BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781079|ref|YP_003065492.1| diguanylate cyclase
[Candidatus Liberibacter asiaticus str. psy62]
(266 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
Length = 266
Score = 534 bits (1376), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG
Sbjct: 1 MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60
Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS
Sbjct: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120
Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF
Sbjct: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180
Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA
Sbjct: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240
Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266
DQALYVAKKSGRNRVVCFSDIENNTC
Sbjct: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266
>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 963
Score = 53.9 bits (128), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 107 DCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158
D L+G+ N +F+ L + N + +++ DID +K+IND G VGD V+ L
Sbjct: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIH 217
+ ++ + P + RL G F + + + A A +RK I IN+ I
Sbjct: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLER-EIT 653
Query: 218 ITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCF 258
+T S G A + S+ ++ A+ A+Y AK G N V F
Sbjct: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 26.2 bits (56), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRL 175
+ + EK SI F + + D+ PVG+ V+ L + +V FG P F+GRL
Sbjct: 259 ISARGEKASIGFSAV-----VKDSDNRPVGE-VLRNLESEDLVKFGLIPEFIGRL 307
>gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 423
Score = 24.6 bits (52), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 17/124 (13%)
Query: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112
I + P GL+Y+ + I + + + LG+ + + + N+I + G
Sbjct: 93 IKIAPL-GLQYVFFSDSGSTSIEVALKMALGFFNNNNMPR-----NKIVVMEH--GYHGD 144
Query: 113 LNHSAFISSLGSYNEKLSIVFFDIDYF---------KQINDNFGHPVGDKVIAFLSDQLV 163
S +S G++N + FD++ K ++D H K+ AFL + L+
Sbjct: 145 TIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLI 204
Query: 164 VVFG 167
+ G
Sbjct: 205 LGAG 208
>gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 426
Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 180 FAAAALGSSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238
F+ ALG + + L I ++ +++ I+ P I +T+S GIA + I I +
Sbjct: 28 FSGMALGHFVPQIGVQMQPLGDIFVKTTKMLIT--PVIFLTVSTGIARMKDMKVIGQIFW 85
Query: 239 RA 240
+A
Sbjct: 86 KA 87
>gi|254781219|ref|YP_003065632.1| hypothetical protein CLIBASIA_05630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 200
Score = 23.9 bits (50), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS 130
L + + LL ILK+ +Y+R S G LN S + +
Sbjct: 99 LAVAKVVSDELLHDKLNKILKKSVRNYSRDS---------GHLNRDVIFHS------RYA 143
Query: 131 IVFFDIDYFKQINDNFGHPVG--DKVIAFLSDQLVVVFGTPMFV 172
++ + D++K+I FG+P I+ L+D++ T FV
Sbjct: 144 LIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFV 187
>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 890
Score = 23.1 bits (48), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 147 GHPVGDKVIAFLSDQLVVVFGTPM---FVGRLGGEEFAA 182
G P K L D L+ +FG+P F+ ++G +E A
Sbjct: 576 GDPGRSKFYLSLQDDLMRIFGSPRMESFLRKIGLKEGEA 614
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.142 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,435
Number of Sequences: 1233
Number of extensions: 7088
Number of successful extensions: 32
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 14
length of query: 266
length of database: 328,796
effective HSP length: 72
effective length of query: 194
effective length of database: 240,020
effective search space: 46563880
effective search space used: 46563880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)