Query gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 266
No_of_seqs 128 out of 12768
Neff 8.5
Searched_HMMs 23785
Date Wed Jun 1 00:34:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781079.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w25_A Stalked-cell differenti 100.0 1.2E-39 5E-44 320.2 9.0 166 95-260 279-453 (459)
2 3ezu_A Ggdef domain protein; m 100.0 5E-32 2.1E-36 262.1 14.2 163 90-257 168-341 (342)
3 3bre_A Probable two-component 100.0 2.1E-31 8.7E-36 257.4 15.9 173 89-261 156-340 (358)
4 3mtk_A Diguanylate cyclase/pho 100.0 1E-28 4.3E-33 236.8 8.0 161 98-263 1-168 (178)
5 3i5c_A Fusion of general contr 100.0 7.3E-28 3.1E-32 230.3 11.5 174 90-263 16-201 (206)
6 3ign_A Diguanylate cyclase; gg 99.9 2.2E-28 9.3E-33 234.3 8.3 163 98-261 2-172 (177)
7 3hva_A Protein FIMX; ggdef dig 99.9 3E-28 1.3E-32 233.2 7.2 165 95-260 4-176 (177)
8 3icl_A EAL/ggdef domain protei 99.9 1.6E-25 6.5E-30 212.5 9.0 153 106-260 1-162 (171)
9 3hvb_A Protein FIMX; EAL phosp 99.9 9.5E-25 4E-29 206.5 0.0 167 95-262 4-178 (437)
10 3hvw_A Diguanylate-cyclase (DG 99.8 1.1E-21 4.8E-26 183.1 2.6 155 105-263 1-163 (176)
11 2qv6_A MJ0145, GTP cyclohydrol 96.3 0.011 4.7E-07 38.2 6.6 117 128-260 131-250 (268)
12 1yk9_A Adenylate cyclase; beta 94.1 0.26 1.1E-05 27.8 8.0 99 127-225 9-113 (204)
13 3et6_A Soluble guanylyl cyclas 93.8 0.074 3.1E-06 31.9 4.7 122 127-248 8-143 (190)
14 1y10_A Hypothetical protein RV 93.5 0.1 4.4E-06 30.8 5.1 121 128-257 215-335 (407)
15 1ybt_A Hydrolase, alpha/beta h 92.5 0.044 1.8E-06 33.7 1.9 120 127-257 16-140 (184)
16 1azs_A VC1; complex (lyase/hyd 91.6 0.1 4.3E-06 30.9 2.9 128 127-257 33-173 (220)
17 3mr7_A Adenylate/guanylate cyc 91.1 0.37 1.5E-05 26.7 5.4 126 127-257 6-134 (189)
18 2wz1_A Guanylate cyclase solub 83.9 1.4 5.9E-05 22.2 4.7 121 127-248 11-151 (219)
19 1wc3_A Adenylate cyclase; solu 82.8 2 8.3E-05 21.1 5.1 60 127-186 26-86 (219)
20 1ab8_A Adenylyl cyclase; lyase 82.4 2.3 9.6E-05 20.6 6.5 99 127-225 13-135 (220)
21 1fx2_A Receptor-type adenylate 81.5 1.9 8.2E-05 21.1 4.7 75 126-203 10-85 (235)
22 2w01_A Adenylate cyclase; guan 77.3 2.4 0.0001 20.4 4.0 60 127-186 13-73 (208)
23 1im4_A DBH; DNA polymerase PAL 63.8 2.4 0.0001 20.4 1.6 63 171-251 103-168 (221)
24 3bq0_A POL IV, DBH, DNA polyme 46.6 11 0.00044 15.5 2.5 20 229-248 304-323 (354)
25 3mr3_A DNA polymerase ETA; POL 43.7 5.1 0.00021 18.0 0.5 12 124-135 231-242 (435)
26 3gqc_A DNA repair protein REV1 43.1 5.8 0.00024 17.5 0.8 63 171-251 234-299 (504)
27 1t94_A Polymerase (DNA directe 39.4 9 0.00038 16.1 1.3 20 230-249 411-430 (459)
28 1xxa_A ARGR, arginine represso 34.5 9.5 0.0004 15.9 0.7 48 156-204 28-75 (78)
29 3byp_A CZRB protein; membrane 34.3 17 0.0007 14.0 2.1 61 147-207 4-74 (94)
30 1jx4_A DNA polymerase IV (fami 33.9 17 0.00072 13.9 2.8 20 229-248 304-323 (352)
31 1x31_C Sarcosine oxidase gamma 26.4 22 0.00094 13.0 2.5 60 127-188 26-95 (206)
32 2aq4_A DNA repair protein REV1 24.8 24 0.001 12.8 3.9 11 193-203 183-193 (434)
33 3osn_A DNA polymerase IOTA; ho 24.2 20 0.00082 13.5 0.9 10 194-203 323-332 (420)
34 2gag_C Heterotetrameric sarcos 22.6 26 0.0011 12.5 3.1 61 126-188 27-97 (210)
35 2ns5_A Partitioning-defective 22.4 26 0.0011 12.5 4.1 37 216-252 3-44 (85)
36 1lxn_A Hypothetical protein MT 20.4 29 0.0012 12.2 5.5 76 179-263 5-80 (99)
37 1ps9_A 2,4-dienoyl-COA reducta 20.2 24 0.001 12.8 0.7 54 143-199 180-237 (671)
No 1
>1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=100.00 E-value=1.2e-39 Score=320.21 Aligned_cols=166 Identities=30% Similarity=0.465 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 999999999610401050204899988877-------0897257554422100011468865444311000000011111
Q gi|254781079|r 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 (266)
Q Consensus 95 ~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~ 167 (266)
+..+++.++|++|||||||||++|.+++++ .+.+++|+++|||+||.|||+|||.+||++|+++|++|+.++|
T Consensus 279 ~~~~~l~~la~~D~LTgL~NR~~~~~~l~~~i~~a~r~~~~~al~~lDlD~FK~iND~~GH~~GD~vL~~va~~L~~~~r 358 (459)
T 1w25_A 279 NNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVR 358 (459)
T ss_dssp SSSSCCSTTCCBCTTTCCBCHHHHHHHHHHHHHHHHTSSCCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHCCHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99987664127686568712999999889999998742987999996043014021134826789999999999997289
Q ss_pred CCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHH
Q ss_conf 000000133430365016861012344458999998631540679-9568999999998779-98998999999999999
Q gi|254781079|r 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERC-HKEPISTIIYRADQALY 245 (266)
Q Consensus 168 ~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~ 245 (266)
++|+++|+|||||+|++|+++.+++..++++|+..+...++...+ +..+.+|+|+||+.++ +++++++|+++||.|||
T Consensus 359 ~~d~vaR~GGDEF~ill~~~~~~~a~~~a~ri~~~i~~~~f~~~~~~~~~~vt~SiGia~~~~~~~~~~~Ll~~AD~Amy 438 (459)
T 1w25_A 359 AIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVY 438 (459)
T ss_dssp TTSEEEECSSSEEEEEETTCCHHHHHHHHHHHHHHHHTSCEECGGGSCEECCCEEEEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 88689998576799997899999999999999999966893665898899999999999717999989999999999999
Q ss_pred HHHHCCCCEEEECCH
Q ss_conf 999709968999402
Q gi|254781079|r 246 VAKKSGRNRVVCFSD 260 (266)
Q Consensus 246 ~AK~~gkn~~~~~~~ 260 (266)
+||++||||||..+-
T Consensus 439 ~AK~~Grnrvv~~~~ 453 (459)
T 1w25_A 439 QAKASGRNAVVGKAA 453 (459)
T ss_dssp HHHHTTSSCEEECCC
T ss_pred HHHHHCCCEEEECCC
T ss_conf 999719995998000
No 2
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with ggdef-domain, structural genomics; 1.95A {Geobacter sulfurreducens}
Probab=99.98 E-value=5e-32 Score=262.07 Aligned_cols=163 Identities=28% Similarity=0.529 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 99999999999999610401050204899988877-------08972575544221000114688654443110000000
Q gi|254781079|r 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 (266)
Q Consensus 90 ~~~l~~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l 162 (266)
..++.+..+++++++++|||||||||++|.+++.+ .+.+++|+++|||+||.|||+|||++||.+|+.+|++|
T Consensus 168 ~~~~~~~~~~L~~~a~~D~LTGL~NR~~f~~~l~~~l~~~~~~~~~~ali~idid~fk~Ind~~G~~~gD~lL~~va~~L 247 (342)
T 3ezu_A 168 LFRLWNEARQLAAQSHFDALTGVMTRAGFFKTVGSLAYAAQRSGSNVGIMLIDLDYFKLVGDNYGHQTGDRILQLVAETI 247 (342)
T ss_dssp HHHHHHHHHHHHHHHHBCTTTCSBCHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCCCC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999999999998171766572469999999999999987519957999985078899888609545889999999998
Q ss_pred CCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEE----CCCCCCHHHHHH
Q ss_conf 1111100000013343036501686101234445899999863154067995689999999987----799899899999
Q gi|254781079|r 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPISTIIY 238 (266)
Q Consensus 163 ~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~----~~~~~~~~~ll~ 238 (266)
+..+++++.+||+|||||++++|+.+.+++..++++|+..+.+.. +..+.+++|+|++. ++++.++++++.
T Consensus 248 ~~~~~~~d~vaR~ggdeF~vll~~~~~~~a~~~aerl~~~i~~~~-----~~~~~~t~siGva~~~~~~~~~~~~~~Ll~ 322 (342)
T 3ezu_A 248 TSHLRRSDVVGRYDGDEFVVYLSPVEPASLRTVAENLRRSIEEES-----ARMVPVTASIGVAQGILGTDVDGGIEELVR 322 (342)
T ss_dssp HHTCCTTCEEEECSSSEEEEEESSCCHHHHHHHHHHHHHHHHHHT-----TTTCCEEEEEEEEEEECCSCHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEEEEEEEEECCCCCCCCCHHHHHH
T ss_conf 742255763333689889999589999999999999999986105-----872127999999961047999998999999
Q ss_pred HHHHHHHHHHHCCCCEEEE
Q ss_conf 9999999999709968999
Q gi|254781079|r 239 RADQALYVAKKSGRNRVVC 257 (266)
Q Consensus 239 ~Ad~Al~~AK~~gkn~~~~ 257 (266)
+||.|||+||++||||||.
T Consensus 323 ~Ad~AL~~AK~~G~Nrvvv 341 (342)
T 3ezu_A 323 LADECLMQAKYTGKNKVVV 341 (342)
T ss_dssp HHHHHHHHHHHSCSSSEEE
T ss_pred HHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999829997996
No 3
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A*
Probab=99.98 E-value=2.1e-31 Score=257.35 Aligned_cols=173 Identities=33% Similarity=0.495 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHH-------HCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 99999999999999961040105020489998887-------70897257554422100011468865444311000000
Q gi|254781079|r 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 (266)
Q Consensus 89 ~~~~l~~~~~~l~~~a~~D~LTgL~NR~~f~~~l~-------~~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~ 161 (266)
...++....+++++++++|+|||||||++|.+.++ +.+++++++++|||+||.|||+|||+.||++|+.++++
T Consensus 156 ~~~~~~~~~~~l~~la~~D~LTGL~NR~~l~~~l~~~l~~~~r~~~~~al~~idID~Fk~ind~~G~~~gd~lL~~va~~ 235 (358)
T 3bre_A 156 SQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGA 235 (358)
T ss_dssp HHHHHHHHHHHHHHHHHBCTTTCSBCHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999848186668444899999999999999862997899999885467777500604558999999999
Q ss_pred CCC-CCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEEEEEEEEC---CCCCCHHHH
Q ss_conf 011-11100000013343036501686101234445899999863154067-9956899999999877---998998999
Q gi|254781079|r 162 LVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAER---CHKEPISTI 236 (266)
Q Consensus 162 l~~-~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~t~s~Gia~~---~~~~~~~~l 236 (266)
+.. ..++.++++|+|||||++++|+.+.+++..+++++++.+........ ......+|+|+||+.+ .++++++++
T Consensus 236 l~~~~~r~~d~vaR~ggdeF~ill~~~~~~~a~~~aerl~~~i~~~~~~~~~~~~~~~lt~SiGIa~~~~~~~~~~~~~l 315 (358)
T 3bre_A 236 IREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVL 315 (358)
T ss_dssp HHTTCCSTTCEEEEEETTEEEEEEETCCHHHHHHHHHHHHHHHHTTCCEESSSSTTEECCEEEEEEEECCCSSSCCTHHH
T ss_pred HHHHHCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHH
T ss_conf 98750666748998269479999578663689999999999999604653468885389999999997779999749999
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 9999999999997099689994021
Q gi|254781079|r 237 IYRADQALYVAKKSGRNRVVCFSDI 261 (266)
Q Consensus 237 l~~Ad~Al~~AK~~gkn~~~~~~~~ 261 (266)
+++||.|||+||++|||+|++|++-
T Consensus 316 l~~Ad~AL~~AK~~G~n~v~~~~~~ 340 (358)
T 3bre_A 316 IEMADQALYQAKNNGRNQVGLMEQP 340 (358)
T ss_dssp HHHHHHHHHHHHTTTSSSEEEECC-
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9999999999998489979993898
No 4
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=99.95 E-value=1e-28 Score=236.81 Aligned_cols=161 Identities=22% Similarity=0.295 Sum_probs=140.6
Q ss_pred HHHHHHHHCCCHHCCCCHHHHHHHHHH-----CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHH
Q ss_conf 999999610401050204899988877-----089725755442210001146886544431100000001111100000
Q gi|254781079|r 98 NRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 (266)
Q Consensus 98 ~~l~~~a~~D~LTgL~NR~~f~~~l~~-----~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~ 172 (266)
.+|+++|++||+||||||.+|.++++. ...++++++++||+|+.||+.||++.||++|+.+|++|+..+++++.+
T Consensus 1 srl~~lA~~D~lTgL~Nr~~f~~~l~~~~~~~~~~~~~l~~i~Id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~~~~~ 80 (178)
T 3mtk_A 1 SKLEFLAFYDELTGLPNKNSLIRWLNLKVSQMDCIDTYLIFLEVRDLEKLNVTYGYDLVDELIIHISKRIKDIAGEGNKA 80 (178)
T ss_dssp -CHHHHHHBCTTTCSBCHHHHHHHHHHHHHSSCCTTEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHCSSSEE
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 97789851572248603999999999999855389869999988728999887097036689998999999854778779
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 01334303650168610123444589999986315406799568999999998779-98998999999999999999709
Q gi|254781079|r 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251 (266)
Q Consensus 173 ~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~g 251 (266)
||++||+|++++|+.+ +..+++++...+... + ..++..+.+++|+|++.++ ++.++++++++|+.||++||+.|
T Consensus 81 ~R~~~d~F~ill~~~~---~~~~~~~~~~~l~~~-~-~~~~~~~~~~~siGia~~~~~~~~~~~ll~~A~~Al~~Ak~~G 155 (178)
T 3mtk_A 81 FKIGFDRFAIICKSEN---ISDFIERMLSQLLLP-Y-NVNGNLIRVNFNIGAAQIENSNEAAANLMRRCDLALIKAKEEG 155 (178)
T ss_dssp EEEETTEEEEEEECSS---HHHHHHHHHHHHTSC-E-EETTEEECCCEEEEEEECC----CHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCEEEEECCCCC---HHHHHHHHHHHCCCC-E-EECCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9738988999879974---999999999853377-2-2055279998889999978999999999999999999999859
Q ss_pred CCEEEECCH-HHC
Q ss_conf 968999402-100
Q gi|254781079|r 252 RNRVVCFSD-IEN 263 (266)
Q Consensus 252 kn~~~~~~~-~~~ 263 (266)
+|++++|++ ++.
T Consensus 156 ~n~~~~y~~~m~~ 168 (178)
T 3mtk_A 156 LNEYVIFKPSIEI 168 (178)
T ss_dssp TTCEEEEEC-CEE
T ss_pred CCEEEEECHHHHH
T ss_conf 9989998879999
No 5
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=99.95 E-value=7.3e-28 Score=230.31 Aligned_cols=174 Identities=33% Similarity=0.475 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 99999999999999610401050204899988877-------08972575544221000114688654443110000000
Q gi|254781079|r 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 (266)
Q Consensus 90 ~~~l~~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l 162 (266)
..++.+..+++++++++|||||||||++|.++++. .+.++++++++||+|+.+|+.||++.+|.+++.+++++
T Consensus 16 ~~~l~~~~~~l~~la~~D~lTGL~NR~~f~~~l~~~l~~~~~~~~~~~l~~i~i~~~~~l~~~~G~~~~d~li~~~a~~l 95 (206)
T 3i5c_A 16 NYHLENEVARLKKLVNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAI 95 (206)
T ss_dssp HHHHHHHHHHHHTTCCBCTTTCSBCHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999543866683508899999999999987339948999998983348873359755309999888888
Q ss_pred C-CCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCEEEEEEEEEEEEC---CCCCCHHHHH
Q ss_conf 1-1111000000133430365016861012344458999998631540-679956899999999877---9989989999
Q gi|254781079|r 163 V-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAER---CHKEPISTII 237 (266)
Q Consensus 163 ~-~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~t~s~Gia~~---~~~~~~~~ll 237 (266)
. ...+.+++++|+++|+|+|++++.+.+++..+++++.+.+...... ........+++|+|++.+ .++.++++++
T Consensus 96 ~~~~~~~~d~v~R~~~d~Favl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~vt~siGia~~~~~~~~~~~~~ll 175 (206)
T 3i5c_A 96 REGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLI 175 (206)
T ss_dssp HTTCCSTTCEEEEEETTEEEEEEETCCHHHHHHHHHHHHHHHHHTCCEECSSSTTEECCEEEEEEEECCCSTTCCTHHHH
T ss_pred HHHCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHH
T ss_conf 77425555444634887677663899989999999999999997305524677755416899999986799998799999
Q ss_pred HHHHHHHHHHHHCCCCEEEECCHHHC
Q ss_conf 99999999999709968999402100
Q gi|254781079|r 238 YRADQALYVAKKSGRNRVVCFSDIEN 263 (266)
Q Consensus 238 ~~Ad~Al~~AK~~gkn~~~~~~~~~~ 263 (266)
++||.||+.||++|||+|++|++...
T Consensus 176 ~~A~~AL~~AK~~G~n~i~~~~~~~~ 201 (206)
T 3i5c_A 176 EMADQALYQAKNNGRNQVGLMEQPVP 201 (206)
T ss_dssp HHHHHHHHHHHHTTSSSEEEC-----
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999999999868997999369999
No 6
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=99.95 E-value=2.2e-28 Score=234.26 Aligned_cols=163 Identities=36% Similarity=0.554 Sum_probs=148.1
Q ss_pred HHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCH
Q ss_conf 999999610401050204899988877-------0897257554422100011468865444311000000011111000
Q gi|254781079|r 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 (266)
Q Consensus 98 ~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~ 170 (266)
+++++++++||+||||||++|.++++. .+.++++++++||+|+.+|+.||++.||++|+.+++++...+++++
T Consensus 2 e~l~~la~~D~lTgL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~id~~~~i~~~~G~~~~d~ll~~va~~l~~~~~~~~ 81 (177)
T 3ign_A 2 EQLAKLSMTDRLTGLLNRGTWENLVDAEYERFRRYGQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIRQSD 81 (177)
T ss_dssp ---CTTSSBCTTTCSEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 68998758561338525899999999999998850996899999888755101254874303677754331100113577
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0001334303650168610123444589999986315406799568999999998779-989989999999999999997
Q gi|254781079|r 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKK 249 (266)
Q Consensus 171 ~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~ 249 (266)
.++|+++|+|++++|+.+.+++..+.+++...+.+..+.. ++..+.+++|+|++.++ +++++++++++||.||++||+
T Consensus 82 ~~~r~~~d~f~il~~~~~~~~~~~~~~rl~~~i~~~~~~~-~~~~~~~~~siGia~~~~~~~~~~~ll~~A~~AL~~AK~ 160 (177)
T 3ign_A 82 SAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVST-SAGDIQYTVSMGIAQLTETPENYMQWMQKADEALYKAKE 160 (177)
T ss_dssp EEEECSSSEEEEEEETCCHHHHHHHHHHHHHHHHTCCEEC-SSCEECCCEEEEEEECCSCCSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2146349889997089997999999999999998264444-688740578899996479998899999999999999998
Q ss_pred CCCCEEEECCHH
Q ss_conf 099689994021
Q gi|254781079|r 250 SGRNRVVCFSDI 261 (266)
Q Consensus 250 ~gkn~~~~~~~~ 261 (266)
.|||+||++-|-
T Consensus 161 ~G~N~v~~~~~~ 172 (177)
T 3ign_A 161 SGRNKVVVSLEH 172 (177)
T ss_dssp TTSSSEEECC--
T ss_pred HCCCEEEEEEEC
T ss_conf 299979999841
No 7
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=99.95 E-value=3e-28 Score=233.21 Aligned_cols=165 Identities=21% Similarity=0.312 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 999999999610401050204899988877-------0897257554422100011468865444311000000011111
Q gi|254781079|r 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 (266)
Q Consensus 95 ~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~ 167 (266)
..++++++++++||+||||||.+|.++++. .+.++++++|+||+|+.+|+.||++.||++|+.++++|+..++
T Consensus 4 ~~e~~l~~~a~~D~lTgl~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~i~~~~~i~~~~G~~~~d~~l~~~a~~l~~~~~ 83 (177)
T 3hva_A 4 GSEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFG 83 (177)
T ss_dssp --------CCCBCTTTCSEEHHHHHHHHHHHHHHHHHTCCCEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999827677678205999999999999999854995799997133688999981934678999999876202466
Q ss_pred CCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHH
Q ss_conf 0000001334303650168610123444589999986315406799568999999998779-989989999999999999
Q gi|254781079|r 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246 (266)
Q Consensus 168 ~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~ 246 (266)
+++.++|+++|+|++++|+.+.+++..+++++...+...++. .++..+.+++|+|++.++ ++.++++++.+|+.||++
T Consensus 84 ~~~~~~R~~~~~F~il~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~siGia~~~~~~~~~~~ll~~A~~Al~~ 162 (177)
T 3hva_A 84 EEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHLFE-LNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADD 162 (177)
T ss_dssp GGCEEEECSSSEEEEEEETCCHHHHHHHHHHHHHHHHTCCEE-ETTEEECCCEEEEEEEECTTCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC-CCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 515888658998999969999999999999999999676644-5796167889999999589999999999999999999
Q ss_pred HHHCCCCEEEECCH
Q ss_conf 99709968999402
Q gi|254781079|r 247 AKKSGRNRVVCFSD 260 (266)
Q Consensus 247 AK~~gkn~~~~~~~ 260 (266)
||++|+|+|++|++
T Consensus 163 Ak~~G~n~~~~y~p 176 (177)
T 3hva_A 163 AARKGGSQIKQYNP 176 (177)
T ss_dssp HHTTCSSEEEC---
T ss_pred HHHHCCCEEEEECC
T ss_conf 99978997999589
No 8
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=99.92 E-value=1.6e-25 Score=212.54 Aligned_cols=153 Identities=29% Similarity=0.485 Sum_probs=135.2
Q ss_pred CCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCC
Q ss_conf 0401050204899988877-------089725755442210001146886544431100000001111100000013343
Q gi|254781079|r 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 (266)
Q Consensus 106 ~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gd 178 (266)
.|||||||||++|.+++++ .+.++++++|+||+|+.+|+.+|++.||++|+.++++|+..+++++.+||+++|
T Consensus 1 iD~lTGL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~i~~~~~i~~~~G~~~~d~~l~~va~~l~~~~~~~~~v~r~~~~ 80 (171)
T 3icl_A 1 MDTVTGLPNRQLFCDRLLQALAAHERDGNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRDGDTVARIGGD 80 (171)
T ss_dssp CCTTTCCCCHHHHHHHHHHHHHHCCCTTSCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHSCTTCEEEEETTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 90212733489999999999999875399499999984188898886082677789999999999877998699997588
Q ss_pred EEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 036501686-10123444589999986315406799568999999998779-9899899999999999999970996899
Q gi|254781079|r 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 (266)
Q Consensus 179 eF~ill~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gkn~~~ 256 (266)
+|++++|+. +..+.....+++...+... ...++....+++|+|++.++ ++.++++++.+|+.||++||++|+|+++
T Consensus 81 ~F~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~Gia~~~~~~~~~~~ll~~A~~AL~~Ak~~g~n~~~ 158 (171)
T 3icl_A 81 KFTILLNGAKDTLNGALVAQKILDGLAQP--FVFGAQQIVISVSIGIAVSPADGETMEQLLRNADTAMYHAKSRGKNNYQ 158 (171)
T ss_dssp EEEEEESSCTTSTTTHHHHHHHHHHHTSC--EEETTEEECCCEEEEEEETTTTCSSHHHHHHHHHHHHHHHHHHCSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCH--HHCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 58886699984999999999999998360--0104656448889998527899999999999999999999984999899
Q ss_pred ECCH
Q ss_conf 9402
Q gi|254781079|r 257 CFSD 260 (266)
Q Consensus 257 ~~~~ 260 (266)
+|++
T Consensus 159 ~y~~ 162 (171)
T 3icl_A 159 FFSP 162 (171)
T ss_dssp ECCC
T ss_pred EECH
T ss_conf 9887
No 9
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=99.88 E-value=9.5e-25 Score=206.54 Aligned_cols=167 Identities=21% Similarity=0.307 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHCCCHHCCCCHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 9999999996104010502048999888770-------897257554422100011468865444311000000011111
Q gi|254781079|r 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 (266)
Q Consensus 95 ~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~~-------~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~ 167 (266)
.++++|++++++||+||||||++|.+++++. +++++|+++||++|+.||+.|||+.||++|+.+|++|+..++
T Consensus 4 ~~Ee~L~~~a~~D~lTgL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~i~~~~~in~~~G~~~gD~lL~~ia~~L~~~l~ 83 (437)
T 3hvb_A 4 GSEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFG 83 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999955474447520999999999999988744997899999898777999873909999999999999998669
Q ss_pred CCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHH
Q ss_conf 0000001334303650168610123444589999986315406799568999999998779-989989999999999999
Q gi|254781079|r 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYV 246 (266)
Q Consensus 168 ~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~ 246 (266)
+++.+||++||+|++++|+.+..++...++++...+....+ ...+..+.+++|+|++.++ +..+..+++..|+.|++.
T Consensus 84 ~~~~laRl~~~~F~ill~~~~~~~~~~~~~~l~~~l~~~~~-~~~g~~~~~~~sigi~~~~~~~~~~~~~~~~a~~a~~~ 162 (437)
T 3hvb_A 84 EEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHLF-ELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADD 162 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEEEECCEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98779997573203215889878877655468999975551-03771588864124002574223189999999999998
Q ss_pred HHHCCCCEEEECCHHH
Q ss_conf 9970996899940210
Q gi|254781079|r 247 AKKSGRNRVVCFSDIE 262 (266)
Q Consensus 247 AK~~gkn~~~~~~~~~ 262 (266)
+|..++++...+.+..
T Consensus 163 ~~~~~~~~~~~~~~~~ 178 (437)
T 3hvb_A 163 AARKGGSQIKQYNPAE 178 (437)
T ss_dssp ----------------
T ss_pred HHHHCCCCCCCCCCCH
T ss_conf 8762667654422102
No 10
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=99.82 E-value=1.1e-21 Score=183.07 Aligned_cols=155 Identities=14% Similarity=0.177 Sum_probs=124.4
Q ss_pred HCCCHHCCCCHHHHHHHHHHC---CCCEEEEEEEC---CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCC
Q ss_conf 104010502048999888770---89725755442---210001146886544431100000001111100000013343
Q gi|254781079|r 105 RIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDI---DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 (266)
Q Consensus 105 ~~D~LTgL~NR~~f~~~l~~~---~~~~~l~~idi---d~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gd 178 (266)
..|++||||||.+|.++++.. ..+++++.+++ ++|+.||+.||++.||.+|+.++++++... +++.++|+++|
T Consensus 1 ~~D~lTGL~Nr~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~G~~~~d~ll~~~~~~l~~~~-~~~~~~R~~~~ 79 (176)
T 3hvw_A 1 MIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAEL-PDFTLYKISPT 79 (176)
T ss_dssp --------CCHHHHHHHHHHHHHHHSEEEEEEEECSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC-TTSCEEEEETT
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf 98474473479999999999998489997899999875208899885085657999999999998714-47537997299
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCC-CCCH-HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 036501686101234445899999863154067995689999999987799-8998-99999999999999970996899
Q gi|254781079|r 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPI-STIIYRADQALYVAKKSGRNRVV 256 (266)
Q Consensus 179 eF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~-~~~~-~~ll~~Ad~Al~~AK~~gkn~~~ 256 (266)
||++++|..+.+++...++++...+... ....+..+.+++|+|++.++. +.+. +++++.|+.||+.||+.|+| ++
T Consensus 80 ~F~il~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~siGv~~~~~~~~~~~~~l~~~a~~Al~~Ak~~g~~-~~ 156 (176)
T 3hvw_A 80 RFGLLLPRQQQEETESVCLRLLRAFESP--VVCRGIPIKANVGLGVLPLADDTLDGDQDWLRLVVSAADDARDRGVG-WA 156 (176)
T ss_dssp EEEEEEEGGGGGGHHHHHHHHHHHTTSC--EEETTEEECCCCEEEEEEEEGGGTGGGSCCHHHHHHHHHHHHHHTCS-CE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCC--EEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC-EE
T ss_conf 8999968999899999999999998272--03678422240689999816998874999999999999999971999-89
Q ss_pred ECCHHHC
Q ss_conf 9402100
Q gi|254781079|r 257 CFSDIEN 263 (266)
Q Consensus 257 ~~~~~~~ 263 (266)
+|+.-.+
T Consensus 157 ~y~~~~~ 163 (176)
T 3hvw_A 157 RYNPPLD 163 (176)
T ss_dssp ECCCCSS
T ss_pred EECHHHH
T ss_conf 9881666
No 11
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=96.25 E-value=0.011 Score=38.23 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=72.7
Q ss_pred CEEEEEEECCCCCC-CCCCCC-CCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 72575544221000-114688-6544431100000001111100000013343036501686101234445899999863
Q gi|254781079|r 128 KLSIVFFDIDYFKQ-INDNFG-HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 (266)
Q Consensus 128 ~~~l~~idid~fk~-iNd~~G-~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~ 205 (266)
+..++-+||+++.. .-|..+ ++.-=++.+..+...+.....+.+.+.+|||.|.+++|..+..+...++..+.....
T Consensus 131 ~v~IaH~Dvnd~T~~~T~~~spydt~~~I~~ly~~l~~~~~~~g~L~Ff~GGDN~m~v~~~~~~~~~~d~i~~i~~~~~- 209 (268)
T 2qv6_A 131 YVQIAHIDINNITGTLTDIVSAYDTYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPSNGMSEEDFLDIFNRINKKYK- 209 (268)
T ss_dssp CEEEEEEEETTHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTTCCCEEEETTEEEEECTTCCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHC-
T ss_conf 4599998221652111046767799999999999999999975988997258569998899767789999998776508-
Q ss_pred CCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-CEEEECCH
Q ss_conf 15406799568999999998779989989999999999999997099-68999402
Q gi|254781079|r 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR-NRVVCFSD 260 (266)
Q Consensus 206 ~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gk-n~~~~~~~ 260 (266)
+.+.+.+|++. ++.+....|..||..-+...- .+++...+
T Consensus 210 ----------i~LkvGIG~g~-----tar~A~~~At~aLe~iR~~~~~~~~~~~~~ 250 (268)
T 2qv6_A 210 ----------IELKAGIGIGR-----TAEDASNLADIGLEKIRGKLVDKNVCTLKQ 250 (268)
T ss_dssp ----------CCEEEEEEEES-----SHHHHHHHHHHHHHHHHTTCSSSSEEEEEC
T ss_pred ----------CEEEEEECCCC-----CHHHHHHHHHHHHHHHHCCCCCCEEEEEEH
T ss_conf ----------32898655688-----889999999999999971374424999610
No 12
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=94.11 E-value=0.26 Score=27.81 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=60.6
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC-CCHHHCCCCCCEEEEEC--CCCCHHH---HHHHHHHHH
Q ss_conf 97257554422100011468865444311000000011111-00000013343036501--6861012---344458999
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAA--LGSSEQE---AAILANDLR 200 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~-~~~~~~R~~gdeF~ill--~~~~~~~---~~~~~~~l~ 200 (266)
...+++++||-+|..+-+.++.+.--++|...-+.+...+. .+..+-++-||.+..++ |....+. +...+..+.
T Consensus 9 ~~vtilF~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~~a~fg~p~~~~~~~~~a~~~~~~~~ 88 (204)
T 1yk9_A 9 DEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALADFALDMT 88 (204)
T ss_dssp SCEEEEEEEESCSSCSSCCCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCTTHHHHHHTHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 86899998637715988749999999999999999875565279789986145100316998532569999998888888
Q ss_pred HHHHHCCCCCCCCCEEEEEEEEEEE
Q ss_conf 9986315406799568999999998
Q gi|254781079|r 201 KIIENSQINISSGPSIHITISAGIA 225 (266)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~t~s~Gia 225 (266)
.......-.......+.+.++.|-+
T Consensus 89 ~~~~~~~~~~~~~l~~riGIh~G~v 113 (204)
T 1yk9_A 89 NVAAQLKDPRGNPVPLRVGLATGPV 113 (204)
T ss_dssp HHTTTCCSSSCCCCCEEEEEEEECE
T ss_pred HHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 8887766521887128877765263
No 13
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=93.80 E-value=0.074 Score=31.94 Aligned_cols=122 Identities=9% Similarity=0.050 Sum_probs=72.3
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCH-HH-CCCCCCEEEEECCCC-----CHHHHHHHHHHH
Q ss_conf 97257554422100011468865444311000000011111000-00-013343036501686-----101234445899
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FV-GRLGGEEFAAAALGS-----SEQEAAILANDL 199 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~-~~-~R~~gdeF~ill~~~-----~~~~~~~~~~~l 199 (266)
+..++++.||-+|..+-+.++.+.--.+|..+...+...+.++. .. -++-||.+.+++... ....+...+..+
T Consensus 8 ~~vtvlF~Di~gft~l~e~~~~~~~~~~l~~~~~~~~~~i~~~gG~~~ik~~GD~~~~~fg~~~~~~~~~~~a~~~a~~~ 87 (190)
T 3et6_A 8 PEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDHADVLLEFALRM 87 (190)
T ss_dssp EEEEEEEEEETTHHHHTTTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCSTHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 98999999858836988869999999999999999877877427727887744446773168876177899888888889
Q ss_pred HHHHHHCCCCCCCCCEEEEEEEEEEEEC---C-CCCC---HHHHHHHHHHHHHHHH
Q ss_conf 9998631540679956899999999877---9-9899---8999999999999999
Q gi|254781079|r 200 RKIIENSQINISSGPSIHITISAGIAER---C-HKEP---ISTIIYRADQALYVAK 248 (266)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~t~s~Gia~~---~-~~~~---~~~ll~~Ad~Al~~AK 248 (266)
................+.+.++.|-+.. . ...+ ..+-+..|..-...||
T Consensus 88 ~~~~~~~~~~~~~~l~~rigi~~G~v~~g~~g~~~~~~~~~G~~Vn~A~rle~~a~ 143 (190)
T 3et6_A 88 HEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGE 143 (190)
T ss_dssp HHHHHTSCCC---CCCEEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHCCC
T ss_conf 99899886414997138873225789971278752688897228999999983579
No 14
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=93.53 E-value=0.1 Score=30.82 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=74.9
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 72575544221000114688654443110000000111110000001334303650168610123444589999986315
Q gi|254781079|r 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 (266)
Q Consensus 128 ~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~ 207 (266)
..+|++.||-+|..+-+.+|.+.--+++.............+..+.++-||+|.++++ ++..+...+-++.+.+....
T Consensus 215 ~vtV~F~DivgfT~ls~~l~~~~l~~ll~~f~~~~~~i~~~~G~viK~iGD~vl~vf~--~p~~a~~~Al~l~~~~~~~~ 292 (407)
T 1y10_A 215 QVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTAPPVWFIKTIGDAVMLVCP--DPAPLLDTVLKLVEVVDTDN 292 (407)
T ss_dssp EEEEEEEEECSBCTTSCBCCHHHHHHHHHHHHHHHHHHCCTTCEEEEEETTEEEEEES--SHHHHHHHHHHHHHHHHTCT
T ss_pred EEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCC--CHHHHHHHHHHHHHHHHHCC
T ss_conf 8999999825859999869999999999999999999998198799871757888079--97999999999999997237
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 40679956899999999877998998999999999999999709968999
Q gi|254781079|r 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 (266)
Q Consensus 208 ~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~ 257 (266)
..+.+++.+..|-+....++-+.+-+..|-.-...|+ .++|.+
T Consensus 293 ----~~p~lRiGih~G~V~~~~gdv~G~~VN~AaRL~s~A~---pg~Ilv 335 (407)
T 1y10_A 293 ----NFPRLRAGVASGMAVSRAGDWFGSPVNVASRVTGVAR---PGAVLV 335 (407)
T ss_dssp ----TSCCEEEEEEEEEEEEETTEEEEHHHHHHHHHHHHCC---TTCEEE
T ss_pred ----CCCCEEEEEEEEEEEEECCCEECCHHHHHHHHHCCCC---CCEEEE
T ss_conf ----8875455546403795479576848999999970579---996998
No 15
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis CDC1551} PDB: 1ybu_A*
Probab=92.51 E-value=0.044 Score=33.71 Aligned_cols=120 Identities=17% Similarity=0.115 Sum_probs=80.3
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 972575544221000114688654443110000000111110-0000013343036501686101234445899999863
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~ 205 (266)
...+++++||.+|..+-+.++.+...+++....+.+...+.+ +..+.++.||.|.++++. ..++...+.++.+.+.+
T Consensus 16 ~~~tVlf~Di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~k~~GD~~la~f~~--~~~Av~~A~~i~~~~~~ 93 (184)
T 1ybt_A 16 MLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTS--PSAAIACADDIVDAVAA 93 (184)
T ss_dssp EEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESC--HHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECC--HHHHHHHHHHHHHHHHC
T ss_conf 6899999985272999886999999999999999987789877959998658737875022--26789999987655531
Q ss_pred CCCCCCCCCEEEEEEEEEEEE---CCCC-CCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 154067995689999999987---7998-998999999999999999709968999
Q gi|254781079|r 206 SQINISSGPSIHITISAGIAE---RCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 (266)
Q Consensus 206 ~~~~~~~~~~~~~t~s~Gia~---~~~~-~~~~~ll~~Ad~Al~~AK~~gkn~~~~ 257 (266)
.. ..+++.++.|-+. .... +-+.+-+..|..-...|+ ++++.+
T Consensus 94 ~~------l~~riGih~G~v~~~~~~~~~~~~G~~VN~AaRL~~~a~---~~~Ilv 140 (184)
T 1ybt_A 94 LG------IEVRIGIHAGEVEVRDASHGTDVAGVAVHIGARVCALAG---PSEVLV 140 (184)
T ss_dssp TT------CCEEEEEEEEEEEEEECSSCEEEESHHHHHHHHHHHHSC---TTCEEE
T ss_pred CC------CCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCC---CCEEEE
T ss_conf 17------532357505779984267787635837689999971479---998999
No 16
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=91.58 E-value=0.1 Score=30.89 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=73.3
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECC--CCCH---HHHHHHHHHHH
Q ss_conf 972575544221000114688654443110000000111110-00000133430365016--8610---12344458999
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAAL--GSSE---QEAAILANDLR 200 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~--~~~~---~~~~~~~~~l~ 200 (266)
+..+++++||.+|..+-+.++.+.--.+|...-..+...+.. +..+.++.||.+.+++. .... ..+...+..+.
T Consensus 33 ~~vtVlF~Di~gfT~lse~~~~~~~~~~L~~~~~~~~~~i~~~gG~i~k~~GD~~m~~f~~~~~~~~~~~~a~~~al~~~ 112 (220)
T 1azs_A 33 DNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMI 112 (220)
T ss_dssp EEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 97899998748748998859999999999999999999999669889997571456761898775269999998799999
Q ss_pred HHHHHCCCCCCCCCEEEEEEEEEEEEC---CCC-CC---HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 998631540679956899999999877---998-99---8999999999999999709968999
Q gi|254781079|r 201 KIIENSQINISSGPSIHITISAGIAER---CHK-EP---ISTIIYRADQALYVAKKSGRNRVVC 257 (266)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~t~s~Gia~~---~~~-~~---~~~ll~~Ad~Al~~AK~~gkn~~~~ 257 (266)
..+.+..........+++.++.|-+.. ... .. +.+.+..|..-...++ .++|.+
T Consensus 113 ~~~~~~~~~~~~~l~~riGIh~G~v~~G~iG~~r~~~~v~G~~Vn~AaRLe~~a~---~~~Ilv 173 (220)
T 1azs_A 113 EAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGK---AGRIHI 173 (220)
T ss_dssp HHHHHHHHHHCSCCEEEEEEEEEEEEEEECSSSSCCCEEESHHHHHHHHHHHTCC---TTSEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCC---CCEEEE
T ss_conf 9999865302887433566653881577733550224406749999999970489---997998
No 17
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=91.15 E-value=0.37 Score=26.66 Aligned_cols=126 Identities=9% Similarity=0.053 Sum_probs=67.6
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC-CCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9725755442210001146886544431100000001111-100000013343036501686101234445899999863
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~-~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~ 205 (266)
+..++++.||-+|..+-+..|.+.-..++......+...+ +.+..+.++-||.+...++... .+...+..+...+.+
T Consensus 6 r~~tilF~Di~gfT~l~e~~~~~~~~~l~~~~~~~~~~~i~~~gG~i~k~~GD~~la~f~~~~--~~~~~~~~~~~~~~~ 83 (189)
T 3mr7_A 6 RLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQ--AALRCALEIQQAMQQ 83 (189)
T ss_dssp EEEEEEEEEECCCCGGGCCCCHHHHHHHHHHHHHTHHHHHHHTTCEEEEEETTEEEEEESSHH--HHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHH--HHHHHHHHHHHHHHH
T ss_conf 589999998357369887699999999999999999999998398899861675203101227--899999999999998
Q ss_pred CCCCC--CCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 15406--79956899999999877998998999999999999999709968999
Q gi|254781079|r 206 SQINI--SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 (266)
Q Consensus 206 ~~~~~--~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~ 257 (266)
..... .....+.+.+.+|-....+.+-..+-+..|-.-+..|+ .+++.+
T Consensus 84 ~~~~~~~~~~l~i~igi~~g~~~~~~~~~~G~~VN~AaRle~~a~---~g~Ili 134 (189)
T 3mr7_A 84 REEDTPRKERIQYRIGINIGDIVLEDGDIFGDAVNVAARLEAISE---PGAICV 134 (189)
T ss_dssp HTTTSCGGGCCCEEEEEEEEEEEECSSCEESHHHHHHHHHHHHSC---TTCEEE
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHCCC---CCEEEE
T ss_conf 765245456632257656416655465562826479999981289---998998
No 18
>2wz1_A Guanylate cyclase soluble subunit beta-1; alternative splicing, lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-binding, GUCY1B3; 1.63A {Homo sapiens}
Probab=83.93 E-value=1.4 Score=22.18 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=55.5
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCC-C---CCCHHHCCCCC----CCCCCHHHCCCCCCEEEEEC--CCCCHHHHHHH-
Q ss_conf 97257554422100011468865444-3---11000000011----11100000013343036501--68610123444-
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGD-K---VIAFLSDQLVV----VFGTPMFVGRLGGEEFAAAA--LGSSEQEAAIL- 195 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD-~---~L~~va~~l~~----~~~~~~~~~R~~gdeF~ill--~~~~~~~~~~~- 195 (266)
+..++++.||-+|..+-+.+....+- + +|..+...+.. ..+.+..+-++-||.+..++ |....+.+...
T Consensus 11 ~~vtVlF~Di~gfT~l~e~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~g~~~k~~GD~i~a~f~~p~~~~~~a~~a~ 90 (219)
T 2wz1_A 11 DNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARSIC 90 (219)
T ss_dssp EEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSCCTTHHHHHH
T ss_pred CCEEEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHH
T ss_conf 76899999828806999867974449999999999999999999986267753999647428998679971778999999
Q ss_pred --HHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC---C-CCC---CHHHHHHHHHHHHHHHH
Q ss_conf --58999998631540679956899999999877---9-989---98999999999999999
Q gi|254781079|r 196 --ANDLRKIIENSQINISSGPSIHITISAGIAER---C-HKE---PISTIIYRADQALYVAK 248 (266)
Q Consensus 196 --~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~---~-~~~---~~~~ll~~Ad~Al~~AK 248 (266)
+..+.+.+.+.... .....+.+.++.|-+.. . ... -..+-+..|-.-...|+
T Consensus 91 ~~a~~~~~~~~~~~~~-~~~l~~riGih~G~v~~g~vG~~~~~~~~~G~~VN~AaRLe~~a~ 151 (219)
T 2wz1_A 91 HLALDMMEIAGQVQVD-GESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGE 151 (219)
T ss_dssp HHHHHHHHHHTTCEET-TEECCEEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHH-CCEEEEEEEEEECCEEEEECCCCCCCCCEECCHHHHHHHHHHCCC
T ss_conf 9988888877655420-210246544435674885316766456400759999999984589
No 19
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=82.83 E-value=2 Score=21.09 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=41.4
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC-CCHHHCCCCCCEEEEECCC
Q ss_conf 97257554422100011468865444311000000011111-0000001334303650168
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALG 186 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~-~~~~~~R~~gdeF~ill~~ 186 (266)
+..+++++||.+|..+-+.++.+.-=++|..+-..+...+. .+..+.++-||.+.+++..
T Consensus 26 r~vtvlF~DI~gfT~l~~~~~~~~~~~~l~~~~~~~~~~v~~~~G~v~k~~GD~~~~~~~~ 86 (219)
T 1wc3_A 26 RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGA 86 (219)
T ss_dssp EEEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESS
T ss_pred EEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf 6999999994677899886999999999999999999999986988999966622103578
No 20
>1ab8_A Adenylyl cyclase; lyase, plasmid, complex (transferase/inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=82.38 E-value=2.3 Score=20.59 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=51.8
Q ss_pred CCEEEEEEECCCCCCCCCCCCCC-CCCCCCCHHHCCCC---CCCC----CCHHHCCCCCCEEEEEC--CCCC--------
Q ss_conf 97257554422100011468865-44431100000001---1111----00000013343036501--6861--------
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHP-VGDKVIAFLSDQLV---VVFG----TPMFVGRLGGEEFAAAA--LGSS-------- 188 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~-~gD~~L~~va~~l~---~~~~----~~~~~~R~~gdeF~ill--~~~~-------- 188 (266)
+..++++.||-+|..+-+.+.-+ .+++++..+.+.++ ..+. .+..+-++-||.+.+++ |..+
T Consensus 13 ~~VtVlF~Di~gFT~lse~~~~~~~~~e~~~lLn~~~~~fd~~~~~~~~~gg~~~k~iGD~~ma~fG~~~~~~~~~~~~~ 92 (220)
T 1ab8_A 13 DCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEP 92 (220)
T ss_dssp EEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCCSCCC------
T ss_pred CCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCHHHHCH
T ss_conf 87899998758854889746865799999999999999999999888617948999946858999668888751133244
Q ss_pred ------HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEE
Q ss_conf ------0123444589999986315406799568999999998
Q gi|254781079|r 189 ------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 (266)
Q Consensus 189 ------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia 225 (266)
...+...+-.+.+.+.+..........+++.++.|-+
T Consensus 93 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~l~~rIGIhtG~v 135 (220)
T 1ab8_A 93 ERQYMHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPV 135 (220)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEE
T ss_conf 5669999999999999998898732267997359997444128
No 21
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=81.45 E-value=1.9 Score=21.13 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=47.0
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 8972575544221000114688654443110000000111110-00000133430365016861012344458999998
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l 203 (266)
..+.++++.||.+|..+-+..+. .-.++|...-..+...+.. +..+..+-||-|.++++. +.++...+.++...+
T Consensus 10 ~~~vtilF~DI~gfT~l~~~~~~-~~~~~l~~~~~~~~~~i~~~~G~~~k~~GD~~~~~f~~--p~~a~~~a~~~q~~~ 85 (235)
T 1fx2_A 10 TDPVTLIFTDIESSTALWAAHPD-LMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKS--PFAAVQLAQELQLCF 85 (235)
T ss_dssp TSCEEEEEEEETTHHHHHHHCTT-THHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESC--HHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECCHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCC--CHHHHHHHHHHHHHH
T ss_conf 89699999864587999986999-99999999999999999867909999738779997289--515689999999999
No 22
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=77.26 E-value=2.4 Score=20.44 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=41.6
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC-CCHHHCCCCCCEEEEECCC
Q ss_conf 97257554422100011468865444311000000011111-0000001334303650168
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALG 186 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~-~~~~~~R~~gdeF~ill~~ 186 (266)
++.+++++||.+|..+-+.++.+.--++|..+-..+...+. .+..+.++.||.+...++.
T Consensus 13 r~vtilf~Di~~fT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~~~~gd~~~~~f~~ 73 (208)
T 2w01_A 13 RPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGA 73 (208)
T ss_dssp EEEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESS
T ss_pred EEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCC
T ss_conf 9999999981781498775999999999999999999999973758999952237888489
No 23
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=63.75 E-value=2.4 Score=20.39 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHCCCCCCEEEEECCCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 000133430365016861---01234445899999863154067995689999999987799899899999999999999
Q gi|254781079|r 171 FVGRLGGEEFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 (266)
Q Consensus 171 ~~~R~~gdeF~ill~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~A 247 (266)
.+..++-||+.+=+.+.. ......++++|++.+.+.. .+++|+|++.. -++ |..|...+
T Consensus 103 ~ve~~SiDE~flDlt~~~~~~~~~~~~~a~~ir~~I~~~~---------gl~~siGia~n-------k~l--AKlAs~~~ 164 (221)
T 1im4_A 103 KIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKE---------KITVTVGVAPN-------KIL--AKIIADKS 164 (221)
T ss_dssp EEEEEETTEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHH---------CCCEEEEEESS-------HHH--HHHHHHHT
T ss_pred EEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH---------CCCEEEEECCC-------HHH--HHHHHHCC
T ss_conf 3998157737998368502200269999999999999986---------98766532685-------899--99998365
Q ss_pred HHCC
Q ss_conf 9709
Q gi|254781079|r 248 KKSG 251 (266)
Q Consensus 248 K~~g 251 (266)
|-.|
T Consensus 165 KP~g 168 (221)
T 1im4_A 165 KPNG 168 (221)
T ss_dssp CSSC
T ss_pred CCCC
T ss_conf 8897
No 24
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=46.60 E-value=11 Score=15.53 Aligned_cols=20 Identities=20% Similarity=0.066 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 98998999999999999999
Q gi|254781079|r 229 HKEPISTIIYRADQALYVAK 248 (266)
Q Consensus 229 ~~~~~~~ll~~Ad~Al~~AK 248 (266)
...+.++++..|...+...-
T Consensus 304 ~~~~~~~i~~~~~~Ll~~l~ 323 (354)
T 3bq0_A 304 HGISIDNAYKVAEDLLRELL 323 (354)
T ss_dssp SCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 98887999999999999987
No 25
>3mr3_A DNA polymerase ETA; POL ETA, polymerase, thymine dimer, CPD, XPV, xeroderma PIGM variant, DNA damage; HET: DNA TTD DZ4; 1.75A {Homo sapiens} PDB: 3mr2_A* 3mr5_A* 3mr6_A*
Probab=43.66 E-value=5.1 Score=17.95 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=5.2
Q ss_pred HCCCCEEEEEEE
Q ss_conf 708972575544
Q gi|254781079|r 124 SYNEKLSIVFFD 135 (266)
Q Consensus 124 ~~~~~~~l~~id 135 (266)
...+|.++..+.
T Consensus 231 ~~~KP~g~~~i~ 242 (435)
T 3mr3_A 231 GLNKPNRQTLVS 242 (435)
T ss_dssp HHTCSSCEEECC
T ss_pred HHCCCCCCCCCC
T ss_conf 756998634778
No 26
>3gqc_A DNA repair protein REV1; protein-DNA complex, alternative splicing, DNA damage, DNA repair, DNA synthesis; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=43.08 E-value=5.8 Score=17.50 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=36.5
Q ss_pred HHCCCCCCEEEEECCCC---CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 00013343036501686---101234445899999863154067995689999999987799899899999999999999
Q gi|254781079|r 171 FVGRLGGEEFAAAALGS---SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 (266)
Q Consensus 171 ~~~R~~gdeF~ill~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~A 247 (266)
.+..++-||+.+=+.+. ...++..+++.|+..+.+.. .+++|+||+... + .|..|...+
T Consensus 234 ~Ve~~SiDEa~lDvt~~~~~~~~~~~~la~~IR~~I~~~t---------gl~~SiGIa~nk-------l--lAKlAs~~a 295 (504)
T 3gqc_A 234 NIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKDQT---------KCAASVGIGSNI-------L--LARMATRKA 295 (504)
T ss_dssp CEEEEETTEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHH---------SCCEEEEEESSH-------H--HHHHHHHHH
T ss_pred CEEEECCCEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHH---------CCEEEECCCCCH-------H--HHHHHHHHC
T ss_conf 3498547528996465242219979999999999988750---------732763526628-------9--999889864
Q ss_pred HHCC
Q ss_conf 9709
Q gi|254781079|r 248 KKSG 251 (266)
Q Consensus 248 K~~g 251 (266)
|..|
T Consensus 296 KP~g 299 (504)
T 3gqc_A 296 KPDG 299 (504)
T ss_dssp CSSC
T ss_pred CCCC
T ss_conf 8886
No 27
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=39.43 E-value=9 Score=16.06 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 89989999999999999997
Q gi|254781079|r 230 KEPISTIIYRADQALYVAKK 249 (266)
Q Consensus 230 ~~~~~~ll~~Ad~Al~~AK~ 249 (266)
-.+.+++...|...+...-.
T Consensus 411 t~d~~~I~~~a~~Ll~~~~~ 430 (459)
T 1t94_A 411 VSTAEEIFAIAKELLKTEID 430 (459)
T ss_dssp CCC--CHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 69999999999999999874
No 28
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=34.46 E-value=9.5 Score=15.89 Aligned_cols=48 Identities=8% Similarity=0.135 Sum_probs=28.1
Q ss_pred CHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0000000111110000001334303650168610123444589999986
Q gi|254781079|r 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 (266)
Q Consensus 156 ~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~ 204 (266)
..+|..|.+.--+..+++=++||+=+++.+ .+.+++..+.+++++.++
T Consensus 28 ~~va~~ID~~~~~e~I~GTIAGdDTvlIi~-~~~~~a~~l~~~i~~ll~ 75 (78)
T 1xxa_A 28 QLIARLLDSLGKAEGILGTIAGDDTIFTTP-ANGFTVKDLYEAILELFD 75 (78)
T ss_dssp HHHHHHHTTTTTTTTEEEEEECSSEEEEEE-CTTCCHHHHHHHHHTTC-
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCEEEEEE-CCHHHHHHHHHHHHHHHH
T ss_conf 999999974899887899972699999997-887899999999999985
No 29
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=34.35 E-value=17 Score=13.99 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=40.2
Q ss_pred CCCCCCCCCCHHHCCCCCC-----CCCCHHHCCCCCCEEEE-----ECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 8654443110000000111-----11000000133430365-----0168610123444589999986315
Q gi|254781079|r 147 GHPVGDKVIAFLSDQLVVV-----FGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIENSQ 207 (266)
Q Consensus 147 G~~~gD~~L~~va~~l~~~-----~~~~~~~~R~~gdeF~i-----ll~~~~~~~~~~~~~~l~~~l~~~~ 207 (266)
+....++.+..+.+.+... ..-+++-.|..|....+ +-++.+..++..+++++...+.+..
T Consensus 4 D~~~~~e~~~~I~~~i~~~~~~~v~~vh~lr~r~~G~~~~vd~~i~v~~~~sv~eaH~i~~~ve~~l~~~~ 74 (94)
T 3byp_A 4 DEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAF 74 (94)
T ss_dssp --CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 88889999999999999568998678888888998998999999998999989999999999999999658
No 30
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase/DNA complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=33.93 E-value=17 Score=13.94 Aligned_cols=20 Identities=15% Similarity=-0.057 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 98998999999999999999
Q gi|254781079|r 229 HKEPISTIIYRADQALYVAK 248 (266)
Q Consensus 229 ~~~~~~~ll~~Ad~Al~~AK 248 (266)
...+.+.++..|-..+...-
T Consensus 304 ~~~~~~~~~~~a~~ll~~~~ 323 (352)
T 1jx4_A 304 HGISKETAYSESVKLLQKIL 323 (352)
T ss_dssp SCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 98896999999999999887
No 31
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C*
Probab=26.37 E-value=22 Score=13.04 Aligned_cols=60 Identities=20% Similarity=0.129 Sum_probs=35.1
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC----------CCCHHHCCCCCCEEEEECCCCC
Q ss_conf 9725755442210001146886544431100000001111----------1000000133430365016861
Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF----------GTPMFVGRLGGEEFAAAALGSS 188 (266)
Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~----------~~~~~~~R~~gdeF~ill~~~~ 188 (266)
.+-++.+.|+.++..++ .-|...+ +.+..+...+...+ .++..++|+|.|||.++.++..
T Consensus 26 ~~~~v~l~d~s~~~~~~-l~g~~a~-~~~~~~~~~~~~~lp~~~~~~~~~~~d~~v~~l~pde~liv~~~~~ 95 (206)
T 1x31_C 26 GERAVTLREVAFTTQLG-LRAVPGS-TGHAALAAATGVGLPAAVGEVAGDVSGTAVLWLGPDEFLLAAEENP 95 (206)
T ss_dssp STTCBEEEECCSCEEEE-EECCTTS-HHHHHHHHHSSSCCCCSTTBEEECTTSCEEEEEETTEEEEEESSCT
T ss_pred CCCCEEEEECCCCEEEE-EECCCHH-HHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEECCCEEEEEECCCH
T ss_conf 57868999878976999-9879869-9999999855987797677089735984999978998999968624
No 32
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A*
Probab=24.78 E-value=24 Score=12.83 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 44458999998
Q gi|254781079|r 193 AILANDLRKII 203 (266)
Q Consensus 193 ~~~~~~l~~~l 203 (266)
..++++|+..+
T Consensus 183 ~~~a~~ir~~I 193 (434)
T 2aq4_A 183 ARLCEEIRQEI 193 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 33
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3h4d_A* 3h4b_A* 2alz_A* 3h40_A* 1t3n_A* 1zet_A*
Probab=24.20 E-value=20 Score=13.48 Aligned_cols=10 Identities=20% Similarity=0.122 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q ss_conf 4458999998
Q gi|254781079|r 194 ILANDLRKII 203 (266)
Q Consensus 194 ~~~~~l~~~l 203 (266)
.+++++...+
T Consensus 323 ~l~~~l~~rl 332 (420)
T 3osn_A 323 ELLASLLNRV 332 (420)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 34
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=22.60 E-value=26 Score=12.53 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=36.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC--------C--CCHHHCCCCCCEEEEECCCCC
Q ss_conf 89725755442210001146886544431100000001111--------1--000000133430365016861
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--------G--TPMFVGRLGGEEFAAAALGSS 188 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~--------~--~~~~~~R~~gdeF~ill~~~~ 188 (266)
.....+-+.|+.++..++=+ |.. +++++..+...+...+ . ++-.++|+|.|||.++.++..
T Consensus 27 a~~g~v~l~e~s~~~~i~lr-g~~-~~~~~~~~~~~~g~~lP~~~n~~~~~~dd~~v~~l~~de~ll~~~~~~ 97 (210)
T 2gag_C 27 SVAGRVELREIAFTTQISLR-CAP-GTQAHAALAAATGAGLPAKVGEVAGEAQGTAVLWLAPDEFLATSAENT 97 (210)
T ss_dssp CBTTTBEEEECCSCEEEEEE-CCT-TSHHHHHHHHHHSSCCCCSTTBCEECTTSCEEEEEETTEEEEEESSCT
T ss_pred CCCCCEEEEECCCCEEEEEE-CCC-CHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEECCCEEEEEECCCH
T ss_conf 55685479957986499998-378-189999999850866688777267547987999948986999947646
No 35
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=22.36 E-value=26 Score=12.50 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=18.2
Q ss_pred EEEEEEEE----EEECCCC-CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999----9877998-9989999999999999997099
Q gi|254781079|r 216 IHITISAG----IAERCHK-EPISTIIYRADQALYVAKKSGR 252 (266)
Q Consensus 216 ~~~t~s~G----ia~~~~~-~~~~~ll~~Ad~Al~~AK~~gk 252 (266)
+.+|+++| +.+..+| .+...|..+|-..-+.++..+.
T Consensus 3 MkvtV~~g~~~ivVPC~dg~~tV~wL~~~A~~RY~k~~~k~~ 44 (85)
T 2ns5_A 3 FKVTVCFGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDP 44 (85)
T ss_dssp EEEEEEETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCT
T ss_pred EEEEEEECCEEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCC
T ss_conf 089999898899987079982799999999999998668898
No 36
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: d.58.48.1
Probab=20.43 E-value=29 Score=12.22 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=33.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 03650168610123444589999986315406799568999999998779989989999999999999997099689994
Q gi|254781079|r 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 (266)
Q Consensus 179 eF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~ 258 (266)
||.++--++.......+..+..+.+++. |....++. .|-. -+++++++++.-...+-...-+.|-+|+...
T Consensus 5 ei~i~Pig~~~~svs~yVa~~i~~i~~s------gl~y~~~p-mgT~--IEge~~dev~~~ik~~~e~~~~~G~~RV~t~ 75 (99)
T 1lxn_A 5 ELTVIPLGTCSTSLSSYVAAAVEALKKL------NVRYEISG-MGTL--LEAEDLDELMEAVKAAHEAVLQAGSDRVYTT 75 (99)
T ss_dssp EEEEEESSCSSSCCHHHHHHHHHHHTTS------SCEEEEET-TEEE--EEESSHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHC------CCCEEECC-CCCE--EECCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999757999975899999999999975------99837468-8417--9779799999999999999997699869999
Q ss_pred CHHHC
Q ss_conf 02100
Q gi|254781079|r 259 SDIEN 263 (266)
Q Consensus 259 ~~~~~ 263 (266)
=-+++
T Consensus 76 ikID~ 80 (99)
T 1lxn_A 76 LKIDD 80 (99)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99770
No 37
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=20.17 E-value=24 Score=12.82 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=28.7
Q ss_pred CCCCCCCCC--CCCCCHHHCCCCCCCCCCH-HHCCCCCCEEEEECCC-CCHHHHHHHHHHH
Q ss_conf 146886544--4311000000011111000-0001334303650168-6101234445899
Q gi|254781079|r 143 NDNFGHPVG--DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALG-SSEQEAAILANDL 199 (266)
Q Consensus 143 Nd~~G~~~g--D~~L~~va~~l~~~~~~~~-~~~R~~gdeF~ill~~-~~~~~~~~~~~~l 199 (266)
+|.||-..- =+++.+|.+.+++.++++- +..|++++|+. ++ .+.++...+++.+
T Consensus 180 ~D~yGGs~enR~Rf~~eii~~ir~~~g~~~~v~~Ris~~~~~---~~~~~~~~~~~~~~~l 237 (671)
T 1ps9_A 180 SDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLV---EDGGTFAETVELAQAI 237 (671)
T ss_dssp CSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCS---TTCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC---CCCCCHHHHHHHHHHH
T ss_conf 776676877776889999999987619985388842641125---7899889999999999
Done!