HHsearch results for GI: 254781079 and protein with PDBid: 3icl_A
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=99.92 E-value=1.6e-25 Score=212.54 Aligned_cols=153 Identities=29% Similarity=0.485 Sum_probs=135.2
Q ss_pred CCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCC
Q ss_conf 0401050204899988877-------089725755442210001146886544431100000001111100000013343
Q gi|254781079|r 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 (266)
Q Consensus 106 ~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gd 178 (266)
.|||||||||++|.+++++ .+.++++++|+||+|+.+|+.+|++.||++|+.++++|+..+++++.+||+++|
T Consensus 1 iD~lTGL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~i~~~~~i~~~~G~~~~d~~l~~va~~l~~~~~~~~~v~r~~~~ 80 (171)
T 3icl_A 1 MDTVTGLPNRQLFCDRLLQALAAHERDGNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRDGDTVARIGGD 80 (171)
T ss_dssp CCTTTCCCCHHHHHHHHHHHHHHCCCTTSCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHSCTTCEEEEETTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 90212733489999999999999875399499999984188898886082677789999999999877998699997588
Q ss_pred EEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 036501686-10123444589999986315406799568999999998779-9899899999999999999970996899
Q gi|254781079|r 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 (266)
Q Consensus 179 eF~ill~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gkn~~~ 256 (266)
+|++++|+. +..+.....+++...+... ...++....+++|+|++.++ ++.++++++.+|+.||++||++|+|+++
T Consensus 81 ~F~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~Gia~~~~~~~~~~~ll~~A~~AL~~Ak~~g~n~~~ 158 (171)
T 3icl_A 81 KFTILLNGAKDTLNGALVAQKILDGLAQP--FVFGAQQIVISVSIGIAVSPADGETMEQLLRNADTAMYHAKSRGKNNYQ 158 (171)
T ss_dssp EEEEEESSCTTSTTTHHHHHHHHHHHTSC--EEETTEEECCCEEEEEEETTTTCSSHHHHHHHHHHHHHHHHHHCSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCH--HHCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 58886699984999999999999998360--0104656448889998527899999999999999999999984999899
Q ss_pred ECCH
Q ss_conf 9402
Q gi|254781079|r 257 CFSD 260 (266)
Q Consensus 257 ~~~~ 260 (266)
+|++
T Consensus 159 ~y~~ 162 (171)
T 3icl_A 159 FFSP 162 (171)
T ss_dssp ECCC
T ss_pred EECH
T ss_conf 9887