219)
24 >1im4_A DBH; DNA polymerase PA 85.7 0.36 1.1E-05 27.9 1.5 92 129-251 6-101 (107)
25 >1jih_A DNA polymerase ETA; tr 58.2 1.5 4.4E-05 23.2 -1.1 78 156-251 21-131 (137)
26 >3gv5_B DNA polymerase IOTA; Y 55.5 4.8 0.00014 19.3 1.1 77 156-250 43-156 (178)
27 >1ybt_A Hydrolase, alpha/beta 53.5 5.7 0.00017 18.7 1.3 115 126-248 15-134 (184)
28 >1pff_A Methionine gamma-lyase 50.4 10 0.00031 16.7 2.2 104 110-246 32-135 (137)
29 >3bjc_A CGMP-specific 3',5'-cy 46.4 4.8 0.00014 19.3 0.0 86 98-183 324-416 (771)
30 >3cog_A Cystathionine gamma-ly 40.0 20 0.00058 14.6 4.9 108 110-249 32-139 (142)
31 >3du6_A Telomerase reverse tra 39.7 18 0.00054 14.9 2.1 70 126-204 39-112 (162)
32 >2gag_C Heterotetrameric sarco 37.3 16 0.00048 15.3 1.5 30 171-205 42-71 (81)
33 >1t94_A Polymerase (DNA direct 36.6 22 0.00065 14.2 3.0 44 190-251 130-173 (179)
34 >1x31_C Sarcosine oxidase gamm 36.3 17 0.0005 15.1 1.5 30 171-205 42-71 (81)
35 >1e5e_A MGL, methionine gamma- 34.7 24 0.0007 14.0 2.7 67 171-253 77-143 (146)
36 >2wvr_C DNA replication factor 33.9 10 0.0003 16.9 0.0 52 146-204 490-541 (546)
37 >1fx2_A Receptor-type adenylat 29.1 29 0.00085 13.4 5.7 61 126-187 10-71 (235)
38 >1xxa_A ARGR, arginine repress 26.9 22 0.00064 14.3 0.7 47 157-204 29-75 (78)
39 >3i5t_A Aminotransferase; pyri 23.5 8.5 0.00025 17.4 -1.9 49 157-205 122-171 (194)
40 >2id1_A Hypothetical protein; 23.5 36 0.0011 12.7 2.4 71 153-223 5-83 (130)
41 >1wos_A Aminomethyltransferase 23.2 36 0.0011 12.6 1.3 23 168-190 46-68 (90)
42 >1ys1_X Lipase; CIS peptide Le 21.1 33 0.00096 13.0 0.7 16 231-246 162-177 (247)
43 >1cs1_A CGS, protein (cystathi 21.0 40 0.0012 12.3 4.7 117 101-249 18-139 (140)
44 >3gka_A N-ethylmaleimide reduc 20.3 40 0.0012 12.3 1.0 57 144-202 201-259 (361)
45 >1rhc_A F420-dependent alcohol 20.3 41 0.0012 12.2 2.7 29 176-204 301-329 (330)
No 1
>>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8} (A:)
Probab=99.95 E-value=1.6e-28 Score=236.41 Aligned_cols=167 Identities=35% Similarity=0.544 Sum_probs=149.6
Q ss_pred HHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCH
Q ss_conf 999999610401050204899988877-------0897257554422100011468865444311000000011111000
Q gi|254781079|r 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 (266)
Q Consensus 98 ~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~ 170 (266)
+++++++++|||||||||++|.+++++ .+.++++++||||+||.|||.|||..||++|+.+|++|+..+++.+
T Consensus 2 q~l~~la~~D~LTgL~NR~~f~~~l~~~l~~~~~~~~~~~l~~idid~fk~ind~~G~~~gD~~l~~~a~~l~~~~~~~~ 81 (177)
T 3ign_A 2 EQLAKLSXTDRLTGLLNRGTWENLVDAEYERFRRYGQATSLVXFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIRQSD 81 (177)
T ss_dssp ---CTTSSBCTTTCSEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 78998749652548555899999999999998850996799998443320024667807898988887777653045666
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0001334303650168610123444589999986315406799568999999998779-989989999999999999997
Q gi|254781079|r 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249 (266)
Q Consensus 171 ~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~ 249 (266)
.++|++||+|++++++..........+++........+ ..++....+++|+|++.++ ++.++++++.+||.|||+||+
T Consensus 82 ~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~g~~~~~~~~~~~~~ll~~A~~Al~~AK~ 160 (177)
T 3ign_A 82 SAGRYGGEEFGIILPETDAESARVICERIREAIEKSTV-STSAGDIQYTVSXGIAQLTETPENYXQWXQKADEALYKAKE 160 (177)
T ss_dssp EEEECSSSEEEEEEETCCHHHHHHHHHHHHHHHHTCCE-ECSSCEECCCEEEEEEECCSCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 52022588799997898989999999999999982765-45788731678899996479988899999999999999998
Q ss_pred CCCCEEEECCHHHCCC
Q ss_conf 0996899940210056
Q gi|254781079|r 250 SGRNRVVCFSDIENNT 265 (266)
Q Consensus 250 ~gkn~~~~~~~~~~~~ 265 (266)
+|+|++++|++--+++
T Consensus 161 ~G~n~~~~y~~~~~~~ 176 (177)
T 3ign_A 161 SGRNKVVVSLEHHHHH 176 (177)
T ss_dssp TTSSSEEECC------
T ss_pred HCCCEEEEEEECCCCC
T ss_conf 4999699988424447
No 2
>>1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} (A:285-459)
Probab=99.94 E-value=5.8e-27 Score=224.61 Aligned_cols=164 Identities=30% Similarity=0.468 Sum_probs=144.7
Q ss_pred HHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCC
Q ss_conf 99610401050204899988877-------08972575544221000114688654443110000000111110000001
Q gi|254781079|r 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 (266)
Q Consensus 102 ~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R 174 (266)
+++++|||||||||.+|.+++++ .++++++++||||+||.||+.|||+.||++|+.+|++|+..+++.+.++|
T Consensus 2 ~la~~D~lTGL~NR~~f~~~l~~~i~~~~~~~~~~~l~~i~i~~~~~in~~~G~~~gd~ll~~~a~~l~~~~~~~~~~~r 81 (175)
T 1w25_A 2 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCR 81 (175)
T ss_dssp TTCCBCTTTCCBCHHHHHHHHHHHHHHHHTSSCCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSCTTSEEEE
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 75022124563259999986589999987429869870212147767643542156776899999988872899858999
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 33430365016861012344458999998631540-6799568999999998779-989989999999999999997099
Q gi|254781079|r 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252 (266)
Q Consensus 175 ~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gk 252 (266)
+++|+|+++++.....+.....+.+...+...+.. ........+++|+|++.++ ++.++++++.+||.||++||++|+
T Consensus 82 ~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~ll~~A~~Al~~Ak~~G~ 161 (175)
T 1w25_A 82 YGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGR 161 (175)
T ss_dssp CSSSEEEEEETTCCHHHHHHHHHHHHHHHHTSCEECGGGSCEECCCEEEEEEECCSTTCCHHHHHHHHHHHHHHHHHTTS
T ss_pred EECCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 80658999978999999999999999999768936658988999999999997079999899999999999999997299
Q ss_pred CEEEECCHHHCCC
Q ss_conf 6899940210056
Q gi|254781079|r 253 NRVVCFSDIENNT 265 (266)
Q Consensus 253 n~~~~~~~~~~~~ 265 (266)
|++++|+.-.+++
T Consensus 162 n~~~~y~~~~~~~ 174 (175)
T 1w25_A 162 NAVVGKAAHHHHH 174 (175)
T ss_dssp SCEEECCCC----
T ss_pred CEEEECCCCCCCC
T ss_conf 9499711250427
No 3
>>3ezu_A Ggdef domain protein; multidomain protein of unknown function with ggdef-domain, structural genomics; 1.95A {Geobacter sulfurreducens} (A:187-342)
Probab=99.93 E-value=2.6e-26 Score=219.58 Aligned_cols=148 Identities=28% Similarity=0.508 Sum_probs=133.0
Q ss_pred HHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEE
Q ss_conf 1050204899988877-------089725755442210001146886544431100000001111100000013343036
Q gi|254781079|r 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 (266)
Q Consensus 109 LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ 181 (266)
|||||||++|.+++++ .+++++|+++|||+||.|||.|||+.||++|+.++++|+...++.+.++|++||||+
T Consensus 1 LTgL~NR~~f~~~l~~~l~~~~~~~~~~~l~lidiD~fk~iNd~~G~~~gD~~l~~~a~~l~~~~~~~d~~~r~~g~~f~ 80 (156)
T 3ezu_A 1 LTGVXTRAGFFKTVGSLAYAAQRSGSNVGIXLIDLDYFKLVGDNYGHQTGDRILQLVAETITSHLRRSDVVGRYDGDEFV 80 (156)
T ss_dssp TTCSBCHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCCCC-----CHHHHHHHHHHHHHHHTCCTTCEEEECSSSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEE
T ss_conf 23721399999999999999885199589999989986076771281879999999999854036777545535898899
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 5016861012344458999998631540679956899999999877998998999999999999999709968999
Q gi|254781079|r 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 (266)
Q Consensus 182 ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~ 257 (266)
+++|+...........++......... ......+.+++|+|++.+.+++++++++.+||.||++||++|||+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~si~is~g~~~~~~~~~~~~li~~Ad~Al~~AK~~G~N~i~~ 155 (156)
T 3ezu_A 81 VYLSPVEPASLRTVAENLRRSIEEESA-RXVPVTASIGVAQGILGTDVDGGIEELVRLADECLXQAKYTGKNKVVV 155 (156)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHSCSSSEEE
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCC-CEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 970899999999999999999861058-631379999999610479999989999999999999999829997997
No 4
>>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus} (A:)
Probab=99.92 E-value=1.5e-25 Score=213.79 Aligned_cols=158 Identities=27% Similarity=0.402 Sum_probs=137.5
Q ss_pred CCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCC
Q ss_conf 0401050204899988877-------089725755442210001146886544431100000001111100000013343
Q gi|254781079|r 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 (266)
Q Consensus 106 ~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gd 178 (266)
.||||||+||++|.+++++ .+++++|+++|||+||.||+.|||+.||++|+.+|++|+..+++++.++|++++
T Consensus 1 ~D~LTGL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~id~f~~in~~~G~~~gd~~l~~~a~~l~~~~~~~~~~~r~~~~ 80 (171)
T 3icl_A 1 XDTVTGLPNRQLFCDRLLQALAAHERDGNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRDGDTVARIGGD 80 (171)
T ss_dssp CCTTTCCCCHHHHHHHHHHHHHHCCCTTSCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHSCTTCEEEEETTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 94413723399999999999999885099289999805178999871199753047887656532035898889982598
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 03650168610123444589999986315406799568999999998779-98998999999999999999709968999
Q gi|254781079|r 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 (266)
Q Consensus 179 eF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~ 257 (266)
+|++++|..+..+......+........+. ..++....+++|+|++.++ ++.++++++.+||.||+.||++|+|++++
T Consensus 81 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~g~~~~~~~~~~~~~l~~~A~~Al~~Ak~~g~~~i~~ 159 (171)
T 3icl_A 81 KFTILLNGAKDTLNGALVAQKILDGLAQPF-VFGAQQIVISVSIGIAVSPADGETXEQLLRNADTAXYHAKSRGKNNYQF 159 (171)
T ss_dssp EEEEEESSCTTSTTTHHHHHHHHHHHTSCE-EETTEEECCCEEEEEEETTTTCSSHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 899996899868999999999999998764-3202465650689999836999989999999999999999849998999
Q ss_pred CCHHHCC
Q ss_conf 4021005
Q gi|254781079|r 258 FSDIENN 264 (266)
Q Consensus 258 ~~~~~~~ 264 (266)
|++--++
T Consensus 160 y~~~~~~ 166 (171)
T 3icl_A 160 FSPELEH 166 (171)
T ss_dssp CCC----
T ss_pred ECHHHCC
T ss_conf 7757686
No 5
>>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1} (A:)
Probab=99.92 E-value=8.1e-26 Score=215.88 Aligned_cols=165 Identities=21% Similarity=0.305 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 999999999610401050204899988877-------0897257554422100011468865444311000000011111
Q gi|254781079|r 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 (266)
Q Consensus 95 ~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~ 167 (266)
+..+++++++++||+||||||.+|.+.++. .+.++++++++||+|+.+|+.||++.||++|+.+++.|+..++
T Consensus 4 ~~~~~l~~~~~~D~~TGl~Nr~~~~~~l~~~~~~~~~~~~~~~ii~i~i~~~~~i~~~~G~~~~d~il~~~a~~l~~~~~ 83 (177)
T 3hva_A 4 GSEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFG 83 (177)
T ss_dssp --------CCCBCTTTCSEEHHHHHHHHHHHHHHHHHTCCCEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHCCCCCCCCCCCCHHHCCCCHHHCCCC
T ss_conf 89999999838276778146999999999999986741465204433420111014323322233002102100000123
Q ss_pred CCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHH
Q ss_conf 0000001334303650168610123444589999986315406799568999999998779-989989999999999999
Q gi|254781079|r 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246 (266)
Q Consensus 168 ~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~ 246 (266)
+++.++|+++|+|++++|+.+.+++...+.++...+...++ ..++....+++++|++.++ ++.++++++.+|+.||+.
T Consensus 84 ~~~~~~R~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~ll~~A~~Al~~ 162 (177)
T 3hva_A 84 EEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHLF-ELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADD 162 (177)
T ss_dssp GGCEEEECSSSEEEEEEETCCHHHHHHHHHHHHHHHHTCCE-EETTEEECCCEEEEEEEECTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 32212334442467613543211127899999999984111-13697057775477897689999999999999999999
Q ss_pred HHHCCCCEEEECCH
Q ss_conf 99709968999402
Q gi|254781079|r 247 AKKSGRNRVVCFSD 260 (266)
Q Consensus 247 AK~~gkn~~~~~~~ 260 (266)
||++|+|+|++|++
T Consensus 163 Ak~~g~~~~~~y~~ 176 (177)
T 3hva_A 163 AARKGGSQIKQYNP 176 (177)
T ss_dssp HHTTCSSEEEC---
T ss_pred HHHHCCCEEEEECC
T ss_conf 99978998999598
No 6
>>3i5c_A Fusion of general control protein GCN4 and WSPR response regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A* (A:31-206)
Probab=99.91 E-value=1.3e-24 Score=206.58 Aligned_cols=160 Identities=34% Similarity=0.488 Sum_probs=130.7
Q ss_pred HCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCH-HHCCCC
Q ss_conf 10401050204899988877-------0897257554422100011468865444311000000011111000-000133
Q gi|254781079|r 105 RIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLG 176 (266)
Q Consensus 105 ~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~-~~~R~~ 176 (266)
++|||||||||.+|.+++++ .+.++++++||||+||.||+.|||+.||++|+.++++++...+... +++|.+
T Consensus 1 ~~D~LTgL~NR~~f~~~l~~~l~~~~~~~~~~~ii~idid~fk~iN~~~G~~~gD~~l~~~a~~l~~~~~~~~~~~~~~~ 80 (176)
T 3i5c_A 1 NSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYG 80 (176)
T ss_dssp CBCTTTCSBCHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEE
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECC
T ss_conf 30867786764115443357789987437973577630333432223320100216888766402322444464125458
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCEEEEEEE--EEEEECC-CCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4303650168610123444589999986315406-79956899999--9998779-989989999999999999997099
Q gi|254781079|r 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITIS--AGIAERC-HKEPISTIIYRADQALYVAKKSGR 252 (266)
Q Consensus 177 gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~t~s--~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gk 252 (266)
+|+|++++|+.........+.++...+....... ..+....+..+ +|++.++ ++.++++++++||.||+.||++|+
T Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~Al~~AK~~g~ 160 (176)
T 3i5c_A 81 GEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGR 160 (176)
T ss_dssp TTEEEEEEETCCHHHHHHHHHHHHHHHHHTCCEECSSSTTEECCEEEEEEEECCCSTTCCTHHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 96411015776306799999873112224322223335444431012035754888887799999999999999998589
Q ss_pred CEEEECCHHHCC
Q ss_conf 689994021005
Q gi|254781079|r 253 NRVVCFSDIENN 264 (266)
Q Consensus 253 n~~~~~~~~~~~ 264 (266)
|++++|++.-++
T Consensus 161 n~~~~~~~~~~~ 172 (176)
T 3i5c_A 161 NQVGLMEQPVPP 172 (176)
T ss_dssp SSEEEC------
T ss_pred CEEEEECCCCCC
T ss_conf 979991799999
No 7
>>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A* (A:176-358)
Probab=99.89 E-value=5.9e-23 Score=194.06 Aligned_cols=156 Identities=33% Similarity=0.483 Sum_probs=128.4
Q ss_pred HHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC-HHHCCCCCCEE
Q ss_conf 1050204899988877-------089725755442210001146886544431100000001111100-00001334303
Q gi|254781079|r 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEF 180 (266)
Q Consensus 109 LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~-~~~~R~~gdeF 180 (266)
|||||||.+|.++++. .+++++|+++|||+||.||+.||++.||++|+.+|+++....+.+ ++++|.|+|+|
T Consensus 1 LTGL~NR~~f~~~l~~~l~~~~~~~~~~~l~~idid~f~~in~~~G~~~gD~~l~~~a~~l~~~~~~~~~~~~~~~~d~~ 80 (183)
T 3bre_A 1 LTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEF 80 (183)
T ss_dssp TTCSBCHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEE
T ss_conf 44744289999999999999986199789999988515888760274113424889999999706776637883588637
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCC-C--CCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 65016861012344458999998631540-6--799568999999998779-9899899999999999999970996899
Q gi|254781079|r 181 AAAALGSSEQEAAILANDLRKIIENSQIN-I--SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 (266)
Q Consensus 181 ~ill~~~~~~~~~~~~~~l~~~l~~~~~~-~--~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gkn~~~ 256 (266)
++++|+.+.+......+++...+...... . .....+..++++|++.++ ++.++++++++|+.||+.||++|+|+++
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ll~~A~~Al~~Ak~~g~n~~~ 160 (183)
T 3bre_A 81 AMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQVG 160 (183)
T ss_dssp EEEEETCCHHHHHHHHHHHHHHHHTTCCEESSSSTTEECCEEEEEEEECCCSSSCCTHHHHHHHHHHHHHHHTTTSSSEE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 78615886056899999999999862455346887548999999999777999975999999999999999984899799
Q ss_pred ECCHHHCC
Q ss_conf 94021005
Q gi|254781079|r 257 CFSDIENN 264 (266)
Q Consensus 257 ~~~~~~~~ 264 (266)
+|++--++
T Consensus 161 ~y~~~~~~ 168 (183)
T 3bre_A 161 LMEQPVPP 168 (183)
T ss_dssp EECC----
T ss_pred EECCCCCH
T ss_conf 95898996
No 8
>>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa} (A:)
Probab=99.85 E-value=6.9e-23 Score=193.52 Aligned_cols=157 Identities=12% Similarity=0.139 Sum_probs=130.8
Q ss_pred HCCCHHCCCCHHHHHHHHHHC------CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCC
Q ss_conf 104010502048999888770------89725755442210001146886544431100000001111100000013343
Q gi|254781079|r 105 RIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 (266)
Q Consensus 105 ~~D~LTgL~NR~~f~~~l~~~------~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gd 178 (266)
..|||||||||.+|.+++++. +++++++++|||+||.||+.||++.||++|+.++++|+...++. .++|.+++
T Consensus 1 ~~D~lTGL~Nr~~f~~~l~~~l~~~~~~~~~~l~~i~i~~f~~in~~~G~~~gd~ll~~~a~~l~~~~~~~-~~~~~~~~ 79 (176)
T 3hvw_A 1 XIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLNTIIRTLGYPFSNDLXLEARDRIRAELPDF-TLYKISPT 79 (176)
T ss_dssp --------CCHHHHHHHHHHHHHHHSEEEEEEEECSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCTTS-CEEEEETT
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-EEEEECCC
T ss_conf 98573362259999999999998379997799999888658899885197430258999999998603576-58997288
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC--CCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 03650168610123444589999986315406799568999999998779--9899899999999999999970996899
Q gi|254781079|r 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 (266)
Q Consensus 179 eF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~--~~~~~~~ll~~Ad~Al~~AK~~gkn~~~ 256 (266)
+|+++++....++....+..+........ ........+++|+|++.+. .++++++++.+|+.||+.||+.|+|+++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~ll~~A~~Al~~Ak~~g~~~~~ 157 (176)
T 3hvw_A 80 RFGLLLPRQQQEETESVCLRLLRAFESPV--VCRGIPIKANVGLGVLPLADDTLDGDQDWLRLVVSAADDARDRGVGWAR 157 (176)
T ss_dssp EEEEEEEGGGGGGHHHHHHHHHHHTTSCE--EETTEEECCCCEEEEEEEEGGGTGGGSCCHHHHHHHHHHHHHHTCSCEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCE--EECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89998499999999999999999972702--4788248886379999806998871999999999999999972999899
Q ss_pred ECCHHHCC
Q ss_conf 94021005
Q gi|254781079|r 257 CFSDIENN 264 (266)
Q Consensus 257 ~~~~~~~~ 264 (266)
+.++++.+
T Consensus 158 ~~~~~~~~ 165 (176)
T 3hvw_A 158 YNPPLDQA 165 (176)
T ss_dssp CCCCSSTT
T ss_pred ECHHHHHH
T ss_conf 89166499
No 9
>>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1} (A:)
Probab=99.76 E-value=4.1e-20 Score=172.35 Aligned_cols=163 Identities=19% Similarity=0.263 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 9999999999610401050204899988877-------089725755442210001146886544431100000001111
Q gi|254781079|r 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 (266)
Q Consensus 94 ~~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~ 166 (266)
.+..+++++++++||+|||+||.+|.+++++ .+++++++++|||+|+.+|+.||++.||++|+.+++++....
T Consensus 3 ~~~~~~l~~~a~~D~lTgL~NR~~f~~~l~~~~~~~~~~~~~~~li~i~id~~~~in~~~G~~~~d~ll~~ia~~l~~~~ 82 (437)
T 3hvb_A 3 MGSEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQF 82 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 68999999984627344740399999999999998885599779999979876699986290999999999999999867
Q ss_pred CCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 10000001334303650168610123444589999986315406799568999999998779989989999999999999
Q gi|254781079|r 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 (266)
Q Consensus 167 ~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~ 246 (266)
++++.++|++|++|++++|+.+..++...+.++...+...+... .+.....+.++|++....+.........+..++..
T Consensus 83 ~~~~~i~R~~~~~f~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (437)
T 3hvb_A 83 GEEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHLFEL-NGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCAD 161 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 99877999878654011478970024678899999998543101-47643223331242037554311455555543111
Q ss_pred HHHCCCCEEEE
Q ss_conf 99709968999
Q gi|254781079|r 247 AKKSGRNRVVC 257 (266)
Q Consensus 247 AK~~gkn~~~~ 257 (266)
++..+++....
T Consensus 162 ~~~~~~~~~~~ 172 (437)
T 3hvb_A 162 DAARKGGSQIK 172 (437)
T ss_dssp -----------
T ss_pred HHHHCCCCCCC
T ss_conf 12220245412
No 10
>>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii} (A:128-268)
Probab=96.08 E-value=0.019 Score=37.56 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=72.9
Q ss_pred CCEEEEEEECCCCCC-CCCCCC-CCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 972575544221000-114688-654443110000000111110000001334303650168610123444589999986
Q gi|254781079|r 127 EKLSIVFFDIDYFKQ-INDNFG-HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 (266)
Q Consensus 127 ~~~~l~~idid~fk~-iNd~~G-~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~ 204 (266)
.+..++=+||++... .-|..+ ++.-=++.+..+...+.....+.+.+=+|||.|..++|+.++++...+.+.++...
T Consensus 3 ~~v~iAH~Dind~T~~~Td~~~~~dt~~~i~~ly~~L~~~~~~~g~l~Ff~GGDN~iav~n~~~~~~~~~~i~~I~n~~- 81 (141)
T 2qv6_A 3 GYVQIAHIDINNITGTLTDIVSAYDTYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPSNGMSEEDFLDIFNRINKKY- 81 (141)
T ss_dssp CCEEEEEEEETTHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTTCCCEEEETTEEEEECTTCCHHHHHHHHHHHHHHH-
T ss_pred CCEEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHC-
T ss_conf 7459999842265212014777248999999999999999987598899735856999889864778999999877650-
Q ss_pred HCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3154067995689999999987799899899999999999999970996
Q gi|254781079|r 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 (266)
Q Consensus 205 ~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gkn 253 (266)
.+.+.+.+|++ .++.+....|+.||..-+..+..
T Consensus 82 ----------~v~lkvGIG~g-----~ta~~A~~~At~aLe~iR~~~~~ 115 (141)
T 2qv6_A 82 ----------KIELKAGIGIG-----RTAEDASNLADIGLEKIRGKLVD 115 (141)
T ss_dssp ----------CCCEEEEEEEE-----SSHHHHHHHHHHHHHHHHTTCSS
T ss_pred ----------CCEEEEEECCC-----CCHHHHHHHHHHHHHHHHHCCCC
T ss_conf ----------93389865458-----88799999999899999711645
No 11
>>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis} (A:)
Probab=94.48 E-value=0.14 Score=31.02 Aligned_cols=132 Identities=9% Similarity=0.044 Sum_probs=76.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCC--CHH---HHHHHHHHH
Q ss_conf 8972575544221000114688654443110000000111110-0000013343036501686--101---234445899
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGS--SEQ---EAAILANDL 199 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~--~~~---~~~~~~~~l 199 (266)
.+..+++++||.+|..+-+..|.+.--.++...-+.+...+.. +..+.++-||.+..+++.. ... .+...+..+
T Consensus 8 ~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~~~~~~GD~~~~~f~~~~~~~~~~~~a~~~~~~~ 87 (204)
T 1yk9_A 8 YDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALADFALDM 87 (204)
T ss_dssp CSCEEEEEEEESCSSCSSCCCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCTTHHHHHHTHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 68589999972770598885999999999999999974433304763211100134440489720124678889888877
Q ss_pred HHHHHHCCCCCCCCCEEEEEEEEEEEECC--CC-----CCHHHHHHHHHHHHHHHHHCCCCEEEECCH
Q ss_conf 99986315406799568999999998779--98-----998999999999999999709968999402
Q gi|254781079|r 200 RKIIENSQINISSGPSIHITISAGIAERC--HK-----EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 (266)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~t~s~Gia~~~--~~-----~~~~~ll~~Ad~Al~~AK~~gkn~~~~~~~ 260 (266)
................+.+.++.|-+... .. +-..+.+..|-.-+..|+ .++|.+=.+
T Consensus 88 ~~~~~~~~~~~~~~l~~riGi~~G~v~~g~~g~~~~~~~~~G~~Vn~Aarl~~~a~---~~~Ilvs~~ 152 (204)
T 1yk9_A 88 TNVAAQLKDPRGNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDS---VGQIQVPDE 152 (204)
T ss_dssp HHHTTTCCSSSCCCCCEEEEEEEECEEECCCCSSSCCCCEEEHHHHHTTHHHHSCS---TTCEEBCHH
T ss_pred HHHHHHHHHCCCCCCEEEEEEEEECCEECCCCCCCCCCCCEECHHHHHHHHHHCCC---CCEEEECHH
T ss_conf 88766433202887107887643031441323432344635368888899973478---976998699
No 12
>>3gqc_A DNA repair protein REV1; protein-DNA complex, alternative splicing, DNA damage, DNA repair, DNA synthesis; HET: DNA DOC DCP; 2.50A {Homo sapiens} (A:1-96,A:213-314)
Probab=93.68 E-value=0.029 Score=36.18 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=65.6
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCCC---HHHHHHHHHHHHHH
Q ss_conf 972575544221000114688654443110000000111110-00000133430365016861---01234445899999
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKI 202 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~~---~~~~~~~~~~l~~~ 202 (266)
..-.++=||+|||..+ ++++..+.+.+.. ...+-.++=||+.+=+++.. ...+..++.+|++.
T Consensus 86 ~~~~imhidmddf~~Y-------------~~~S~~i~~il~~y~p~iE~~SiDE~fiDlT~~~~~~~~~~~~~A~~IR~~ 152 (198)
T 3gqc_A 86 HQSCIMHVDMDDFHAY-------------KEVAQTLYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRME 152 (198)
T ss_dssp -CCCEEEEEETCHHHH-------------HHHHHHHHHHHHTTCSCEEEEETTEEEEECHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHH-------------HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHCCCCHHHHHHHHHHH
T ss_conf 7718999805788999-------------999999999999868865125763068974564111289799999999875
Q ss_pred HHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 8631540679956899999999877998998999999999999999709
Q gi|254781079|r 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 (266)
Q Consensus 203 l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~g 251 (266)
+.+. ..+++|+||+.. .-.|..|...+|-.|
T Consensus 153 I~~~---------tglt~SvGIa~N---------klLAKlAS~~aKPnG 183 (198)
T 3gqc_A 153 IKDQ---------TKCAASVGIGSN---------ILLARMATRKAKPDG 183 (198)
T ss_dssp HHHH---------HSCCEEEEEESS---------HHHHHHHHHHHCSSC
T ss_pred HHHC---------CCCCEEECCCCC---------HHHHHHHHHHHCCCC
T ss_conf 5640---------587121466450---------999999998615155
No 13
>>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii} (A:1-127)
Probab=93.47 E-value=0.22 Score=29.50 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=69.9
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCC-----CCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5755442210001146886544431100000001-----11110000001334303650168610123444589999986
Q gi|254781079|r 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-----VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 (266)
Q Consensus 130 ~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~-----~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~ 204 (266)
-+.+|+|||.+.--++.|+..- -.|+.+=.+|. .....+.++.-+++|.|..+.-+.++++...+.+.|....
T Consensus 3 qvt~I~l~~Y~~WTetlg~rRE-~~iQ~lQ~~l~~~l~~~~~~~~gl~f~~R~Dn~iavtNGi~~e~~~~i~~~I~~~~- 80 (127)
T 2qv6_A 3 QITVIQIDNYGPWTVTPNPRRE-SDLQALQSRLYADLNLMFGAHKGLVFYTRFDNLIAITNGIDLITHKRIQESIRNRY- 80 (127)
T ss_dssp EEEEEEETTHHHHHHSSSCCCH-HHHHHHHHHHHHHHHHHHHTTTCEEECTTSSEEEEECTTCCHHHHHHHHHHHHHHS-
T ss_pred EEEEEEECCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCC-
T ss_conf 5899986587766577898708-89999999999999999863696884202340788855999799999999986359-
Q ss_pred HCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3154067995689999999987799899899999999999999
Q gi|254781079|r 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 (266)
Q Consensus 205 ~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~A 247 (266)
+ +.+++++|++ +++.+....|..+|..+
T Consensus 81 --P--------V~i~~~iG~g-----~TP~eA~~~A~~~L~~~ 108 (127)
T 2qv6_A 81 --P--------FTVSMVIASA-----ETPYEAQKLATETLQEY 108 (127)
T ss_dssp --S--------SCEEEEEEEE-----SSHHHHHHHHHHHHHHH
T ss_pred --C--------CEEEEEEEEC-----CCHHHHHHHHHHHHHHC
T ss_conf --8--------3279999834-----98799999999998741
No 14
>>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B (A:)
Probab=93.10 E-value=0.18 Score=30.14 Aligned_cols=123 Identities=10% Similarity=0.084 Sum_probs=75.3
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHH-CCCCCCEEEEECCC--C---CHHHHHHHHHH
Q ss_conf 8972575544221000114688654443110000000111110-0000-01334303650168--6---10123444589
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFV-GRLGGEEFAAAALG--S---SEQEAAILAND 198 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~-~R~~gdeF~ill~~--~---~~~~~~~~~~~ 198 (266)
.+..+++++||.+|..+-+.++.+.--+++....+.+.+.+.. +..+ -.++||-++++... . ....+...+..
T Consensus 7 ~~~~tvlf~Di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~~~~~~gd~~~~~~~~~~~~~~~~~~~a~~~al~ 86 (190)
T 3et6_A 7 HPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDHADVLLEFALR 86 (190)
T ss_dssp EEEEEEEEEEETTHHHHTTTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCSTHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 79799999990781698886999999999999999855777741334989986122678750231004678899988889
Q ss_pred HHHHHHHCCCCCCCCCEEEEEEEEEEEECC--CC--C---CHHHHHHHHHHHHHHHH
Q ss_conf 999986315406799568999999998779--98--9---98999999999999999
Q gi|254781079|r 199 LRKIIENSQINISSGPSIHITISAGIAERC--HK--E---PISTIIYRADQALYVAK 248 (266)
Q Consensus 199 l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~--~~--~---~~~~ll~~Ad~Al~~AK 248 (266)
+.+...+..........+.+.++.|-+... .. . -..+-...|-.-...|+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~iGih~G~v~~g~iG~~~~~~~~~G~~Vn~AarL~~~a~ 143 (190)
T 3et6_A 87 MHEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGE 143 (190)
T ss_dssp HHHHHHTSCCC---CCCEEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf 999999876513886478861134269983215761467997346899999984289
No 15
>>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} (A:1-10,A:78-169,A:236-244)
Probab=92.97 E-value=0.037 Score=35.44 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=66.1
Q ss_pred CCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 3110000000111110-000001334303650168---610123444589999986315406799568999999998779
Q gi|254781079|r 153 KVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALG---SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 (266)
Q Consensus 153 ~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~ 228 (266)
++-+.+++.+.+.+.+ ...+-.+|-||+.+=+.+ ....++..++.+|++.+.+. ..+++|+|++..
T Consensus 12 ~lY~~~S~~i~~il~~~~~~ve~~SiDE~~lDlT~~~~~~~~~~~~~a~~ir~~I~~~---------tglt~SvGIg~N- 81 (111)
T 3bq0_A 12 PIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEK---------EKITVTVGVAPN- 81 (111)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHHHHHHHHHHHHHHHHHH---------HCCCEEEEEESS-
T ss_pred HHHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCHHHCCCCHHHHHHHHHHHHHHH---------HCCCEEECCCCC-
T ss_conf 7899999976542103587410245762577403430003565999999999999985---------286334402786-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCC
Q ss_conf 9899899999999999999970996899940210056
Q gi|254781079|r 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 (266)
Q Consensus 229 ~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~~~~~~~~ 265 (266)
- -.|..|...+|-+| -.++..+++++++
T Consensus 82 ------k--lLAKlAs~~~KP~G-~~vi~~~~v~~k~ 109 (111)
T 3bq0_A 82 ------K--ILAKIIADKSKPNG-LGVIRPEPVENKS 109 (111)
T ss_dssp ------H--HHHHHHHHTTCSSC-EEECCGCCCCSEE
T ss_pred ------C--CHHHHHHHHCCCCC-CCCCCCCCCCCCC
T ss_conf ------1--00354775144320-0235736422225
No 16
>>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase/DNA complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} (A:1-10,A:78-182)
Probab=92.29 E-value=0.15 Score=30.86 Aligned_cols=90 Identities=21% Similarity=0.218 Sum_probs=60.8
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCC--CHHHHHHHHHHHHHHHHHCC
Q ss_conf 75544221000114688654443110000000111110-0000013343036501686--10123444589999986315
Q gi|254781079|r 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKIIENSQ 207 (266)
Q Consensus 131 l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~--~~~~~~~~~~~l~~~l~~~~ 207 (266)
++++|.|..+. -..+++.+.+.+.. ...+-.+|-||+.+=+.+. ...++..++++|++.+.+.
T Consensus 3 ~~~~~~~~~e~-------------Y~~~S~~i~~il~~~~p~ve~~SiDE~fldvt~~~~~~~~~~~~a~~ir~~I~~~- 68 (115)
T 1jx4_A 3 VLFVDFDYKEV-------------YQQVSSRIXNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEK- 68 (115)
T ss_dssp EEEEEETTHHH-------------HHHHHHHHHHHHTTTCSCEEEEETTEEEEECTTTCSSHHHHHHHHHHHHHHHHHH-
T ss_pred EEEEECCCHHH-------------HHHHHHHHHHHHHCCCCCEEECCCCCEEEECCCCHHHCCHHHHHHHHHHHHHHHH-
T ss_conf 99994786899-------------9999999998875469818962897645312442011136999999999999998-
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 40679956899999999877998998999999999999999709
Q gi|254781079|r 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 (266)
Q Consensus 208 ~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~g 251 (266)
..+++|+|++.. ...|..|...+|-+|
T Consensus 69 --------~gl~~SvGIa~n---------k~lAKiAs~~aKP~G 95 (115)
T 1jx4_A 69 --------EKITVTVGISKN---------KVFAKIAADXAKPNG 95 (115)
T ss_dssp --------HCCCEEEEEESS---------HHHHHHHHHHHCSSC
T ss_pred --------HCCCEEEEECCC---------HHHHHHHHHHCCCCC
T ss_conf --------699758852672---------677999997458774
No 17
>>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis familiaris} (A:)
Probab=90.13 E-value=0.26 Score=29.00 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=78.6
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCC-CH----HHHHHHHHHHH
Q ss_conf 972575544221000114688654443110000000111110-0000013343036501686-10----12344458999
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGS-SE----QEAAILANDLR 200 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~-~~----~~~~~~~~~l~ 200 (266)
...+++++||-+|..+-+.++.+.--+++..+-+.+...+.+ +..+.++-||.+..+++.. +. ..+...+.++.
T Consensus 33 ~~vtilf~Di~~ft~l~~~~~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~GD~~l~~f~~p~~~~~~~~~a~~~a~~~~ 112 (220)
T 1azs_A 33 DNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMI 112 (220)
T ss_dssp EEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 97899999827737998859999999999999999989987157400011210278983787642034788999988899
Q ss_pred HHHHHCCCCCCCCCEEEEEEEEEEEEC---CC-CCC---HHHHHHHHHHHHHHHHHCCCCEEEECCH
Q ss_conf 998631540679956899999999877---99-899---8999999999999999709968999402
Q gi|254781079|r 201 KIIENSQINISSGPSIHITISAGIAER---CH-KEP---ISTIIYRADQALYVAKKSGRNRVVCFSD 260 (266)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~t~s~Gia~~---~~-~~~---~~~ll~~Ad~Al~~AK~~gkn~~~~~~~ 260 (266)
...............+.+.++.|-+.. .. ..+ ..+-+..|..-. .....++|.+=.+
T Consensus 113 ~~~~~~~~~~~~~l~~riGi~~G~v~~g~~g~~~~~~~~~G~~Vn~A~rl~---~~a~~~~I~vs~~ 176 (220)
T 1azs_A 113 EAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHME---AGGKAGRIHITKA 176 (220)
T ss_dssp HHHHHHHHHHCSCCEEEEEEEEEEEEEEECSSSSCCCEEESHHHHHHHHHH---HTCCTTSEEECST
T ss_pred HHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHH---HCCCCCCEEECHH
T ss_conf 998642203465410002410523435655652330126533232567877---4268995275499
No 18
>>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP} (A:)
Probab=89.13 E-value=0.13 Score=31.34 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=48.7
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCC
Q ss_conf 8972575544221000114688654443110000000111110-000001334303650168
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALG 186 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~ 186 (266)
....+++++||.+|..+-+.++.+.--+++..+-+.+...+.. +..+-.+.||.+.++++.
T Consensus 12 ~~~vtvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~GD~~~~~f~~ 73 (208)
T 2w01_A 12 RRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGA 73 (208)
T ss_dssp EEEEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESS
T ss_pred EEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHCEEEHCCCCCEEEEEEEEEEEEECC
T ss_conf 99999999980673498765999999999999987614010000321010121477799777
No 19
>>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* (A:1-61,A:133-239)
Probab=89.05 E-value=0.86 Score=25.00 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=66.0
Q ss_pred CCEEEEEEECCC-CCCCCCCCCCCCCCCCCCHHHCCCCCCCCC---CHHHCCCCCCEEEEECCCC-----CHHHHHHHHH
Q ss_conf 972575544221-000114688654443110000000111110---0000013343036501686-----1012344458
Q gi|254781079|r 127 EKLSIVFFDIDY-FKQINDNFGHPVGDKVIAFLSDQLVVVFGT---PMFVGRLGGEEFAAAALGS-----SEQEAAILAN 197 (266)
Q Consensus 127 ~~~~l~~idid~-fk~iNd~~G~~~gD~~L~~va~~l~~~~~~---~~~~~R~~gdeF~ill~~~-----~~~~~~~~~~ 197 (266)
..-.++=||+|= |..+ .++++.+.+.+.. .+.+-.++-||..+=+.+. ....+..+++
T Consensus 50 ~~~~i~HvD~Dcdf~~Y-------------~~~S~~i~~il~~~~~~~~Ie~vSiDEa~iDlt~~~~~~~~~~~~~~ia~ 116 (168)
T 2aq4_A 50 DTYIIFHIDFDCTFEQF-------------QLKSEAFYSTLKRLNIFNLILPISIDEAVCVRIIPDNIHNTNTLNARLCE 116 (168)
T ss_dssp CEEEEEEEEETTCHHHH-------------HHHHHHHHHHHHHTTCCSEEEEEETTEEEEEEEECC------CHHHHHHH
T ss_pred CCEEEEEECCCCCHHHH-------------HHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 97699998467177999-------------99999999999873589838997333678985322001672357999999
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHC
Q ss_conf 999998631540679956899999999877998998999999999999999709968999402100
Q gi|254781079|r 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 (266)
Q Consensus 198 ~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~~~~~~ 263 (266)
+|++.+.+.. .| +++|+||+.. .-.|..|...||-.|- .++..+++++
T Consensus 117 ~IR~~I~~~T----~G----~t~SvGIg~N---------klLAKlAs~~aKPnG~-~~i~~~~v~~ 164 (168)
T 2aq4_A 117 EIRQEIFQGT----NG----CTVSIGCSDS---------LVLARLALKMAKPNGY-NITFKSNLSE 164 (168)
T ss_dssp HHHHHHHHHH----SS----CCEEEEEESS---------HHHHHHHHHHHCSSCE-ECCCGGGCCH
T ss_pred HHHHHHHHCC----CC----CCEEEEECCH---------HHHHHHHHHHCCCCEE-EEECCHHHHH
T ss_conf 9988876334----76----1247763532---------7889987764578606-9843213467
No 20
>>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A* (A:177-407)
Probab=88.46 E-value=0.58 Score=26.29 Aligned_cols=117 Identities=12% Similarity=0.154 Sum_probs=77.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89725755442210001146886544431100000001111100000013343036501686101234445899999863
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~ 205 (266)
.+..+++++||.+|..+-+..|.+.-.+++..+-.......+.+..+-.+-||.|.+++.... .+...+.++......
T Consensus 37 ~~~vtilF~Di~~ft~~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~~~k~~GD~~ma~f~~~~--~~~~~~~~~~~~~~~ 114 (231)
T 1y10_A 37 ARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTAPPVWFIKTIGDAVMLVCPDPA--PLLDTVLKLVEVVDT 114 (231)
T ss_dssp CEEEEEEEEEECSBCTTSCBCCHHHHHHHHHHHHHHHHHHCCTTCEEEEEETTEEEEEESSHH--HHHHHHHHHHHHHHT
T ss_pred CEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEECCCHH--HHHHHHHHHHHHHHH
T ss_conf 547999999806858998869999999999999999999998098799872768888179979--999999998999983
Q ss_pred CCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1540679956899999999877998998999999999999999
Q gi|254781079|r 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 (266)
Q Consensus 206 ~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK 248 (266)
.. ......+..++|-....+.+-+.+-+..|..-+..||
T Consensus 115 ~~----~~~~~~~~~~~G~~~~~~~~v~G~~VN~AaRl~~~a~ 153 (231)
T 1y10_A 115 DN----NFPRLRAGVASGMAVSRAGDWFGSPVNVASRVTGVAR 153 (231)
T ss_dssp CT----TSCCEEEEEEEEEEEEETTEEEEHHHHHHHHHHHHCC
T ss_pred CC----CCCCEEEEEEEEEEEEECCCEECCHHHHHHHHHCCCC
T ss_conf 26----7853343004412484379678878889999970479
No 21
>>1ab8_A Adenylyl cyclase; lyase, plasmid, complex (transferase/inhibitor); HET: FOK; 2.20A {Rattus norvegicus} (A:)
Probab=88.34 E-value=1.6 Score=23.04 Aligned_cols=129 Identities=12% Similarity=0.019 Sum_probs=67.0
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCC----CCHHHCCCC---CCC-CCCHHHCCCCCCEEEEECCCC--CHH-----
Q ss_conf 89725755442210001146886544431----100000001---111-100000013343036501686--101-----
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKV----IAFLSDQLV---VVF-GTPMFVGRLGGEEFAAAALGS--SEQ----- 190 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~----L~~va~~l~---~~~-~~~~~~~R~~gdeF~ill~~~--~~~----- 190 (266)
....+++++||.+|..+-+.+|....-+- |..+...+. ..+ ..+..+-++-||.+.++++.. ...
T Consensus 12 ~~~vtilf~Di~gfT~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gg~~~k~~GD~~l~~f~~~~~~~~~~~~~ 91 (220)
T 1ab8_A 12 YDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQE 91 (220)
T ss_dssp EEEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCCSCCC-----
T ss_pred CCCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCHHHHC
T ss_conf 58789999873786488974787579999999999999999999998751574556773565899965888875201324
Q ss_pred ---------HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC----CC---CCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf ---------23444589999986315406799568999999998779----98---998999999999999999709968
Q gi|254781079|r 191 ---------EAAILANDLRKIIENSQINISSGPSIHITISAGIAERC----HK---EPISTIIYRADQALYVAKKSGRNR 254 (266)
Q Consensus 191 ---------~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~----~~---~~~~~ll~~Ad~Al~~AK~~gkn~ 254 (266)
.+..+..++.+..............+.+.+..|-+... .. .-..+-+..|...+..|+. ++
T Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~~G~~~~~~~~~G~~Vn~Aarle~~a~~---~~ 168 (220)
T 1ab8_A 92 PERQYMHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVL---DK 168 (220)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTCCT---TC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEECCCCCCCCCCCEECHHHHHHHHHHHCCCC---CE
T ss_conf 566899999999999999987665202689973599887540321311366663343507689999999834898---46
Q ss_pred EEE
Q ss_conf 999
Q gi|254781079|r 255 VVC 257 (266)
Q Consensus 255 ~~~ 257 (266)
+.+
T Consensus 169 ili 171 (220)
T 1ab8_A 169 IQV 171 (220)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 998
No 22
>>2wz1_A Guanylate cyclase soluble subunit beta-1; alternative splicing, lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-binding, GUCY1B3; 1.63A {Homo sapiens} (A:)
Probab=87.88 E-value=0.97 Score=24.61 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=69.1
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCC-------CCC-CCCHHHCCCCCCEEEEECCCC--CH---HHHH
Q ss_conf 9725755442210001146886544431100000001-------111-100000013343036501686--10---1234
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-------VVF-GTPMFVGRLGGEEFAAAALGS--SE---QEAA 193 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~-------~~~-~~~~~~~R~~gdeF~ill~~~--~~---~~~~ 193 (266)
...+++++||.+|..+-+.++.....+.+..+-+.|. ..+ ..+..+.++-||-+.++++.. .. ..+.
T Consensus 11 ~~vtilf~Di~gft~l~~~~~~~~~~~~~~~~l~~l~~~~~~i~~~~~~~~g~i~k~~GD~~l~~f~~~~~~~~~~~~a~ 90 (219)
T 2wz1_A 11 DNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARSIC 90 (219)
T ss_dssp EEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSCCTTHHHHHH
T ss_pred CCEEEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHH
T ss_conf 76899999826947999767972209999999999999999999876145523663205455503389851246899999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC----CCC---CCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 4458999998631540679956899999999877----998---998999999999999999709968999
Q gi|254781079|r 194 ILANDLRKIIENSQINISSGPSIHITISAGIAER----CHK---EPISTIIYRADQALYVAKKSGRNRVVC 257 (266)
Q Consensus 194 ~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~----~~~---~~~~~ll~~Ad~Al~~AK~~gkn~~~~ 257 (266)
..+..+...+...... .....+.+.++.|-+.. ... +-..+-+..|...+..|| ++++.+
T Consensus 91 ~~a~~~~~~~~~~~~~-~~~l~~~igi~~G~v~~g~vg~~~~~~~~~G~~Vn~AaRl~~~a~---~~~I~v 157 (219)
T 2wz1_A 91 HLALDMMEIAGQVQVD-GESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGE---KGKINV 157 (219)
T ss_dssp HHHHHHHHHHTTCEET-TEECCEEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTSC---TTSEEE
T ss_pred HHHHHHHHHHHHHHHC-CCCEEEEEEEEEEEEEEEEECCCCCCCCEECCHHHHHHHHHHCCC---CCEEEE
T ss_conf 8889888876543101-211046320577568998852555455240578999999983477---986998
No 23
>>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} (A:)
Probab=87.28 E-value=0.9 Score=24.86 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=50.5
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCC
Q ss_conf 8972575544221000114688654443110000000111110-0000013343036501686
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGS 187 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~ 187 (266)
.++.+++++||.+|..+-+.++++.-.+++...-+.+...+.. +..+-+.-||.|..+++..
T Consensus 25 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~~~~GD~~~~~f~~~ 87 (219)
T 1wc3_A 25 PRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAP 87 (219)
T ss_dssp EEEEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSS
T ss_pred EEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCC
T ss_conf 179999999937737988869999999999999999988776400013035400356761476
No 24
>>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} (A:1-15,A:83-174)
Probab=85.68 E-value=0.36 Score=27.92 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=60.3
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC-HHHCCCCCCEEEEECCCC---CHHHHHHHHHHHHHHHH
Q ss_conf 25755442210001146886544431100000001111100-000013343036501686---10123444589999986
Q gi|254781079|r 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGS---SEQEAAILANDLRKIIE 204 (266)
Q Consensus 129 ~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~-~~~~R~~gdeF~ill~~~---~~~~~~~~~~~l~~~l~ 204 (266)
--++++|.|. ..+-.++++++.+.+.+- ..+-.++-||+.+=+.+. ...++..++++|++.+.
T Consensus 6 ~~~~~~~~~~-------------~~lY~~~S~~i~~i~~~~~p~ve~~SiDE~~lDlt~~~~~~~~~~~~~a~~Ir~~I~ 72 (107)
T 1im4_A 6 HIVIFVDFDY-------------KPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEIL 72 (107)
T ss_dssp CCEEEEEETT-------------HHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCC-------------HHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCHHCCCCCHHHHHHHHHHHHH
T ss_conf 7999990680-------------688999999999999708982997154446998256320147899999999998777
Q ss_pred HCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 31540679956899999999877998998999999999999999709
Q gi|254781079|r 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 (266)
Q Consensus 205 ~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~g 251 (266)
+. ..+++|+|++.. . -.|..|...+|-+|
T Consensus 73 ~~---------tglt~SvGIa~N-------k--lLAKiAs~~aKPnG 101 (107)
T 1im4_A 73 EK---------EKITVTVGVAPN-------K--ILAKIIADKSKPNG 101 (107)
T ss_dssp HH---------HCCCEEEEEESS-------H--HHHHHHHHHTCSSC
T ss_pred HH---------CCCCEEECCCCC-------H--HHHHHHHHHHHHCC
T ss_conf 64---------487668632684-------8--99999998623288
No 25
>>1jih_A DNA polymerase ETA; translesion, yeast, translation; HET: DNA; 2.25A {Saccharomyces cerevisiae} (A:16-32,A:129-172,A:213-288)
Probab=58.18 E-value=1.5 Score=23.22 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=44.6
Q ss_pred CHHHCCCCCCCCCC-HHHCCCCCCEEEEECCCC--------------------------------CHHHHHHHHHHHHHH
Q ss_conf 00000001111100-000013343036501686--------------------------------101234445899999
Q gi|254781079|r 156 AFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGS--------------------------------SEQEAAILANDLRKI 202 (266)
Q Consensus 156 ~~va~~l~~~~~~~-~~~~R~~gdeF~ill~~~--------------------------------~~~~~~~~~~~l~~~ 202 (266)
+.+++.+.+.+++. ..+-++|-||..+=+.+. ....+..++++|++.
T Consensus 21 ~~~S~~i~~il~~~~~~ve~~SiDE~flDvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~iR~~ 100 (137)
T 1jih_A 21 RRESRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKGIRDS 100 (137)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEETTEEEEECHHHHHHHHHHCGGCCCCSEECCTTCCCSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999985987035357768997532111003433122334443333334333320333210699999999999
Q ss_pred HHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 8631540679956899999999877998998999999999999999709
Q gi|254781079|r 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 (266)
Q Consensus 203 l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~g 251 (266)
+.+. ..+|+|+||+.. .++ |..|...+|-+|
T Consensus 101 I~~~---------tglt~SvGIa~N-------klL--AKlAs~~~KPnG 131 (137)
T 1jih_A 101 IKDI---------LGYTTSCGLSST-------KNV--CKLASNYKKPDA 131 (137)
T ss_dssp HHHH---------HCCCCEEEEESS-------HHH--HHHHHTTTCSSC
T ss_pred HHHH---------HCCCEEEEEECC-------HHH--HHHHHHHCCCCC
T ss_conf 9886---------598768987066-------999--998887559998
No 26
>>3gv5_B DNA polymerase IOTA; Y-family polymerase, polymerase IOTA, error prone replication, DNA damage, DNA repair; HET: DNA MSE ADI; 2.00A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3h4d_A* 3h4b_A* 2alz_A* 3h40_A* 1t3n_A* 1zet_A* (B:1-37,B:98-238)
Probab=55.49 E-value=4.8 Score=19.33 Aligned_cols=77 Identities=21% Similarity=0.160 Sum_probs=44.7
Q ss_pred CHHHCCCCCCCCC-CHHHCCCCCCEEEEECC---------------------------------C---CCHHHHHHHHHH
Q ss_conf 0000000111110-00000133430365016---------------------------------8---610123444589
Q gi|254781079|r 156 AFLSDQLVVVFGT-PMFVGRLGGEEFAAAAL---------------------------------G---SSEQEAAILAND 198 (266)
Q Consensus 156 ~~va~~l~~~~~~-~~~~~R~~gdeF~ill~---------------------------------~---~~~~~~~~~~~~ 198 (266)
+.+++.+...+++ ...+-++|-||..+=+. + .....+..++++
T Consensus 43 r~~S~~i~~il~~~~~~VE~~SiDEaflDlT~~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~a~~ia~~ 122 (178)
T 3gv5_B 43 REXSYKVTELLEEFSPVVERLGFDENFVDLTEXVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAE 122 (178)
T ss_dssp HHHHHHHHHHHTTTCSCEEEETTTEEEEECHHHHHHHHHHCCSTTSTTCCCCSEEGGGCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCEECCCCEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHH
T ss_conf 99999999999986977010168516997665433321112420111012333223532122200354411439999999
Q ss_pred HHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9999863154067995689999999987799899899999999999999970
Q gi|254781079|r 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 (266)
Q Consensus 199 l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~ 250 (266)
|++.+.+. ..+|+|+||+.. .++ |..|...+|-+
T Consensus 123 iR~~I~~e---------tGlt~SvGIA~N-------KlL--AKLAs~~~KPn 156 (178)
T 3gv5_B 123 XREAXYNQ---------LGLTGCAGVASN-------KLL--AKLVSGVFKPN 156 (178)
T ss_dssp HHHHHHHH---------HCCCEEEEEESS-------HHH--HHHHHTSSCSS
T ss_pred HHHHHHHH---------HCCCEEEEECCC-------HHH--HHHHHHHHHHC
T ss_conf 99999998---------399658854463-------776--78888753103
No 27
>>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis CDC1551} PDB: 1ybu_A* (A:)
Probab=53.53 E-value=5.7 Score=18.71 Aligned_cols=115 Identities=16% Similarity=0.075 Sum_probs=66.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC-CCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 897257554422100011468865444311000000011111-0000001334303650168610123444589999986
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~-~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~ 204 (266)
....++++.||-+|..+-+.++.+.--++|...-+.+...+. .+..+-.+-||.|..+++..... ...+........
T Consensus 15 ~~~vtilf~Di~g~T~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~g~v~k~~GD~~la~f~~~~~~--~~~~~~~~~~~~ 92 (184)
T 1ybt_A 15 RXLATIXFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSPSAA--IACADDIVDAVA 92 (184)
T ss_dssp EEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESCHHHH--HHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEECCCCC--CHHHHHHHHHHH
T ss_conf 889999999842738998769999999999999999999876312144320353156775024433--004677766541
Q ss_pred HCCCCCCCCCEEEEEEEEEEEEC----CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 31540679956899999999877----998998999999999999999
Q gi|254781079|r 205 NSQINISSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAK 248 (266)
Q Consensus 205 ~~~~~~~~~~~~~~t~s~Gia~~----~~~~~~~~ll~~Ad~Al~~AK 248 (266)
..+ ..+.+.+.+|.+.. .+.+-..+-+..|..-...|+
T Consensus 93 ~~~------~~~~~g~~~G~~~~~~i~~~~~~~G~~Vn~AaRl~~~a~ 134 (184)
T 1ybt_A 93 ALG------IEVRIGIHAGEVEVRDASHGTDVAGVAVHIGARVCALAG 134 (184)
T ss_dssp TTT------CCEEEEEEEEEEEEEECSSCEEEESHHHHHHHHHHHHSC
T ss_pred CCC------CCCCCCCCCCEEEEECCCCCCCCCCCEEEHHHHHHHCCC
T ss_conf 112------232336521039970267787644870558789870478
No 28
>>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} (A:195-331)
Probab=50.39 E-value=10 Score=16.72 Aligned_cols=104 Identities=21% Similarity=0.168 Sum_probs=52.1
Q ss_pred HCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCH
Q ss_conf 05020489998887708972575544221000114688654443110000000111110000001334303650168610
Q gi|254781079|r 110 SGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 (266)
Q Consensus 110 TgL~NR~~f~~~l~~~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~ 189 (266)
.|+++.......-+..+...+++.+++++ .+.+.++-..++--.....+||.+=.+..|....
T Consensus 32 Pgl~~~~~~~~~~~~~~~~G~~~sf~l~~-----------------~~~a~~f~~~l~l~~~~~slG~~~TL~~~~~~~~ 94 (137)
T 1pff_A 32 PGLPDHPGHEIAKKQMKMFGSMIAFDVDG-----------------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMT 94 (137)
T ss_dssp TTSTTSTTHHHHHHHCSSCCSEEEEECSS-----------------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHT
T ss_pred CCCCCCHHHHHHHHHCCCCCCEEEEEECC-----------------HHHHHHHHHHCCCCEEECCCCCCCCEEECCCCCC
T ss_conf 88778507899874136876047898488-----------------9999999983782245136787751465763015
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 123444589999986315406799568999999998779989989999999999999
Q gi|254781079|r 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 (266)
Q Consensus 190 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~ 246 (266)
..... +. ..... .....-++ +|+|+ +++++|+..-++|+..
T Consensus 95 h~~~~--~~---~~~~~---Gi~~~liR--lSvGl------Ed~edLi~dl~~AL~~ 135 (137)
T 1pff_A 95 HAGVP--KE---EREAA---GLTDNLIR--LSVGC------ENVQDIIDDLKQALDL 135 (137)
T ss_dssp STTSC--HH---HHHHT---TCCTTEEE--EECCS------SCHHHHHHHHHHHHHT
T ss_pred CCCCC--HH---HHHHC---CCCCCEEE--EEEEE------CCHHHHHHHHHHHHHH
T ss_conf 32299--99---99966---98929699--99701------8999999999999997
No 29
>>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} (A:1-771)
Probab=46.39 E-value=4.8 Score=19.27 Aligned_cols=86 Identities=5% Similarity=-0.193 Sum_probs=59.7
Q ss_pred HHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCH
Q ss_conf 999999610401050204899988877-------0897257554422100011468865444311000000011111000
Q gi|254781079|r 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 (266)
Q Consensus 98 ~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~ 170 (266)
.........+.++....+..+...... ......++..+.+.++.+++..|+..++..+..+...+....+..+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (771)
T 3bjc_A 324 ETSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTR 403 (771)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHCCCCCC
T ss_conf 56766666667888888876531000368999999999998485301799984688726888750554310120255556
Q ss_pred HHCCCCCCEEEEE
Q ss_conf 0001334303650
Q gi|254781079|r 171 FVGRLGGEEFAAA 183 (266)
Q Consensus 171 ~~~R~~gdeF~il 183 (266)
..++.....+...
T Consensus 404 ~~~~~~~~~~~~~ 416 (771)
T 3bjc_A 404 EHDANKINYMYAQ 416 (771)
T ss_dssp -------------
T ss_pred CCCCCCCCCCHHH
T ss_conf 5555654531789
No 30
>>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genomics, SGC stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B (A:262-403)
Probab=39.99 E-value=20 Score=14.62 Aligned_cols=108 Identities=20% Similarity=0.166 Sum_probs=57.7
Q ss_pred HCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCH
Q ss_conf 05020489998887708972575544221000114688654443110000000111110000001334303650168610
Q gi|254781079|r 110 SGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 (266)
Q Consensus 110 TgL~NR~~f~~~l~~~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~ 189 (266)
.|+++...+....+......+++.+++++ + ...+..+-..++--....-+||.+=.++.|....
T Consensus 32 P~l~~~~~~~l~~~~~~g~~g~lsf~~~~--------~--------~~~~~~f~~~l~l~~~~~S~G~~~SL~~~~~~~~ 95 (142)
T 3cog_A 32 PGLPSHPQHELVKRQCTGCTGMVTFYIKG--------T--------LQHAEIFLKNLKLFTLAESLGGFESLAELPAIMT 95 (142)
T ss_dssp TTSTTSTTHHHHHHHCSCCCSEEEEEESS--------C--------HHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTT
T ss_pred CCCCCCCHHHHHHHHCCCCCEEEEEEECC--------C--------HHHHHHHHHCCCCCEECCCCCCCCCEECCCCCCC
T ss_conf 89888821999996189987067989769--------8--------9999999973893555467777562400765224
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 123444589999986315406799568999999998779989989999999999999997
Q gi|254781079|r 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 (266)
Q Consensus 190 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~ 249 (266)
... +-..-+... ..+...++ +|+|+ +++++|+..-+.||..++.
T Consensus 96 ~~~--~~~~~~~~~------Gi~~~liR--lSvGl------E~~edLi~Dl~~Al~~~~~ 139 (142)
T 3cog_A 96 HAS--VLKNDRDVL------GISDTLIR--LSVGL------EDEEDLLEDLDQALKAAHP 139 (142)
T ss_dssp TTT--SCHHHHHHH------TCCTTEEE--EECCS------SCHHHHHHHHHHHHHHHCC
T ss_pred CCC--CCHHHHHHC------CCCCCEEE--EEECC------CCHHHHHHHHHHHHHHCCC
T ss_conf 322--899999975------98949599--99585------9999999999999983667
No 31
>>3du6_A Telomerase reverse transcriptase; RNA-directed DNA polymerase, transferase; 2.71A {Tribolium castaneum} PDB: 3du5_A (A:204-256,A:309-417)
Probab=39.73 E-value=18 Score=14.87 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCC----CCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 89725755442210001146886544----43110000000111110000001334303650168610123444589999
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVG----DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~g----D~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~ 201 (266)
+.+..-+-+| |.|.||.... +-+|..+-+.+.+....+....|+..| |+++.+ +.+++..+.+.+..
T Consensus 39 ~~~~~~~~~~------~~~~~Gs~LSplLANIyL~~lD~~l~~~~~~~~~yiRYaDD-~lIi~~--ske~a~~il~~i~~ 109 (162)
T 3du6_A 39 QGQIYGIKVD------IRDAYGDPLSGCLCELYMAFMDRLYFSNLDKDAFIHRTVDD-YFFCSP--HPHKVYDFELLIKG 109 (162)
T ss_dssp CSCCEEEEEE------BSCTTTSTTHHHHHHHHHHHHHHHHCCSSCTTSEEEECSSE-EEEEES--STHHHHHHHHHHHH
T ss_pred CCCEEEEEEC------HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-EEEEEC--CHHHHHHHHHHHHC
T ss_conf 4742899833------44475763229999999999999987432578548997166-799718--99999999999846
Q ss_pred HHH
Q ss_conf 986
Q gi|254781079|r 202 IIE 204 (266)
Q Consensus 202 ~l~ 204 (266)
.++
T Consensus 110 gL~ 112 (162)
T 3du6_A 110 VYQ 112 (162)
T ss_dssp HSC
T ss_pred CCC
T ss_conf 654
No 32
>>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* (C:39-119)
Probab=37.31 E-value=16 Score=15.26 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=21.8
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 00013343036501686101234445899999863
Q gi|254781079|r 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 (266)
Q Consensus 171 ~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~ 205 (266)
-+..+|.|||.++.|..+. +..++...+..
T Consensus 42 ~v~WlgPDEwLi~~~~~~~-----l~a~L~~al~~ 71 (81)
T 2gag_C 42 AVLWLAPDEFLATSAENTE-----LGGVLSAALGD 71 (81)
T ss_dssp EEEEEETTEEEEEESSCTT-----HHHHHHHHHTT
T ss_pred EEEEECCCEEEEEECCCCH-----HHHHHHHHCCC
T ss_conf 9999578607998056404-----99999984554
No 33
>>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} (A:32-43,A:104-270)
Probab=36.60 E-value=22 Score=14.24 Aligned_cols=44 Identities=32% Similarity=0.336 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 12344458999998631540679956899999999877998998999999999999999709
Q gi|254781079|r 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 (266)
Q Consensus 190 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~g 251 (266)
..+..++++|++.+.+. ..+|+|+||+.. .+ .|..|...+|-+|
T Consensus 130 ~~~~~ia~~IR~~I~~~---------~Glt~S~GIa~N-------k~--LAKlAs~~~KPng 173 (179)
T 1t94_A 130 TSAQEVVKEIRFRIEQK---------TTLTASAGIAPN-------TM--LAKVCSDKNKPNG 173 (179)
T ss_dssp SSHHHHHHHHHHHHHHH---------HSCCEEEEEESS-------HH--HHHHHHHHTTTTC
T ss_pred CCHHHHHHHHHHHHHHH---------HCCCEEEEECCC-------HH--HHHHHHHHCCCCC
T ss_conf 67999999999999998---------699657651530-------88--8998898459888
No 34
>>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* (C:37-117)
Probab=36.32 E-value=17 Score=15.13 Aligned_cols=30 Identities=30% Similarity=0.322 Sum_probs=21.5
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 00013343036501686101234445899999863
Q gi|254781079|r 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 (266)
Q Consensus 171 ~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~ 205 (266)
-+..+|.|||.++.|..+. +..++...+..
T Consensus 42 ~vlWlgPDEwLi~~~~~~~-----l~a~L~~al~~ 71 (81)
T 1x31_C 42 AVLWLGPDEFLLAAEENPA-----LLDTLQGALGQ 71 (81)
T ss_dssp EEEEEETTEEEEEESSCTH-----HHHHHHHHHTT
T ss_pred EEEEECCCEEEEEECCHHH-----HHHHHHHHCCC
T ss_conf 9999779848998362345-----89999974334
No 35
>>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase, propargylglycine; HET: PPJ; 2.18A {Trichomonas vaginalis} (A:259-404)
Probab=34.73 E-value=24 Score=14.03 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=40.0
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 00013343036501686101234445899999863154067995689999999987799899899999999999999970
Q gi|254781079|r 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 (266)
Q Consensus 171 ~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~ 250 (266)
...-+||-|=.+..|....... +-+.-++.. ..+..-++ +|+|+ +++++|+..-++||..+++-
T Consensus 77 ~~~slGg~~SLi~~~~~~~~~~--~~~~~~~~~------Gi~~~lvR--lsvGl------Ed~edLi~Dl~~Al~~~~~~ 140 (146)
T 1e5e_A 77 LAVSLGGCESLIQHPASMTHAV--VPKEEREAA------GITDGMIR--LSVGI------EDADELIADFKQGLDALLRS 140 (146)
T ss_dssp ESSCCCSSSCEEECGGGTTTTT--SCHHHHHHT------TCCTTEEE--EECCS------SCHHHHHHHHHHHHHHHHCC
T ss_pred EEECCCCCCEEEECCCCCCCCC--CCHHHHHHC------CCCCCEEE--EEECC------CCHHHHHHHHHHHHHHHHHH
T ss_conf 8556777750444862005533--899999976------98939499--99256------99999999999999999864
Q ss_pred CCC
Q ss_conf 996
Q gi|254781079|r 251 GRN 253 (266)
Q Consensus 251 gkn 253 (266)
+++
T Consensus 141 ~~~ 143 (146)
T 1e5e_A 141 HHH 143 (146)
T ss_dssp ---
T ss_pred CCC
T ss_conf 022
No 36
>>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:)
Probab=33.87 E-value=10 Score=16.87 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88654443110000000111110000001334303650168610123444589999986
Q gi|254781079|r 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 (266)
Q Consensus 146 ~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~ 204 (266)
.+.+...+.|+.+++.+ .+.-.+--++|++++.|-...+.+++ .++|.+.++
T Consensus 490 ~~~~e~~~~l~~l~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 541 (546)
T 2wvr_C 490 MSPGEMEKHLLLLSELL----PDWLSLHRIRTDTYVKLDKAADLAHI---TARLAHQTR 541 (546)
T ss_dssp -----------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHC----CCCEEEEEECCCEEEEEECCCCHHHH---HHHHHHHHH
T ss_conf 99999999999999868----72069986279458996021799999---999999976
No 37
>>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} (A:)
Probab=29.13 E-value=29 Score=13.38 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=42.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC-CCHHHCCCCCCEEEEECCCC
Q ss_conf 897257554422100011468865444311000000011111-00000013343036501686
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGS 187 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~-~~~~~~R~~gdeF~ill~~~ 187 (266)
....++++.||.+|..+-+.++.+.. .+|..+-+.+...+. .+..+.++-||.+.++++..
T Consensus 10 ~~~vtvlf~DI~gft~l~e~~p~~~~-~~l~~~~~~~~~~i~~~gG~~~~~~GD~~~~~~~~~ 71 (235)
T 1fx2_A 10 TDPVTLIFTDIESSTALWAAHPDLMP-DAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSP 71 (235)
T ss_dssp TSCEEEEEEEETTHHHHHHHCTTTHH-HHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCH
T ss_pred CCCEEEEEEECCCHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCC
T ss_conf 88599999965887999986999999-999999999999999839989997588048960898
No 38
>>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} (A:)
Probab=26.85 E-value=22 Score=14.31 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=26.7
Q ss_pred HHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 000000111110000001334303650168610123444589999986
Q gi|254781079|r 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 (266)
Q Consensus 157 ~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~ 204 (266)
.+|..|...--++.+++=++||+=+++++ .+.+++..+.++++..++
T Consensus 29 ~va~~iD~~~~~e~I~GTIAGdDTilii~-~s~~~a~~l~~~l~~~~~ 75 (78)
T 1xxa_A 29 LIARLLDSLGKAEGILGTIAGDDTIFTTP-ANGFTVKDLYEAILELFD 75 (78)
T ss_dssp HHHHHHTTTTTTTTEEEEEECSSEEEEEE-CTTCCHHHHHHHHHTTC-
T ss_pred HHHHHHHCCCCCCCEEEEECCCCEEEEEE-CCHHHHHHHHHHHHHHHH
T ss_conf 99999972799886899972699999997-887999999999999986
No 39
>>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} (A:1-67,A:350-476)
Probab=23.51 E-value=8.5 Score=17.42 Aligned_cols=49 Identities=10% Similarity=-0.048 Sum_probs=24.5
Q ss_pred HHHCCCCCCCCCCHHHCCCCCCEEEEECCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 000000111110000001334303650168-6101234445899999863
Q gi|254781079|r 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205 (266)
Q Consensus 157 ~va~~l~~~~~~~~~~~R~~gdeF~ill~~-~~~~~~~~~~~~l~~~l~~ 205 (266)
.++..+...+.+..++.|.+|+-+-+.-|- .+++++....+.+.+.+.+
T Consensus 122 ~~~~~i~~~~~~~Gll~~~~g~~irl~PPL~it~~ei~~~~~~l~~al~~ 171 (194)
T 3i5t_A 122 AFTLKIDERCFELGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITE 171 (194)
T ss_dssp HHHHHHHHHHHHTTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999789289754988999899578999999999999999999
No 40
>>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Chromobacterium violaceum atcc 12472} (A:)
Probab=23.46 E-value=36 Score=12.65 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=41.3
Q ss_pred CCCCHHHCCCCCCCCCCHHHCCC----CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC--CCCCC--CEEEEEEEEE
Q ss_conf 31100000001111100000013----343036501686101234445899999863154--06799--5689999999
Q gi|254781079|r 153 KVIAFLSDQLVVVFGTPMFVGRL----GGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSG--PSIHITISAG 223 (266)
Q Consensus 153 ~~L~~va~~l~~~~~~~~~~~R~----~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~--~~~~~t~s~G 223 (266)
+++..+++.|..--..+-.+.-+ +-.+|.|+..+.+...+..+++.+...+.+... ...+| ..-++-+-+|
T Consensus 5 ~l~~~i~~~l~~~ka~DI~vidv~~~~~~~dy~VI~T~~S~rh~~aia~~i~~~~k~~~~~~~~~eG~~~~~W~liD~g 83 (130)
T 2id1_A 5 EISKLAIEALEDIKGKDIIELDTSKLTSLFQRXIVATGDSNRQVKALANSVQVKLKEAGVDIVGSEGHESGEWVLVDAG 83 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCCBCCSTTTSSEEEEEET
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
T ss_conf 9999999999973888639997889862431679977546799999999999999983996510368878998999658
No 41
>>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} (A:50-139)
Probab=23.18 E-value=36 Score=12.63 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=16.7
Q ss_pred CCHHHCCCCCCEEEEECCCCCHH
Q ss_conf 00000013343036501686101
Q gi|254781079|r 168 TPMFVGRLGGEEFAAAALGSSEQ 190 (266)
Q Consensus 168 ~~~~~~R~~gdeF~ill~~~~~~ 190 (266)
.+-+++|++.|+|.++.+....+
T Consensus 46 ~d~~v~~~~ed~~~l~~~~~~~~ 68 (90)
T 1wos_A 46 DDLVVYKVSPDEALMVVNAANIE 68 (90)
T ss_dssp EEEEEEEEETTEEEEEECGGGHH
T ss_pred EEECCCCCCCCCCCCCCCCCCHH
T ss_conf 84001111101100234544234
No 42
>>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E (X:1-114,X:188-320)
Probab=21.15 E-value=33 Score=12.96 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 9989999999999999
Q gi|254781079|r 231 EPISTIIYRADQALYV 246 (266)
Q Consensus 231 ~~~~~ll~~Ad~Al~~ 246 (266)
.++..+++-.|.+|..
T Consensus 162 ~~~~n~~d~~~~~~~~ 177 (247)
T 1ys1_X 162 VDPANALDPSTLALFG 177 (247)
T ss_dssp TCTHHHHCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHH
T ss_conf 4544555730366651
No 43
>>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} (A:247-386)
Probab=21.03 E-value=40 Score=12.31 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=56.6
Q ss_pred HHHHHCCCHH-----CCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCC
Q ss_conf 9996104010-----50204899988877089725755442210001146886544431100000001111100000013
Q gi|254781079|r 101 SQLSRIDCLS-----GLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 (266)
Q Consensus 101 ~~~a~~D~LT-----gL~NR~~f~~~l~~~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~ 175 (266)
+.+..++.+- |+++.-...-.-+......+++.+++.+ + ...+..+-+.++--....-+
T Consensus 18 ~~L~~~~~v~~V~yPgl~~~p~~~~~~k~~~ggg~~~~f~~~~--------~--------~~~~~~F~~~l~l~~~~~Sl 81 (140)
T 1cs1_A 18 KYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG--------D--------EQTLRRFLGGLSLFTLAESL 81 (140)
T ss_dssp HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--------C--------HHHHHHHHHTCSSSEEBSCC
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHCCC--------H--------HHHHHHHHHHCCCCEECCCC
T ss_conf 9643588666631012220258999876158986400300134--------6--------99999999828826455156
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 34303650168610123444589999986315406799568999999998779989989999999999999997
Q gi|254781079|r 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 (266)
Q Consensus 176 ~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~ 249 (266)
||-+=.+..|...... .+-+.-+... ..+...++ +|+|+ +++++|+..-++||..+++
T Consensus 82 Gg~~SL~~~~~~~~~~--~~~~~~~~~~------Gi~~~lvR--lSvGl------E~~edLi~Dl~~AL~~~~~ 139 (140)
T 1cs1_A 82 GGVESLISHAATMTHA--GMAPEARAAA------GISETLLR--ISTGI------EDGEDLIADLENGFRAANK 139 (140)
T ss_dssp CSSSCEEEEGGGTTTT--TSCHHHHHHH------TCCTTEEE--EECCS------SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEECCCCCCCC--CCCHHHHHHC------CCCCCEEE--EEECC------CCHHHHHHHHHHHHHHHCC
T ss_conf 8753033066100531--1799999866------98929699--97652------9999999999999998617
No 44
>>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} (A:)
Probab=20.32 E-value=40 Score=12.29 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=33.1
Q ss_pred CCCCCCCCC--CCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 468865444--31100000001111100000013343036501686101234445899999
Q gi|254781079|r 144 DNFGHPVGD--KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 (266)
Q Consensus 144 d~~G~~~gD--~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~ 202 (266)
|.||-..-+ +++.++.+.+++.+++.-+..|++++++.-- +.+.++...++..+...
T Consensus 201 DeYGGs~enR~Rf~~Eii~air~a~gd~~v~~R~~~~~~~~~--g~~~~e~~~~a~~l~~~ 259 (361)
T 3gka_A 201 DAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHT--MGDSDPAATFGHVAREL 259 (361)
T ss_dssp STTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSS--CCCSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCHHHHHHHHHHHH
T ss_conf 557875655346778888877763366634554034655234--56566299999999985
No 45
>>1rhc_A F420-dependent alcohol dehydrogenase; (alpha, beta)8 barrel, oxidoreductase; HET: F42; 1.80A {Methanoculleus thermophilus} (A:)
Probab=20.30 E-value=41 Score=12.20 Aligned_cols=29 Identities=7% Similarity=0.064 Sum_probs=16.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 34303650168610123444589999986
Q gi|254781079|r 176 GGEEFAAAALGSSEQEAAILANDLRKIIE 204 (266)
Q Consensus 176 ~gdeF~ill~~~~~~~~~~~~~~l~~~l~ 204 (266)
|.|+|++..+..+.++.+.+++.+...++
T Consensus 301 G~d~~~l~~~~~~~~~~~~~~~~v~P~lr 329 (330)
T 1rhc_A 301 GINHFCLGNSSPDVNFGIDIFKEVIPAVR 329 (330)
T ss_dssp TCCEEEEEECCSSHHHHHHTHHHHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 99879997999899999999998888624
Done!