RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781079|ref|YP_003065492.1| diguanylate cyclase
[Candidatus Liberibacter asiaticus str. psy62]
(266 letters)
>3ezu_A Ggdef domain protein; multidomain protein of unknown
function with ggdef-domain, structural genomics; 1.95A
{Geobacter sulfurreducens} (A:187-342)
Length = 156
Score = 124 bits (312), Expect = 1e-29
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 8/156 (5%)
Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
L+G+ + F ++GS + I D+DYFK + DN+GH GD+++ +++
Sbjct: 1 LTGVXTRAGFFKTVGSLAYAAQRSGSNVGIXLIDLDYFKLVGDNYGHQTGDRILQLVAET 60
Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221
+ VGR G+EF +A +LR+ IE + I ++
Sbjct: 61 ITSHLRRSDVVGRYDGDEFVVYLSPVEPASLRTVAENLRRSIEEESAR-XVPVTASIGVA 119
Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257
GI I ++ AD+ L AK +G+N+VV
Sbjct: 120 QGILGTDVDGGIEELVRLADECLXQAKYTGKNKVVV 155
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG,
MQR89A, structural genomics, PSI-2, protein structure
initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
(A:)
Length = 177
Score = 118 bits (296), Expect = 7e-28
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
++++LS D L+GLLN + + + Y + S+V FDID+FK +ND +GH G
Sbjct: 3 QLAKLSXTDRLTGLLNRGTWENLVDAEYERFRRYGQATSLVXFDIDHFKPVNDTYGHLAG 62
Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
D+VI +D GR GGEEF + + A ++ +R+ IE S ++ S
Sbjct: 63 DEVIRHTADVTRNNIRQSDSAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVSTS 122
Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
+G + E +AD+ALY AK+SGRN+VV +
Sbjct: 123 AGDIQYTVSXGIAQLTETPENYXQWXQKADEALYKAKESGRNKVVVSLE 171
>1w25_A Stalked-cell differentiation controlling protein;
two-component system, response regulator, diguanylate
cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter
vibrioides} (A:285-459)
Length = 175
Score = 109 bits (272), Expect = 4e-25
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154
+L+ D L+GL N L + +S + DID+FK+IND FGH +GD+V
Sbjct: 2 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 61
Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSG 213
+ + +L R GGEEF ++ +A +A +R + S +
Sbjct: 62 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 121
Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259
+++TIS G++ + + ++ RAD+ +Y AK SGRN VV +
Sbjct: 122 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKA 168
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics, consortium, NESG; HET: MSE; 2.00A
{Methylococcus capsulatus} (A:)
Length = 171
Score = 105 bits (263), Expect = 5e-24
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
D ++GL N F +++ + ++F D+D FK IND+ GH VGD+++ +
Sbjct: 2 DTVTGLPNRQLFCDRLLQALAAHERDGNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATA 61
Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
+++ V R+GG++F G+ + L I I+
Sbjct: 62 ERIRTAVRDGDTVARIGGDKFTILLNGAKDTLNGALVAQKILDGLAQPFVFG-AQQIVIS 120
Query: 220 ISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
+S GIA E ++ AD A Y AK G+N FS
Sbjct: 121 VSIGIAVSPADGETXEQLLRNADTAXYHAKSRGKNNYQFFSP 162
>3i5c_A Fusion of general control protein GCN4 and WSPR response
regulator protein; C-DI-GMP, ggdef, leucine zipper,
signaling protein; HET: C2E; 1.94A {Pseudomonas
aeruginosa PAO1} PDB: 3i5b_A* (A:31-206)
Length = 176
Score = 102 bits (254), Expect = 5e-23
Identities = 56/166 (33%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
D L+GL N F L +LS++ D+DYFK ND FGH GD+ + ++
Sbjct: 3 DGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVA 62
Query: 160 DQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIH 217
+ R GGEEFA G+S A +LA +R+ +E+ QI+ P H
Sbjct: 63 GAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSH 122
Query: 218 ITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVVCFSD 260
+T+S G++ T I ADQALY AK +GRN+V
Sbjct: 123 LTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQ 168
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural
genomics, PSI-2, protein structure initiative; 1.70A
{Pseudomonas aeruginosa} (A:)
Length = 176
Score = 99.7 bits (247), Expect = 3e-22
Identities = 16/163 (9%), Positives = 40/163 (24%), Gaps = 7/163 (4%)
Query: 106 IDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159
ID +GL N + ++ + I G+P + +
Sbjct: 2 IDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLNTIIRTLGYPFSNDLXLEAR 61
Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219
D++ F ++E + L + E+ + ++
Sbjct: 62 DRIRAELPDFTLYKI-SPTRFGLLLPRQQQEETESVCLRLLRAFESPVVCRGIPIKANVG 120
Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262
+ + + A A+ G ++
Sbjct: 121 LGVLPLADDTLDGDQDWLRLVVSAADDARDRGVGWARYNPPLD 163
>3bre_A Probable two-component response regulator;
protein-nucleotide complex, signaling protein; HET: C2E;
2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A*
(A:176-358)
Length = 183
Score = 90.5 bits (223), Expect = 2e-19
Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
L+GL N F L +LS++ D+DYFK ND FGH GD+ + ++
Sbjct: 1 LTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGA 60
Query: 162 LV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219
+ + R GGEEFA G+S A +LA +R+ +E+ QI+ P H+T
Sbjct: 61 IREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLT 120
Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSD 260
+S G++ +I ADQALY AK +GRN+V
Sbjct: 121 VSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQ 164
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP,
transferase; 2.04A {Pseudomonas aeruginosa PAO1} (A:)
Length = 177
Score = 73.4 bits (178), Expect = 3e-14
Identities = 27/169 (15%), Positives = 65/169 (38%), Gaps = 7/169 (4%)
Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
++ ++S D ++GL N S F + + + ++ + ++ + + + G
Sbjct: 8 KLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHGLSGI 67
Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
D ++ L+ + FG + R G FAA G + ++A L K +EN ++
Sbjct: 68 DLLLGQLAGLMREQFGEEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHLFELN 127
Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260
+ ++ RA + A + G +++ ++
Sbjct: 128 GRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADDAARKGGSQIKQYNP 176
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP,
hydrolase; 2.99A {Pseudomonas aeruginosa PAO1} (A:)
Length = 437
Score = 41.8 bits (95), Expect = 1e-04
Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 7/138 (5%)
Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151
++ ++S D ++GL N S F+ + + + ++ + ++ + + + G
Sbjct: 8 KLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHGLSGI 67
Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211
D ++ L+ + FG + R G FAA G + ++A L K +EN ++
Sbjct: 68 DLLLGQLAGLMREQFGEEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHLFELN 127
Query: 212 SGPSIHITISAGIAERCH 229
+
Sbjct: 128 GRSAQATLSIGVAGLDEK 145
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (ggdef & EAL
domains); ggdef and EAL domains, structural genomics,
PSI-2; 1.80A {Thiobacillus denitrificans atcc 25259}
PDB: 3ii8_A* (A:)
Length = 294
Score = 40.2 bits (92), Expect = 3e-04
Identities = 3/20 (15%), Positives = 5/20 (25%)
Query: 240 ADQALYVAKKSGRNRVVCFS 259
+ SGR +
Sbjct: 2 GSSHHHHHHSSGRENLYFQG 21
>1o6v_A Internalin A; bacterial infection, extracellular
recognition, cell WALL attached, leucine rich repeat;
1.5A {Listeria monocytogenes} (A:46-466)
Length = 421
Score = 34.9 bits (78), Expect = 0.012
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109
V L + I + Y++ L ++ S N+++ ++ + L
Sbjct: 3 VTTLQADRLGIKSIDGVEYLNN--LTQINFSNNQLTDITPLKNL 44
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich
repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B* (B:46-594)
Length = 549
Score = 33.1 bits (73), Expect = 0.038
Identities = 4/58 (6%), Positives = 13/58 (22%), Gaps = 5/58 (8%)
Query: 91 KELFISYNRISQL-SRIDCLSGL----LNHSAFISSLGSYNEKLSIVFFDIDYFKQIN 143
+++FI + I + L + + + +
Sbjct: 1 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS 58
Score = 30.0 bits (65), Expect = 0.34
Identities = 3/29 (10%), Positives = 7/29 (24%), Gaps = 5/29 (17%)
Query: 81 LLGYISGSI-----LKELFISYNRISQLS 104
+ G + + S I+
Sbjct: 520 PRFDMPGFVWNMDQDSTMRFSRQIITTNG 548
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular
pathogenesis, effector protein, virulence factor, toxin;
2.10A {Yersinia pestis} (A:73-454)
Length = 382
Score = 29.5 bits (64), Expect = 0.43
Identities = 1/27 (3%), Positives = 8/27 (29%), Gaps = 5/27 (18%)
Query: 81 LLGYISGSI-----LKELFISYNRISQ 102
++ + L++ ++
Sbjct: 356 VVDPYEFAHETTDKLEDDVFEHHHHHH 382
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine
ladder, asparagine ladder, virulence factor, solenoid,
cell WALL; 2.70A {Listeria monocytogenes} (A:)
Length = 457
Score = 28.8 bits (62), Expect = 0.79
Identities = 2/48 (4%), Positives = 7/48 (14%), Gaps = 5/48 (10%)
Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115
L + + + + + L
Sbjct: 2 TLKAGQTQ-SFNDWFPDDN---FASEVAAAFEMQATDT-ISEEQLATL 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte
receptor B; TLR2, PAM3CSK4, lipopeptide, innate
immunity, cytoplasmic vesicle; HET: NAG BMA MAN PCJ;
1.80A {Mus musculus} PDB: 2z82_A* 2z7x_A* (A:1-513)
Length = 513
Score = 28.8 bits (62), Expect = 0.79
Identities = 10/97 (10%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 12 WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71
+ ++ FS+F+ + + L +LV +S
Sbjct: 423 RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISR 482
Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
+ + ++ L+++++ N C
Sbjct: 483 NQLKSVPDGIFDRLTS--LQKIWLHTNPWDC----SC 513
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme-
inhibitor complex, structural genomics, protein
structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo
sapiens} (W:)
Length = 461
Score = 28.8 bits (62), Expect = 0.80
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 90 LKELFISYNRISQLSRI-DCLSGLLNHSAFISSL 122
L++L + S + D L L + +
Sbjct: 429 LEQLVLYDIYWS--EEMEDRLQALEKDKPSLRVI 460
Score = 26.9 bits (57), Expect = 2.8
Identities = 3/45 (6%), Positives = 12/45 (26%), Gaps = 6/45 (13%)
Query: 70 SLVIISITISLLLGYISGSI------LKELFISYNRISQLSRIDC 108
+ + I L + + + + +++ D
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET:
NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A*
3ciy_A* (A:)
Length = 680
Score = 28.5 bits (61), Expect = 0.95
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108
E +L L + L + + L +++N++ +L +
Sbjct: 6 HEVADCSHLKLT--QVPDDLP------TNITVLNLTHNQLRRLPAANF 45
>2z63_A TOLL-like receptor 4, variable lymphocyte receptor B; TLR4,
MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo
sapiens} (A:1-534)
Length = 534
Score = 28.2 bits (60), Expect = 1.2
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 5/26 (19%)
Query: 81 LLGYISGSI-----LKELFISYNRIS 101
L G L+++++ N
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWD 531
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation,
hemihedral twinning, leucine-rich repeat protein, LRR,
merohedral twinning; 2.2A {Schizosaccharomyces pombe}
(A:)
Length = 386
Score = 28.0 bits (60), Expect = 1.5
Identities = 2/26 (7%), Positives = 5/26 (19%), Gaps = 5/26 (19%)
Query: 81 LLGYISGSI-----LKELFISYNRIS 101
+ S E ++
Sbjct: 353 DEEEEAESQSPEPETSEEEKEDKELA 378
>1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC;
polyketide, polyketide synthase, acyl-COA carboxylase,
carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces
coelicolor} (A:279-530)
Length = 252
Score = 27.5 bits (60), Expect = 1.7
Identities = 12/126 (9%), Positives = 29/126 (23%), Gaps = 11/126 (8%)
Query: 133 FFDI-DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191
+D+ + + D+ + ++ FG R+ G A +
Sbjct: 17 PYDMHSVIEHVLDDAEFFETQ---PLFAPNILTGFG------RVEGRPVGIVANQPMQFA 67
Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251
+ K + + + + I R L A
Sbjct: 68 GCLDITASEKAARFVRTCDAFNVPVLT-FVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEA 126
Query: 252 RNRVVC 257
++
Sbjct: 127 TVPLIT 132
>2z7x_B TOLL-like receptor 1, variable lymphocyte receptor B; TLR2,
TLR1, lipopeptide, innate immunity, glycoprotein, immune
response, inflammatory response, leucine-rich repeat,
membrane; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
(B:1-484)
Length = 484
Score = 27.7 bits (59), Expect = 1.9
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 5/26 (19%)
Query: 81 LLGYISGSI-----LKELFISYNRIS 101
L G L+++++ N
Sbjct: 456 LKSVPDGIFDRLTSLQKIWLHTNPWD 481
Score = 27.3 bits (58), Expect = 2.2
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 68 NLSLVIISITISLLLGYISGSI---LKELFISYNRISQL 103
+ LV S L ++ + L IS N IS+L
Sbjct: 1 SEFLVDRS---KNGLIHVPKDLSQKTTILNISQNYISEL 36
Score = 27.3 bits (58), Expect = 2.3
Identities = 3/26 (11%), Positives = 6/26 (23%), Gaps = 5/26 (19%)
Query: 90 LKELFISYNRISQLSRIDCLSGLLNH 115
+ S N + + L
Sbjct: 2 EFLVDRSKNGLIHVP-----KDLSQK 22
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid
biosynthesis, accase, ligase, transferase; 2.2A
{Mycobacterium tuberculosis} PDB: 2a7s_A (A:292-548)
Length = 257
Score = 26.8 bits (58), Expect = 3.3
Identities = 14/97 (14%), Positives = 23/97 (23%), Gaps = 7/97 (7%)
Query: 141 QINDNFGHPVG-DKVIAFLSDQLVVVFGTPM------FVGRLGGEEFAAAALGSSEQEAA 193
I D+ P +VI L D + GR+ G A +
Sbjct: 12 LIPDSPNQPYDMHEVITRLLDDEFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTHFAGC 71
Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230
+ N K + I + +
Sbjct: 72 LDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTD 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha
fold, ligase; 2.80A {Shigella flexneri 2A} (A:1-288)
Length = 288
Score = 26.3 bits (56), Expect = 4.6
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 6/39 (15%)
Query: 81 LLGYISGSI-----LKELFISYNRISQLS-RIDCLSGLL 113
L I S+ + S + + L L
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSXSDGQQNTLHRPL 280
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex,
LRR, cell cycle/ligase/protein turnover complex; HET:
TPO; 2.30A {Homo sapiens} (B:48-336)
Length = 289
Score = 26.0 bits (55), Expect = 5.3
Identities = 1/25 (4%), Positives = 6/25 (24%), Gaps = 2/25 (8%)
Query: 90 LKELFISYNRISQLSRIDCLSGLLN 114
+ L ++ + +
Sbjct: 2 WQTLDLTGKNLHPD--VTGRLLSQG 24
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating
enzyme, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
(A:)
Length = 95
Score = 26.0 bits (57), Expect = 5.8
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182
VG V L G F G L E +
Sbjct: 10 VGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVS 42
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} (A:)
Length = 313
Score = 25.7 bits (55), Expect = 6.0
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA- 192
++ N+ + V V G P+ +GR G EE + L E A
Sbjct: 237 LNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAF 296
Query: 193 AILANDLRKIIE 204
A ++K E
Sbjct: 297 RKSAEIIKKYCE 308
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains,
signaling protein; 2.65A {Listeria monocytogenes}
(A:43-322)
Length = 280
Score = 25.9 bits (55), Expect = 6.5
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 90 LKELFISYNRISQLSRIDCLSGL 112
+ ++ + + I + I L +
Sbjct: 3 IDQIIANNSDIKSVQGIQYLPNV 25
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 25.9 bits (57), Expect = 6.6
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 8/20 (40%)
Query: 45 IANIF--------LFYIGLT 56
+A++ +FY G+T
Sbjct: 2 LADVMSIESLVEVVFYRGMT 21
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase,
leucine rich repeat domain, type three effector,
salmonella virulence factor; 1.90A {Salmonella
typhimurium} (A:1-297)
Length = 297
Score = 25.6 bits (54), Expect = 7.0
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101
L + V L + ++ L S + + N +S
Sbjct: 263 LLSLSVYRNQLTRLPESLIHL------SSETTVNLEGNPLS 297
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme,
alpha/beta homodimer; HET: FYA; 2.50A {Thermus
thermophilus} (B:42-135)
Length = 94
Score = 25.5 bits (56), Expect = 7.7
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 10/78 (12%)
Query: 126 NEKLSIVFFDIDYFKQIN---DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE--- 179
+L + D ++ +N G V L + G + + G
Sbjct: 17 GTRLKRLVLDAGRTVEVVSGAENARK--GIGVALALPGTELPGLGQKVGERVIQGVRSFG 74
Query: 180 --FAAAALGSSEQEAAIL 195
+ LG E +L
Sbjct: 75 MALSPRELGVGEYGGGLL 92
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} (D:125-300)
Length = 176
Score = 25.2 bits (55), Expect = 8.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 231 EPISTIIYRADQALYVAKKSGRNRVV---CFSD 260
E + I YR D+ +YV K R VV F D
Sbjct: 15 ENRAVIHYRDDETMYVESKKDRVTVVFSTVFKD 47
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.142 0.409
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,949,057
Number of extensions: 84533
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 50
Length of query: 266
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 179
Effective length of database: 2,015,014
Effective search space: 360687506
Effective search space used: 360687506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.3 bits)