HHsearch results for GI: 254781079 and protein with PDBid: 3ign_A
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=99.95 E-value=2.2e-28 Score=234.26 Aligned_cols=163 Identities=36% Similarity=0.554 Sum_probs=148.1
Q ss_pred HHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCH
Q ss_conf 999999610401050204899988877-------0897257554422100011468865444311000000011111000
Q gi|254781079|r 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 (266)
Q Consensus 98 ~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~ 170 (266)
+++++++++||+||||||++|.++++. .+.++++++++||+|+.+|+.||++.||++|+.+++++...+++++
T Consensus 2 e~l~~la~~D~lTgL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~id~~~~i~~~~G~~~~d~ll~~va~~l~~~~~~~~ 81 (177)
T 3ign_A 2 EQLAKLSMTDRLTGLLNRGTWENLVDAEYERFRRYGQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIRQSD 81 (177)
T ss_dssp ---CTTSSBCTTTCSEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 68998758561338525899999999999998850996899999888755101254874303677754331100113577
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0001334303650168610123444589999986315406799568999999998779-989989999999999999997
Q gi|254781079|r 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249 (266)
Q Consensus 171 ~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~ 249 (266)
.++|+++|+|++++|+.+.+++..+.+++...+.+..+.. ++..+.+++|+|++.++ +++++++++++||.||++||+
T Consensus 82 ~~~r~~~d~f~il~~~~~~~~~~~~~~rl~~~i~~~~~~~-~~~~~~~~~siGia~~~~~~~~~~~ll~~A~~AL~~AK~ 160 (177)
T 3ign_A 82 SAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVST-SAGDIQYTVSMGIAQLTETPENYMQWMQKADEALYKAKE 160 (177)
T ss_dssp EEEECSSSEEEEEEETCCHHHHHHHHHHHHHHHHTCCEEC-SSCEECCCEEEEEEECCSCCSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2146349889997089997999999999999998264444-688740578899996479998899999999999999998
Q ss_pred CCCCEEEECCHH
Q ss_conf 099689994021
Q gi|254781079|r 250 SGRNRVVCFSDI 261 (266)
Q Consensus 250 ~gkn~~~~~~~~ 261 (266)
.|||+||++-|-
T Consensus 161 ~G~N~v~~~~~~ 172 (177)
T 3ign_A 161 SGRNKVVVSLEH 172 (177)
T ss_dssp TTSSSEEECC--
T ss_pred HCCCEEEEEEEC
T ss_conf 299979999841