RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62] (266 letters) >gnl|CDD|128563 smart00267, GGDEF, diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria. Length = 163 Score = 125 bits (316), Expect = 1e-29 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 10/165 (6%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N F + +++ D+D FK IND +GH VGD++ Sbjct: 1 RLAFRDPLTGLPNRRYFEEELEQELQRAQRQGSPFALLLIDLDNFKDINDTYGHAVGDEL 60 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L + RLGG+EFA +S +EA LA + + + + I G Sbjct: 61 LQEVAQRLSSCLRPGDLLARLGGDEFALLLPETSLEEAIALAERILQQLR--EPIIIHGI 118 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +++TIS G+A E ++ RAD ALY AKK+GRN+V + Sbjct: 119 PLYLTISIGVAAYPNPGEDAEDLLKRADTALYQAKKAGRNQVAVY 163 >gnl|CDD|161790 TIGR00254, GGDEF, diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein. Length = 165 Score = 122 bits (308), Expect = 9e-29 Identities = 59/164 (35%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + D L+GL N L S + S++ DID FK+IND GH VGD+V+ Sbjct: 1 QAVRDPLTGLYNRRYLEEMLDSELKRARRFQRSFSVLMIDIDNFKKINDTLGHDVGDEVL 60 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L VGR GGEEF G+ ++A A LR I + I ++ + Sbjct: 61 REVARILQSSVRGSDVVGRYGGEEFVVILPGTPLEDALSKAERLRDAINSKPIEVAGSET 120 Query: 216 IHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 + +T+S G+A C+ T ++ RAD+ALY AKK+GRNRVV Sbjct: 121 LTVTVSIGVA--CYPGHGLTLEELLKRADEALYQAKKAGRNRVV 162 >gnl|CDD|181966 PRK09581, pleD, response regulator PleD; Reviewed. Length = 457 Score = 118 bits (298), Expect = 2e-27 Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 11/164 (6%) Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ D L+GL N F L + LS++ DID+FK++ND +GH GD+V+ Sbjct: 291 MAVTDGLTGLHNRRYFDMHLKNLIERANERGKPLSLMMIDIDHFKKVNDTYGHDAGDEVL 350 Query: 156 AFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +L + GT + + R GGEEF + ++A +A +R+ I IS G Sbjct: 351 REFAKRLRNNIRGTDL-IARYGGEEFVVVMPDTDIEDAIAVAERIRRKIAEEPFIISDGK 409 Query: 215 S-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++T+S G+AE + I +I RAD+ALY AK +GRNRVV Sbjct: 410 ERLNVTVSIGVAELRPSGDTIEALIKRADKALYEAKNTGRNRVV 453 >gnl|CDD|182133 PRK09894, PRK09894, diguanylate cyclase; Provisional. Length = 296 Score = 110 bits (277), Expect = 4e-25 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 10/165 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 S +D L+GL S + L + DID FK +ND +GH +GD V+ Sbjct: 128 RSNMDVLTGLPGRRVLDESFDHQLRNREPQNLYLALLDIDRFKLVNDTYGHLIGDVVLRT 187 Query: 158 LSDQLVVVFGTPMF--VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L+ L T + V R GGEEF ++++EA +R++I N I S G Sbjct: 188 LATYLAS--WTRDYETVYRYGGEEFIICLKAATDEEACRAGERIRQLIANHAITHSDG-R 244 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I+IT + G++ +E + +I RAD+A+Y K++GRNRV+ + Sbjct: 245 INITATFGVSRAFPEETLDVVIGRADRAMYEGKQTGRNRVMFIDE 289 >gnl|CDD|185324 PRK15426, PRK15426, putative diguanylate cyclase YedQ; Provisional. Length = 570 Score = 108 bits (273), Expect = 1e-24 Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 22/207 (10%) Query: 75 SITISLLLG--------YISGSILKELFISY----NRISQLSRIDCLSGLLNHSAFISSL 122 SI+I+L L IS +++ + + + + + D L+ L N A Sbjct: 357 SISIALTLLWALFTAMLLISWYVIRRMVSNMFVLQSSLQWQAWHDPLTRLYNRGALFEKA 416 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 + ++ S++ D+D+FK IND FGH GD+V++ + + GR+ Sbjct: 417 RALAKRCQRDQQPFSVIQLDLDHFKSINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRV 476 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS- 234 GGEEF G+S EAA +A +R I +I ++ +I I+ S G++ Sbjct: 477 GGEEFCVVLPGASLAEAAQVAERIRLRINEKEILVAKSTTIRISASLGVSSAEEDGDYDF 536 Query: 235 -TIIYRADQALYVAKKSGRNRVVCFSD 260 + AD+ LY+AK++GRNR VC SD Sbjct: 537 EQLQSLADRRLYLAKQAGRNR-VCASD 562 >gnl|CDD|182329 PRK10245, adrA, diguanylate cyclase AdrA; Provisional. Length = 366 Score = 90.3 bits (224), Expect = 5e-19 Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 25/201 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL +I I LL ++S +L R+ +S D ++G+ N + + L + Sbjct: 171 LSLPVIVI-YPLLFAWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETLLRNEFDN 229 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 ++ +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 CRRHHRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 290 VIMSGTP-AESAITA--MSRVHEGLNTLRLPNAPQVTLRISVGVA------PLNPQMSHY 340 Query: 239 R-----ADQALYVAKKSGRNR 254 R AD ALY AK +GRNR Sbjct: 341 REWLKSADLALYKAKNAGRNR 361 >gnl|CDD|182215 PRK10060, PRK10060, RNase II stability modulator; Provisional. Length = 663 Score = 79.3 bits (196), Expect = 8e-16 Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 22/174 (12%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D ++GL N +A I++ N ++ IV+ D+D FK++ND +GH G Sbjct: 232 RLRILANTDSITGLPNRNAIQELIDHAINAAD--NNQVGIVYLDLDNFKKVNDAYGHMFG 289 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQ 207 D+++ +S ++ + RLGG+EF + + + E A+ + LR Sbjct: 290 DQLLQDVSLAILSCLEEDQTLARLGGDEFLVLASHTSQAALEAMASRILTRLRLPFRIGL 349 Query: 208 INISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I + +G SI GIA H + ++I AD A+Y AK+ GR + FS Sbjct: 350 IEVYTGCSI------GIA-LAPEHGDDSESLIRSADTAMYTAKEGGRGQFCVFS 396 >gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional. Length = 1092 Score = 66.6 bits (163), Expect = 6e-12 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 25/165 (15%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N ++F + ++ S +++ ++VF D+D FK +ND+ GH GD ++ L+ Sbjct: 668 DALTHLANRASFEKQLRRLLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELA 727 Query: 160 DQLVVVFGTPMFVGRLGGEEFAA----AALGSSEQEA-----AILANDLRKIIENSQINI 210 ++ + + + RLGG+EF + S+ A AI ND E + Sbjct: 728 SLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAI--NDYHFPWEGRVYRV 785 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G S IT+ I H S ++ +AD A Y AK +GR RV Sbjct: 786 --GASAGITL---IDANNH--QASEVMSQADIACYAAKNAGRGRV 823 >gnl|CDD|183097 PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional. Length = 799 Score = 66.3 bits (162), Expect = 7e-12 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152 S I QL + D L+GL N + + L ++ +S V + +D+F+ + D+ G+ D Sbjct: 368 SRQHIEQLIQFDPLTGLPNRNNLHNYLDDLVDKAVSPVVYLIGVDHFQDVIDSLGYAWAD 427 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + + ++ ++ R+ G +F +L + +A++LR ++ + I I Sbjct: 428 QALLEVVNRFREKLKPDQYLCRIEGTQFVLVSLENDVSNITQIADELRNVV-SKPIMI-D 485 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S GI+ K ++ A A+ +K+G N FS Sbjct: 486 DKPFPLTLSIGISYDVGKNR-DYLLSTAHNAMDYIRKNGGNGWQFFS 531 >gnl|CDD|182171 PRK09966, PRK09966, putative inner membrane diguanylate cyclase; Provisional. Length = 407 Score = 64.3 bits (156), Expect = 3e-11 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%) Query: 101 SQLSRI---DCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +QL R D L+GL N +AF S + + +++F D D FK IND +GH G Sbjct: 242 AQLLRTALHDPLTGLANRAAFRSGINTLMNNSDARKTSALLFLDGDNFKYINDTWGHATG 301 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210 D+V+ ++ +L G RLGG+EFA SE E + + L +I N ++ Sbjct: 302 DRVLIEIAKRLAEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIF-NLPFDL 360 Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +G +T+S G A E E + + AD +Y AK ++V Sbjct: 361 HNGHQTTMTLSIGYAMTIEHASAEKLQEL---ADHNMYQAKHQRAEKLV 406 >gnl|CDD|184143 PRK13561, PRK13561, putative diguanylate cyclase; Provisional. Length = 651 Score = 31.2 bits (71), Expect = 0.25 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 170 MFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERC 228 M + ++ G +FA A G E AI L + II N ++ I + + S GIA Sbjct: 300 MVLAQISGYDFAIIANGVKEPWHAITLGQQVLTII-NERLPIQRIQ-LRPSCSIGIAMFY 357 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + RA A + A++ G+N++ F Sbjct: 358 GDLTAEQLYSRAISAAFTARRKGKNQIQFF 387 >gnl|CDD|162930 TIGR02577, cas_TM1794_Crm2, CRISPR-associated protein, Crm2 family. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2. Length = 482 Score = 30.9 bits (70), Expect = 0.32 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 A +LRK S + S G T+SAG+ HKEP+ + A + L AK+ Sbjct: 430 AKELRKEFRES-LEKSLGGERGPTMSAGLLIVHHKEPLYDALELARRLLKRAKE 482 >gnl|CDD|185512 PTZ00202, PTZ00202, tuzin; Provisional. Length = 550 Score = 28.6 bits (64), Expect = 1.6 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%) Query: 221 SAGIAERCHKEPISTIIY----RADQALYVAKKS 250 SAG+A R +E + I+Y RAD+ LY+ + S Sbjct: 121 SAGVARRADQESTACILYHRGWRADR-LYLLEAS 153 >gnl|CDD|183770 PRK12821, PRK12821, aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional. Length = 477 Score = 28.7 bits (64), Expect = 1.7 Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 9/93 (9%) Query: 28 MIYFSIFFSIFIATVIFIANIFLF----YIGLTPFYGLEYILVENLSLVI-ISITISLLL 82 IYF++ F + + ++F +FLF Y TP G+ I + ++++I ++++I L+L Sbjct: 18 FIYFAVVFGLILVYLLFKNLLFLFFFKRYPKNTPKIGV--INITTIAMIIAVAVSIVLVL 75 Query: 83 GYISGSILKELFISY--NRISQLSRIDCLSGLL 113 ++G + LF Y R++ + +SGLL Sbjct: 76 MALAGGLAAALFRGYPGFRVTLELILVKISGLL 108 >gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated. Length = 286 Score = 28.4 bits (64), Expect = 1.7 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 AGIAE C + + +++ + L A GRNR+ Sbjct: 18 AGIAEVCARAGVDVLVFETTEELATA---GRNRIE 49 >gnl|CDD|182075 PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed. Length = 120 Score = 27.9 bits (62), Expect = 2.6 Identities = 7/27 (25%), Positives = 15/27 (55%) Query: 201 KIIENSQINISSGPSIHITISAGIAER 227 +II+N+ ++I + I I + +R Sbjct: 40 RIIKNAMLDIGLAMPVKIRIECHMPDR 66 >gnl|CDD|147844 pfam05913, DUF871, Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown. Length = 357 Score = 27.9 bits (63), Expect = 2.8 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 85 ISGSILKELFISYNRISQLSRI 106 IS S+LK+L ISY+ +S L + Sbjct: 66 ISPSVLKQLGISYDDLSFLKEL 87 >gnl|CDD|150914 pfam10318, 7TM_GPCR_Srh, Serpentine type 7TM GPCR chemoreceptor Srh. Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srh is part of the Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. Length = 302 Score = 27.5 bits (62), Expect = 3.8 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Query: 8 FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYIL 65 FL+I+ + S S T + ++ I I + I L Y + +G Sbjct: 206 FLTIYYLFKSLKSSLSKKTRKLQKKFLIALIIQVSIPLIVILIPLIYFLYSIIFGYYNQA 265 Query: 66 VENLSLVIISI-----TISLLL 82 + NL+ +IIS+ TI++LL Sbjct: 266 LNNLAFIIISLHGLLSTIAMLL 287 >gnl|CDD|150924 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor Srx. Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srx is part of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. Length = 275 Score = 27.2 bits (61), Expect = 4.4 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 13/91 (14%) Query: 4 SLKDFLSIWLCHE-KNLESFSPHTFMIYFSIFFSIFIATVIFIA---------NIFLFYI 53 SL F +++ + K + S +I F +I I+T+ + + Sbjct: 89 SLNRFCAVFFPFKYKKIFSIKNTKIIITFIWIIAIIISTLFYFPLGCHFYYSPETLTWSF 148 Query: 54 GLTPF---YGLEYILVENLSLVIISITISLL 81 P ++NL LVII+ I+++ Sbjct: 149 DEDPPCAEINWYGDFLKNLVLVIITNIINVI 179 >gnl|CDD|161812 TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. Length = 374 Score = 27.1 bits (60), Expect = 5.2 Identities = 8/39 (20%), Positives = 17/39 (43%) Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 P++ G L +EF L +E++ + K++ Sbjct: 264 LAGPLYAGPLHDKEFIEEVLRIAEEKEYGTRKRVLKMLS 302 >gnl|CDD|178096 PLN02478, PLN02478, alternative oxidase. Length = 328 Score = 26.8 bits (59), Expect = 5.7 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 VF F+G L +FA +G E+EA + K ++ +I P+I I Sbjct: 223 VFFNAYFLGYLISPKFAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLP 282 Query: 225 AERCHKEPISTIIYRADQA 243 A+ ++ ++ + RAD+A Sbjct: 283 ADATLRDVVTVV--RADEA 299 >gnl|CDD|178437 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase. Length = 722 Score = 26.7 bits (59), Expect = 6.2 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 1 MTRSLKDFLSIWLCHEKNL--------ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY 52 M ++++W+ NL E + HT Y+ + F+++ I +A I L Y Sbjct: 14 MILIFAGWIALWILKPTNLWTRKWKQAEDSARHTVFGYYGLNFAVYTFPPIALAIIGLVY 73 Query: 53 IGLTP 57 + L Sbjct: 74 LSLLS 78 >gnl|CDD|150652 pfam10003, DUF2244, Integral membrane protein (DUF2244). This domain, found in various bacterial hypothetical and putative membrane proteins, has no known function. Length = 140 Score = 26.7 bits (60), Expect = 6.7 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 18/83 (21%) Query: 21 SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG---LTPFYGLEYILVENLSLVIISIT 77 S SP F+ F +A V + + G + PF GLE ++++ Sbjct: 6 SLSPRGFLA-----FMGALAAVSLLIALAFLGTGAWPVLPFAGLE----------LLALW 50 Query: 78 ISLLLGYISGSILKELFISYNRI 100 ++ Y + + ++ + Sbjct: 51 LAFRRSYRHARDREVITLTPEEL 73 >gnl|CDD|162012 TIGR00728, OPT_sfam, oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches. Length = 654 Score = 26.6 bits (59), Expect = 6.9 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 29 IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87 Y S+ F ++ + + F I P++G+ L+ L I ++ + +SG Sbjct: 380 WYLSLLLVSFGLGIVVV--EYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGL 437 Query: 88 SILKELFISY 97 +I+ EL I Y Sbjct: 438 NIITELIIGY 447 >gnl|CDD|129428 TIGR00328, flhB, flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. Length = 347 Score = 26.5 bits (59), Expect = 7.0 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 21/109 (19%) Query: 8 FLSIWLCHE---KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64 LS+ + L S ++ IF +I + L P Sbjct: 36 VLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIREVLLLLLPI------ 89 Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRIS-QLSRIDCLSGL 112 + L++G +S + + + S+I+ + GL Sbjct: 90 -----------FVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGL 127 >gnl|CDD|149135 pfam07895, DUF1673, Protein of unknown function (DUF1673). This family contains hypothetical proteins of unknown function expressed by two archaeal species. Length = 204 Score = 26.5 bits (59), Expect = 7.0 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 47 NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL--KELFISYNRISQLS 104 + L I LT Y LV + + + ++ L + + K+ I Y+ +++ Sbjct: 58 RLLLASIFLTLA----YFLVISQLGINLLFLLAGLFLSLLLYLFTWKKQMIRYDALAKKP 113 Query: 105 RIDC 108 I Sbjct: 114 VIRY 117 >gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase. Length = 481 Score = 26.5 bits (58), Expect = 7.5 Identities = 17/45 (37%), Positives = 25/45 (55%) Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VV G PM L E+ AAL S E A+ ++D +++I S+I Sbjct: 373 VVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKI 417 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.326 0.142 0.409 Gapped Lambda K H 0.267 0.0726 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,353,864 Number of extensions: 290568 Number of successful extensions: 1258 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1206 Number of HSP's successfully gapped: 155 Length of query: 266 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 174 Effective length of database: 4,006,537 Effective search space: 697137438 Effective search space used: 697137438 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (25.4 bits)