RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781079|ref|YP_003065492.1| diguanylate cyclase
[Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)



>gnl|CDD|128563 smart00267, GGDEF, diguanylate cyclase.  Diguanylate cyclase,
           present in a variety of bacteria.
          Length = 163

 Score =  125 bits (316), Expect = 1e-29
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 10/165 (6%)

Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
           +L+  D L+GL N   F       +          +++  D+D FK IND +GH VGD++
Sbjct: 1   RLAFRDPLTGLPNRRYFEEELEQELQRAQRQGSPFALLLIDLDNFKDINDTYGHAVGDEL 60

Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
           +  ++ +L         + RLGG+EFA     +S +EA  LA  + + +   +  I  G 
Sbjct: 61  LQEVAQRLSSCLRPGDLLARLGGDEFALLLPETSLEEAIALAERILQQLR--EPIIIHGI 118

Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258
            +++TIS G+A      E    ++ RAD ALY AKK+GRN+V  +
Sbjct: 119 PLYLTISIGVAAYPNPGEDAEDLLKRADTALYQAKKAGRNQVAVY 163


>gnl|CDD|161790 TIGR00254, GGDEF, diguanylate cyclase (GGDEF) domain.  The GGDEF
           domain is named for the motif GG[DE]EF shared by many
           proteins carrying the domain. There is evidence that the
           domain has diguanylate cyclase activity. Several
           proteins carrying this domain also carry domains with
           functions relating to environmental sensing. These
           include PleD, a response regulator protein involved in
           the swarmer-to-stalked cell transition in Caulobacter
           crescentus, and FixL, a heme-containing oxygen sensor
           protein.
          Length = 165

 Score =  122 bits (308), Expect = 9e-29
 Identities = 59/164 (35%), Positives = 85/164 (51%), Gaps = 12/164 (7%)

Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
            +  D L+GL N       L S       +    S++  DID FK+IND  GH VGD+V+
Sbjct: 1   QAVRDPLTGLYNRRYLEEMLDSELKRARRFQRSFSVLMIDIDNFKKINDTLGHDVGDEVL 60

Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
             ++  L         VGR GGEEF     G+  ++A   A  LR  I +  I ++   +
Sbjct: 61  REVARILQSSVRGSDVVGRYGGEEFVVILPGTPLEDALSKAERLRDAINSKPIEVAGSET 120

Query: 216 IHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256
           + +T+S G+A  C+     T   ++ RAD+ALY AKK+GRNRVV
Sbjct: 121 LTVTVSIGVA--CYPGHGLTLEELLKRADEALYQAKKAGRNRVV 162


>gnl|CDD|181966 PRK09581, pleD, response regulator PleD; Reviewed.
          Length = 457

 Score =  118 bits (298), Expect = 2e-27
 Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 11/164 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155
           ++  D L+GL N   F   L           + LS++  DID+FK++ND +GH  GD+V+
Sbjct: 291 MAVTDGLTGLHNRRYFDMHLKNLIERANERGKPLSLMMIDIDHFKKVNDTYGHDAGDEVL 350

Query: 156 AFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214
              + +L   + GT + + R GGEEF      +  ++A  +A  +R+ I      IS G 
Sbjct: 351 REFAKRLRNNIRGTDL-IARYGGEEFVVVMPDTDIEDAIAVAERIRRKIAEEPFIISDGK 409

Query: 215 S-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256
             +++T+S G+AE     + I  +I RAD+ALY AK +GRNRVV
Sbjct: 410 ERLNVTVSIGVAELRPSGDTIEALIKRADKALYEAKNTGRNRVV 453


>gnl|CDD|182133 PRK09894, PRK09894, diguanylate cyclase; Provisional.
          Length = 296

 Score =  110 bits (277), Expect = 4e-25
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 103 LSRIDCLSGLLNHSAFISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157
            S +D L+GL        S          + L +   DID FK +ND +GH +GD V+  
Sbjct: 128 RSNMDVLTGLPGRRVLDESFDHQLRNREPQNLYLALLDIDRFKLVNDTYGHLIGDVVLRT 187

Query: 158 LSDQLVVVFGTPMF--VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215
           L+  L     T  +  V R GGEEF      ++++EA      +R++I N  I  S G  
Sbjct: 188 LATYLAS--WTRDYETVYRYGGEEFIICLKAATDEEACRAGERIRQLIANHAITHSDG-R 244

Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
           I+IT + G++    +E +  +I RAD+A+Y  K++GRNRV+   +
Sbjct: 245 INITATFGVSRAFPEETLDVVIGRADRAMYEGKQTGRNRVMFIDE 289


>gnl|CDD|185324 PRK15426, PRK15426, putative diguanylate cyclase YedQ; Provisional.
          Length = 570

 Score =  108 bits (273), Expect = 1e-24
 Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 22/207 (10%)

Query: 75  SITISLLLG--------YISGSILKELFISY----NRISQLSRIDCLSGLLNHSAFISSL 122
           SI+I+L L          IS  +++ +  +     + +   +  D L+ L N  A     
Sbjct: 357 SISIALTLLWALFTAMLLISWYVIRRMVSNMFVLQSSLQWQAWHDPLTRLYNRGALFEKA 416

Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175
            +  ++        S++  D+D+FK IND FGH  GD+V++  +  +          GR+
Sbjct: 417 RALAKRCQRDQQPFSVIQLDLDHFKSINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRV 476

Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS- 234
           GGEEF     G+S  EAA +A  +R  I   +I ++   +I I+ S G++          
Sbjct: 477 GGEEFCVVLPGASLAEAAQVAERIRLRINEKEILVAKSTTIRISASLGVSSAEEDGDYDF 536

Query: 235 -TIIYRADQALYVAKKSGRNRVVCFSD 260
             +   AD+ LY+AK++GRNR VC SD
Sbjct: 537 EQLQSLADRRLYLAKQAGRNR-VCASD 562


>gnl|CDD|182329 PRK10245, adrA, diguanylate cyclase AdrA; Provisional.
          Length = 366

 Score = 90.3 bits (224), Expect = 5e-19
 Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 25/201 (12%)

Query: 69  LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124
           LSL +I I   LL  ++S     +L     R+  +S  D ++G+ N   + + L +    
Sbjct: 171 LSLPVIVI-YPLLFAWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETLLRNEFDN 229

Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181
              ++   +++  DID+FK IND +GH VGD+ I  L+ QL +       +GR GG+EFA
Sbjct: 230 CRRHHRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289

Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238
               G+   E+AI A  + ++ E  + + + + P + + IS G+A      P++  +  Y
Sbjct: 290 VIMSGTP-AESAITA--MSRVHEGLNTLRLPNAPQVTLRISVGVA------PLNPQMSHY 340

Query: 239 R-----ADQALYVAKKSGRNR 254
           R     AD ALY AK +GRNR
Sbjct: 341 REWLKSADLALYKAKNAGRNR 361


>gnl|CDD|182215 PRK10060, PRK10060, RNase II stability modulator; Provisional.
          Length = 663

 Score = 79.3 bits (196), Expect = 8e-16
 Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 22/174 (12%)

Query: 99  RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           R+  L+  D ++GL N +A        I++    N ++ IV+ D+D FK++ND +GH  G
Sbjct: 232 RLRILANTDSITGLPNRNAIQELIDHAINAAD--NNQVGIVYLDLDNFKKVNDAYGHMFG 289

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQ 207
           D+++  +S  ++        + RLGG+EF    +  +  + E  A+ +   LR       
Sbjct: 290 DQLLQDVSLAILSCLEEDQTLARLGGDEFLVLASHTSQAALEAMASRILTRLRLPFRIGL 349

Query: 208 INISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           I + +G SI      GIA     H +   ++I  AD A+Y AK+ GR +   FS
Sbjct: 350 IEVYTGCSI------GIA-LAPEHGDDSESLIRSADTAMYTAKEGGRGQFCVFS 396


>gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional.
          Length = 1092

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 25/165 (15%)

Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
           D L+ L N ++F       + ++ S +++ ++VF D+D FK +ND+ GH  GD ++  L+
Sbjct: 668 DALTHLANRASFEKQLRRLLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELA 727

Query: 160 DQLVVVFGTPMFVGRLGGEEFAA----AALGSSEQEA-----AILANDLRKIIENSQINI 210
             ++ +  +   + RLGG+EF        + S+   A     AI  ND     E     +
Sbjct: 728 SLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAI--NDYHFPWEGRVYRV 785

Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255
             G S  IT+   I    H    S ++ +AD A Y AK +GR RV
Sbjct: 786 --GASAGITL---IDANNH--QASEVMSQADIACYAAKNAGRGRV 823


>gnl|CDD|183097 PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional.
          Length = 799

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 96  SYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152
           S   I QL + D L+GL N +   + L    ++ +S V +   +D+F+ + D+ G+   D
Sbjct: 368 SRQHIEQLIQFDPLTGLPNRNNLHNYLDDLVDKAVSPVVYLIGVDHFQDVIDSLGYAWAD 427

Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212
           + +  + ++         ++ R+ G +F   +L +       +A++LR ++ +  I I  
Sbjct: 428 QALLEVVNRFREKLKPDQYLCRIEGTQFVLVSLENDVSNITQIADELRNVV-SKPIMI-D 485

Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
                +T+S GI+    K     ++  A  A+   +K+G N    FS
Sbjct: 486 DKPFPLTLSIGISYDVGKNR-DYLLSTAHNAMDYIRKNGGNGWQFFS 531


>gnl|CDD|182171 PRK09966, PRK09966, putative inner membrane diguanylate cyclase;
           Provisional.
          Length = 407

 Score = 64.3 bits (156), Expect = 3e-11
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%)

Query: 101 SQLSRI---DCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
           +QL R    D L+GL N +AF S +          +  +++F D D FK IND +GH  G
Sbjct: 242 AQLLRTALHDPLTGLANRAAFRSGINTLMNNSDARKTSALLFLDGDNFKYINDTWGHATG 301

Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210
           D+V+  ++ +L    G      RLGG+EFA       SE E   + + L +I  N   ++
Sbjct: 302 DRVLIEIAKRLAEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIF-NLPFDL 360

Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
            +G    +T+S G A   E    E +  +   AD  +Y AK     ++V
Sbjct: 361 HNGHQTTMTLSIGYAMTIEHASAEKLQEL---ADHNMYQAKHQRAEKLV 406


>gnl|CDD|184143 PRK13561, PRK13561, putative diguanylate cyclase; Provisional.
          Length = 651

 Score = 31.2 bits (71), Expect = 0.25
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 170 MFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERC 228
           M + ++ G +FA  A G  E   AI L   +  II N ++ I     +  + S GIA   
Sbjct: 300 MVLAQISGYDFAIIANGVKEPWHAITLGQQVLTII-NERLPIQRIQ-LRPSCSIGIAMFY 357

Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCF 258
                  +  RA  A + A++ G+N++  F
Sbjct: 358 GDLTAEQLYSRAISAAFTARRKGKNQIQFF 387


>gnl|CDD|162930 TIGR02577, cas_TM1794_Crm2, CRISPR-associated protein, Crm2 family.
            This model represent a Crm2 family of the
           CRISPR-associated RAMP module, a set of six genes
           recurring found together in prokaryotic genomes. This
           gene cluster is found only in species with CRISPR
           repeats, usually near the repeats themselves. Because
           most of the six (but not this family) contain RAMP
           domains, and because its appearance in a genome appears
           to depend on other CRISPR-associated Cas genes, the set
           is designated the CRISPR RAMP module. This protein,
           typified by TM1794 from Thermotoga maritima, is
           designated Crm2, for CRISPR RAMP Module protein 2.
          Length = 482

 Score = 30.9 bits (70), Expect = 0.32
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249
           A +LRK    S +  S G     T+SAG+    HKEP+   +  A + L  AK+
Sbjct: 430 AKELRKEFRES-LEKSLGGERGPTMSAGLLIVHHKEPLYDALELARRLLKRAKE 482


>gnl|CDD|185512 PTZ00202, PTZ00202, tuzin; Provisional.
          Length = 550

 Score = 28.6 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%)

Query: 221 SAGIAERCHKEPISTIIY----RADQALYVAKKS 250
           SAG+A R  +E  + I+Y    RAD+ LY+ + S
Sbjct: 121 SAGVARRADQESTACILYHRGWRADR-LYLLEAS 153


>gnl|CDD|183770 PRK12821, PRK12821, aspartyl/glutamyl-tRNA amidotransferase subunit
           C-like protein; Provisional.
          Length = 477

 Score = 28.7 bits (64), Expect = 1.7
 Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 9/93 (9%)

Query: 28  MIYFSIFFSIFIATVIFIANIFLF----YIGLTPFYGLEYILVENLSLVI-ISITISLLL 82
            IYF++ F + +  ++F   +FLF    Y   TP  G+  I +  ++++I ++++I L+L
Sbjct: 18  FIYFAVVFGLILVYLLFKNLLFLFFFKRYPKNTPKIGV--INITTIAMIIAVAVSIVLVL 75

Query: 83  GYISGSILKELFISY--NRISQLSRIDCLSGLL 113
             ++G +   LF  Y   R++    +  +SGLL
Sbjct: 76  MALAGGLAAALFRGYPGFRVTLELILVKISGLL 108


>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
          Length = 286

 Score = 28.4 bits (64), Expect = 1.7
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256
           AGIAE C +  +  +++   + L  A   GRNR+ 
Sbjct: 18  AGIAEVCARAGVDVLVFETTEELATA---GRNRIE 49


>gnl|CDD|182075 PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.
          Length = 120

 Score = 27.9 bits (62), Expect = 2.6
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 201 KIIENSQINISSGPSIHITISAGIAER 227
           +II+N+ ++I     + I I   + +R
Sbjct: 40  RIIKNAMLDIGLAMPVKIRIECHMPDR 66


>gnl|CDD|147844 pfam05913, DUF871, Bacterial protein of unknown function (DUF871). 
           This family consists of several conserved hypothetical
           proteins from bacteria and archaea. The function of this
           family is unknown.
          Length = 357

 Score = 27.9 bits (63), Expect = 2.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 85  ISGSILKELFISYNRISQLSRI 106
           IS S+LK+L ISY+ +S L  +
Sbjct: 66  ISPSVLKQLGISYDDLSFLKEL 87


>gnl|CDD|150914 pfam10318, 7TM_GPCR_Srh, Serpentine type 7TM GPCR chemoreceptor
           Srh.  Chemoreception is mediated in Caenorhabditis
           elegans by members of the seven-transmembrane
           G-protein-coupled receptor class (7TM GPCRs) of proteins
           which are of the serpentine type. Srh is part of the Str
           superfamily of chemoreceptors. Chemoperception is one of
           the central senses of soil nematodes like C. elegans
           which are otherwise 'blind' and 'deaf'.
          Length = 302

 Score = 27.5 bits (62), Expect = 3.8
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 8   FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYIL 65
           FL+I+   +    S S  T  +      ++ I   I +  I   L Y   +  +G     
Sbjct: 206 FLTIYYLFKSLKSSLSKKTRKLQKKFLIALIIQVSIPLIVILIPLIYFLYSIIFGYYNQA 265

Query: 66  VENLSLVIISI-----TISLLL 82
           + NL+ +IIS+     TI++LL
Sbjct: 266 LNNLAFIIISLHGLLSTIAMLL 287


>gnl|CDD|150924 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
           Srx.  Chemoreception is mediated in Caenorhabditis
           elegans by members of the seven-transmembrane
           G-protein-coupled receptor class (7TM GPCRs) of proteins
           which are of the serpentine type. Srx is part of the Srg
           superfamily of chemoreceptors. Chemoperception is one of
           the central senses of soil nematodes like C. elegans
           which are otherwise 'blind' and 'deaf'.
          Length = 275

 Score = 27.2 bits (61), Expect = 4.4
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 4   SLKDFLSIWLCHE-KNLESFSPHTFMIYFSIFFSIFIATVIFIA---------NIFLFYI 53
           SL  F +++   + K + S      +I F    +I I+T+ +               +  
Sbjct: 89  SLNRFCAVFFPFKYKKIFSIKNTKIIITFIWIIAIIISTLFYFPLGCHFYYSPETLTWSF 148

Query: 54  GLTPF---YGLEYILVENLSLVIISITISLL 81
              P           ++NL LVII+  I+++
Sbjct: 149 DEDPPCAEINWYGDFLKNLVLVIITNIINVI 179


>gnl|CDD|161812 TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltransferase.  This
           enzyme is responsible for two methylations of a
           characteristic guanine of most tRNA molecules. The
           activity has been demonstrated for eukaryotic and
           archaeal proteins, which are active when expressed in E.
           coli, a species that lacks this enzyme. At least one
           Eubacterium, Aquifex aeolicus, has an ortholog, as do
           all completed archaeal genomes.
          Length = 374

 Score = 27.1 bits (60), Expect = 5.2
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
              P++ G L  +EF    L  +E++       + K++ 
Sbjct: 264 LAGPLYAGPLHDKEFIEEVLRIAEEKEYGTRKRVLKMLS 302


>gnl|CDD|178096 PLN02478, PLN02478, alternative oxidase.
          Length = 328

 Score = 26.8 bits (59), Expect = 5.7
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224
           VF    F+G L   +FA   +G  E+EA     +  K ++  +I     P+I I      
Sbjct: 223 VFFNAYFLGYLISPKFAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLP 282

Query: 225 AERCHKEPISTIIYRADQA 243
           A+   ++ ++ +  RAD+A
Sbjct: 283 ADATLRDVVTVV--RADEA 299


>gnl|CDD|178437 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase.
          Length = 722

 Score = 26.7 bits (59), Expect = 6.2
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 1  MTRSLKDFLSIWLCHEKNL--------ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFY 52
          M      ++++W+    NL        E  + HT   Y+ + F+++    I +A I L Y
Sbjct: 14 MILIFAGWIALWILKPTNLWTRKWKQAEDSARHTVFGYYGLNFAVYTFPPIALAIIGLVY 73

Query: 53 IGLTP 57
          + L  
Sbjct: 74 LSLLS 78


>gnl|CDD|150652 pfam10003, DUF2244, Integral membrane protein (DUF2244).  This
           domain, found in various bacterial hypothetical and
           putative membrane proteins, has no known function.
          Length = 140

 Score = 26.7 bits (60), Expect = 6.7
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 18/83 (21%)

Query: 21  SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG---LTPFYGLEYILVENLSLVIISIT 77
           S SP  F+      F   +A V  +  +     G   + PF GLE          ++++ 
Sbjct: 6   SLSPRGFLA-----FMGALAAVSLLIALAFLGTGAWPVLPFAGLE----------LLALW 50

Query: 78  ISLLLGYISGSILKELFISYNRI 100
           ++    Y      + + ++   +
Sbjct: 51  LAFRRSYRHARDREVITLTPEEL 73


>gnl|CDD|162012 TIGR00728, OPT_sfam, oligopeptide transporters, OPT superfamily.
           Homology between the two branches of the superfamily is
           seen most easily at the ends of the protein. The central
           regions are poorly conserved within each branch and may
           not be homologous between branches.
          Length = 654

 Score = 26.6 bits (59), Expect = 6.9
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 29  IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87
            Y S+    F   ++ +   + F I   P++G+   L+    L I    ++ +   +SG 
Sbjct: 380 WYLSLLLVSFGLGIVVV--EYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGL 437

Query: 88  SILKELFISY 97
           +I+ EL I Y
Sbjct: 438 NIITELIIGY 447


>gnl|CDD|129428 TIGR00328, flhB, flagellar biosynthetic protein FlhB.  FlhB and its
           functionally equivalent orthologs, from among a larger
           superfamily of proteins involved in type III protein
           export systems, are specifically involved in flagellar
           protein export. The seed members are restricted and the
           trusted cutoff is set high such that the proteins
           gathered by this model play roles specifically related
           to flagellar structures. Full-length homologs scoring
           below the trusted cutoff are involved in peptide export
           but not necessarily in the creation of flagella.
          Length = 347

 Score = 26.5 bits (59), Expect = 7.0
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 21/109 (19%)

Query: 8   FLSIWLCHE---KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
            LS+    +     L            S   ++     IF  +I    + L P       
Sbjct: 36  VLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIREVLLLLLPI------ 89

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRIS-QLSRIDCLSGL 112
                        + L++G +S         +   +  + S+I+ + GL
Sbjct: 90  -----------FVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGL 127


>gnl|CDD|149135 pfam07895, DUF1673, Protein of unknown function (DUF1673).  This
           family contains hypothetical proteins of unknown
           function expressed by two archaeal species.
          Length = 204

 Score = 26.5 bits (59), Expect = 7.0
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 47  NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL--KELFISYNRISQLS 104
            + L  I LT      Y LV +   + +   ++ L   +   +   K+  I Y+ +++  
Sbjct: 58  RLLLASIFLTLA----YFLVISQLGINLLFLLAGLFLSLLLYLFTWKKQMIRYDALAKKP 113

Query: 105 RIDC 108
            I  
Sbjct: 114 VIRY 117


>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
          Length = 481

 Score = 26.5 bits (58), Expect = 7.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208
           VV G PM    L  E+   AAL S E   A+ ++D +++I  S+I
Sbjct: 373 VVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKI 417


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.142    0.409 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,353,864
Number of extensions: 290568
Number of successful extensions: 1258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1206
Number of HSP's successfully gapped: 155
Length of query: 266
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,006,537
Effective search space: 697137438
Effective search space used: 697137438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)