HHsearch results for GI: 254781079 and protein with PDBid: 3ign_A

>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=99.95  E-value=2.2e-28  Score=234.26  Aligned_cols=163  Identities=36%  Similarity=0.554  Sum_probs=148.1

Q ss_pred             HHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCH
Q ss_conf             999999610401050204899988877-------0897257554422100011468865444311000000011111000
Q gi|254781079|r   98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM  170 (266)
Q Consensus        98 ~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~  170 (266)
                      +++++++++||+||||||++|.++++.       .+.++++++++||+|+.+|+.||++.||++|+.+++++...+++++
T Consensus         2 e~l~~la~~D~lTgL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~id~~~~i~~~~G~~~~d~ll~~va~~l~~~~~~~~   81 (177)
T 3ign_A            2 EQLAKLSMTDRLTGLLNRGTWENLVDAEYERFRRYGQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIRQSD   81 (177)
T ss_dssp             ---CTTSSBCTTTCSEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             68998758561338525899999999999998850996899999888755101254874303677754331100113577


Q ss_pred             HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0001334303650168610123444589999986315406799568999999998779-989989999999999999997
Q gi|254781079|r  171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK  249 (266)
Q Consensus       171 ~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~  249 (266)
                      .++|+++|+|++++|+.+.+++..+.+++...+.+..+.. ++..+.+++|+|++.++ +++++++++++||.||++||+
T Consensus        82 ~~~r~~~d~f~il~~~~~~~~~~~~~~rl~~~i~~~~~~~-~~~~~~~~~siGia~~~~~~~~~~~ll~~A~~AL~~AK~  160 (177)
T 3ign_A           82 SAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVST-SAGDIQYTVSMGIAQLTETPENYMQWMQKADEALYKAKE  160 (177)
T ss_dssp             EEEECSSSEEEEEEETCCHHHHHHHHHHHHHHHHTCCEEC-SSCEECCCEEEEEEECCSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             2146349889997089997999999999999998264444-688740578899996479998899999999999999998


Q ss_pred             CCCCEEEECCHH
Q ss_conf             099689994021
Q gi|254781079|r  250 SGRNRVVCFSDI  261 (266)
Q Consensus       250 ~gkn~~~~~~~~  261 (266)
                      .|||+||++-|-
T Consensus       161 ~G~N~v~~~~~~  172 (177)
T 3ign_A          161 SGRNKVVVSLEH  172 (177)
T ss_dssp             TTSSSEEECC--
T ss_pred             HCCCEEEEEEEC
T ss_conf             299979999841