Query gi|254781080|ref|YP_003065493.1| hypothetical protein CLIBASIA_04910 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 85 No_of_seqs 100 out of 205 Neff 3.6 Searched_HMMs 33803 Date Wed Jun 1 21:14:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781080.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1a9x_A Carbamoyl phosphate sy 69.8 8.4 0.00025 20.3 4.6 32 15-46 51-87 (87) 2 >1gk7_A Vimentin; intermediate 61.3 12 0.00035 19.3 4.0 28 9-36 11-38 (39) 3 >2vf7_A UVRA2, excinuclease AB 59.9 4.2 0.00013 22.1 1.5 22 29-50 7-31 (77) 4 >1wtj_A Ureidoglycolate dehydr 52.6 12 0.00037 19.2 2.9 53 2-54 7-59 (105) 5 >1v9n_A Malate dehydrogenase; 46.7 22 0.00064 17.6 3.4 54 1-54 7-60 (117) 6 >2r6f_A Excinuclease ABC subun 46.4 12 0.00036 19.2 2.1 22 28-49 7-31 (78) 7 >1z2i_A Malate dehydrogenase; 43.9 20 0.0006 17.8 2.9 52 3-54 7-58 (117) 8 >3i0p_A Malate dehydrogenase; 39.2 23 0.00067 17.5 2.5 52 3-54 4-55 (115) 9 >1vbi_A Type 2 malate/lactate 32.4 41 0.0012 15.9 3.3 49 7-55 2-50 (109) 10 >1xrh_A Ureidoglycolate dehydr 27.3 50 0.0015 15.3 3.6 49 6-54 3-51 (114) 11 >2aze_A Transcription factor D 25.5 54 0.0016 15.1 2.9 23 15-37 2-24 (113) 12 >2z07_A Putative uncharacteriz 25.1 55 0.0016 15.1 2.8 33 52-84 38-71 (117) 13 >2g8y_A Malate/L-lactate dehyd 24.4 56 0.0017 15.0 3.0 51 4-54 25-75 (169) 14 >1flo_A FLP recombinase; tyros 23.7 24 0.00071 17.4 0.5 23 10-32 12-34 (110) 15 >1nxu_A Hypothetical oxidoredu 23.5 59 0.0017 14.9 3.6 47 7-53 2-48 (125) 16 >3gpv_A Transcriptional regula 22.7 61 0.0018 14.8 4.1 34 39-72 11-44 (92) 17 >2x19_B Importin-13; nuclear t 21.3 40 0.0012 15.9 1.2 43 6-48 62-105 (109) 18 >2hv8_D RAB11 family-interacti 21.0 55 0.0016 15.0 1.9 14 9-22 38-51 (64) 19 >3kb2_A SPBC2 prophage-derived 20.5 67 0.002 14.5 2.6 35 45-79 102-136 (173) 20 >1gax_A Valrs, valyl-tRNA synt 20.4 68 0.002 14.5 4.6 65 16-80 95-159 (159) No 1 >>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:411-497) Probab=69.84 E-value=8.4 Score=20.26 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCCC Q ss_conf 9999999999999999999-----9999999875898 Q gi|254781080|r 15 TFIERLERLEEEKKLLTEN-----IKDIYGEAKATGF 46 (85) Q Consensus 15 ~~IERIErLeeEkk~i~~d-----ikdVyaEAK~~Gf 46 (85) =|+++|+.|-+--+.|... -++++-+||..|| T Consensus 51 wFL~ki~~iv~~e~~l~~~~~~~l~~e~L~~aK~~GF 87 (87) T 1a9x_A 51 WFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGF 87 (87) T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC T ss_conf 9999999999987643104766689999999987388 No 2 >>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} (A:) Probab=61.26 E-value=12 Score=19.32 Aligned_cols=28 Identities=21% Similarity=0.564 Sum_probs=23.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0899999999999999999999999999 Q gi|254781080|r 9 TQDQLRTFIERLERLEEEKKLLTENIKD 36 (85) Q Consensus 9 a~~~Lr~~IERIErLeeEkk~i~~dikd 36 (85) -.++|-+|||++-.||.+-+.+...|+. T Consensus 11 LNdRlA~YIekVr~LE~~N~~Le~~i~~ 38 (39) T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 8889998999999999853799999851 No 3 >>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:601-677) Probab=59.85 E-value=4.2 Score=22.15 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=18.8 Q ss_pred HHHHHHHHHHH---HHHHCCCCHHH Q ss_conf 99999999999---98758987999 Q gi|254781080|r 29 LLTENIKDIYG---EAKATGFDVKA 50 (85) Q Consensus 29 ~i~~dikdVya---EAK~~GfD~K~ 50 (85) ++.+.|+.+|| +||..||++.- T Consensus 7 ~i~d~IR~lFA~~~~ak~~g~~~~~ 31 (77) T 2vf7_A 7 GLFDQVRKLFAATPLAKKRGYNAGR 31 (77) T ss_dssp STHHHHHHHHHTSHHHHHTTCCGGG T ss_pred EEEEHHHHHHCCCCHHHHCCCCCCC T ss_conf 0220123331247088762854452 No 4 >>1wtj_A Ureidoglycolate dehydrogenase; NADPH dependent enzyme, oxidoreductase; 1.55A {Pseudomonas syringae PV} PDB: 2cwf_A* 2cwh_A* (A:1-71,A:310-343) Probab=52.62 E-value=12 Score=19.18 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=39.1 Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 41243100899999999999999999999999999999987589879999999 Q gi|254781080|r 2 IDNIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKI 54 (85) Q Consensus 2 ~~~~~~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~I 54 (85) |++...++.++|+.|+.++=.=--=-.+.+..+-+++.+|-..|.+..=+..+ T Consensus 7 m~~~~~is~eeL~~fv~~vL~a~G~s~e~A~~vAd~LV~ADl~Gv~SHGi~RL 59 (105) T 1wtj_A 7 DQPTQTVSYPQLIDLLRRIFVVHGTSPEVADVLAENCASAQRDGSHSHGIFRI 59 (105) T ss_dssp ---CEEECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCGGGTGGGH T ss_pred CCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 99864876999999999999986999999999999999997689726519899 No 5 >>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii OT3} (A:1-73,A:317-360) Probab=46.68 E-value=22 Score=17.61 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=39.1 Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 941243100899999999999999999999999999999987589879999999 Q gi|254781080|r 1 MIDNIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKI 54 (85) Q Consensus 1 ~~~~~~~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~I 54 (85) +|.+...++.++|++|+.++=.=--=-..-+..+.+++.+|--.|++..=+..+ T Consensus 7 ~~~~~~~i~~e~l~~~~~~il~~~G~s~~~A~~vA~~Lv~Adl~G~~SHGi~Rl 60 (117) T 1v9n_A 7 VDENYIRVPKDRLFSFIVRVLTKLGVPEEDAKIVADNLVXADLRGVESHGVQRL 60 (117) T ss_dssp CCTTEEEECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCGGGSGGGH T ss_pred CCCCEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 788627976999999999999986999999999999999987499625689789 No 6 >>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:715-792) Probab=46.44 E-value=12 Score=19.19 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHH---HHHHCCCCHH Q ss_conf 999999999999---9875898799 Q gi|254781080|r 28 KLLTENIKDIYG---EAKATGFDVK 49 (85) Q Consensus 28 k~i~~dikdVya---EAK~~GfD~K 49 (85) -++.+.|+.+|| +||.+||++. T Consensus 7 ~~i~d~IR~lFA~~~~ak~~g~~~~ 31 (78) T 2r6f_A 7 TGVFDDIRDVFASTNEAKVRGYKKG 31 (78) T ss_dssp HTHHHHHHHHHHTSHHHHHTTCCTT T ss_pred ECCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 1231056777655446765177644 No 7 >>1z2i_A Malate dehydrogenase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: NAD; 2.20A {Agrobacterium tumefaciens} (A:1-71,A:313-358) Probab=43.91 E-value=20 Score=17.79 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=38.2 Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 1243100899999999999999999999999999999987589879999999 Q gi|254781080|r 3 DNIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKI 54 (85) Q Consensus 3 ~~~~~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~I 54 (85) .+...++.++|++|+.++=.=--=-...++.+-+++.+|-..|++..=+..+ T Consensus 7 ~~~~~Is~eeLr~lv~~vL~a~Gls~e~A~~VAd~LV~ADL~Gi~SHGL~RL 58 (117) T 1z2i_A 7 KATVLARLDELERFCRAVFLAVGTDEETADAATRAMMHGTRLGVDSHGVRLL 58 (117) T ss_dssp --CEEECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCGGGSGGGH T ss_pred CCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 7428851999999999999986999999999999999997289714569789 No 8 >>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, niaid, infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica} (A:1-70,A:321-365) Probab=39.15 E-value=23 Score=17.49 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=37.7 Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 1243100899999999999999999999999999999987589879999999 Q gi|254781080|r 3 DNIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKI 54 (85) Q Consensus 3 ~~~~~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~I 54 (85) ++...++.++|+.|+.++=.---=-...+..+.++..+|-..|.+..=+-.+ T Consensus 4 ~~~~~Is~eeLr~fv~~vL~a~Gvsee~A~~vAd~LV~ADLrGv~SHGi~RL 55 (115) T 3i0p_A 4 SQTKNVSIDTIKEFMYQVLLKVGSDEENARMVRDTLIAADLRGMDTHGIQRF 55 (115) T ss_dssp -CEEEECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTSSGGGH T ss_pred CCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 6652545999999999999986999999999999999998089746597570 No 9 >>1vbi_A Type 2 malate/lactate dehydrogenase; malate dehydrogenase, NAD(P) binding protein, thermus thermophilus HB8, structural genomics; HET: NAD; 1.80A {Thermus thermophilus} PDB: 1x0a_A (A:1-62,A:298-344) Probab=32.39 E-value=41 Score=15.87 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=36.4 Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 1008999999999999999999999999999999875898799999999 Q gi|254781080|r 7 NVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKIL 55 (85) Q Consensus 7 ~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~Ii 55 (85) .++.++|++|+.++=.=--=..+.+..+.++..+|-..|++..=+..+- T Consensus 2 rIs~eeL~~fv~~vL~a~G~see~A~~vAevLV~ADL~Gi~SHGI~RLp 50 (109) T 1vbi_A 2 RWRADFLSAWAEALLRKAGADEPSAKAVAWALVEADLRGVGSHGLLRLP 50 (109) T ss_dssp EECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCGGGSGGGHH T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 2489999999999999869899999999999999973997145897899 No 10 >>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI; 2.25A {Escherichia coli} (A:1-64,A:302-351) Probab=27.32 E-value=50 Score=15.32 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=36.3 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 3100899999999999999999999999999999987589879999999 Q gi|254781080|r 6 QNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKI 54 (85) Q Consensus 6 ~~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~I 54 (85) -.++.++|++|+.++=.---=...-++.+.++..+|-..|....=+..+ T Consensus 3 mrVs~~eLr~lv~~iL~a~Gl~ee~A~~vAd~Lv~ADl~Gi~SHGl~RL 51 (114) T 1xrh_A 3 SKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRV 51 (114) T ss_dssp EEECHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCGGGTGGGH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 2017999999999999986999999999999999987589637739899 No 11 >>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} (A:1-58,A:101-155) Probab=25.48 E-value=54 Score=15.11 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254781080|r 15 TFIERLERLEEEKKLLTENIKDI 37 (85) Q Consensus 15 ~~IERIErLeeEkk~i~~dikdV 37 (85) .|...|++||+||..-.++|+.- T Consensus 2 ~~aQe~~~Le~Ek~~R~~~I~qK 24 (113) T 2aze_A 2 EFAQECQNLEVERQRRLERIKQK 24 (113) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 57899999999999999999999 No 12 >>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} (A:1-103,A:407-420) Probab=25.10 E-value=55 Score=15.06 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=26.0 Q ss_pred HHHHHHHHCCHH-HHHHHHHHHHHHHHHHCCCCC Q ss_conf 999999618999-999999999999998598867 Q gi|254781080|r 52 KKILSLRKKDEK-QWMEEEQILDVYLRALGMLKD 84 (85) Q Consensus 52 r~IiklRk~d~~-er~E~e~iLd~Y~~ALGm~~~ 84 (85) .+.|.+..-|++ ...|-+.|+|-|...-||+|| T Consensus 38 F~Ai~lA~~Dpe~Ak~ql~~Lfd~~q~~~G~iPd 71 (117) T 2z07_A 38 FIALGWTQVDWERAWQELLCLFDYGQGPDGXLPH 71 (117) T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHCCTTCCCCS T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCH T ss_conf 9999998729999999999999961788985730 No 13 >>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; HET: NAD 1PE; 2.15A {Escherichia coli K12} (A:1-88,A:305-385) Probab=24.37 E-value=56 Score=14.98 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=37.0 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 243100899999999999999999999999999999987589879999999 Q gi|254781080|r 4 NIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKI 54 (85) Q Consensus 4 ~~~~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~I 54 (85) +...++.++|++|+.+|=.=--=-..-++.+.+++.+|--.|.+..=+..+ T Consensus 25 ~~~~i~~~~l~~~~~~vl~~~G~~~~~A~~vA~~Lv~Adl~G~~SHGi~Rl 75 (169) T 2g8y_A 25 SGHRFDAQTLHSFIQAVFRQXGSEEQEAKLVADHLIAANLAGHDSHGIGXF 75 (169) T ss_dssp CCEEECHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCGGGTGGGH T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 355259999999999999986999999999999999997489857689799 No 14 >>1flo_A FLP recombinase; tyrosine recombinase, protein-DNA complex, holliday- junction, domain-swapping, ligase, lyase/DNA complex; 2.65A {Saccharomyces cerevisiae} (A:1-110) Probab=23.65 E-value=24 Score=17.36 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999999999999 Q gi|254781080|r 10 QDQLRTFIERLERLEEEKKLLTE 32 (85) Q Consensus 10 ~~~Lr~~IERIErLeeEkk~i~~ 32 (85) .--.|+|+||.||-.-||-++-. T Consensus 12 kvlvrqfverferpsgekialca 34 (110) T 1flo_A 12 KVLVRQFVERFERPSGEKIALCA 34 (110) T ss_dssp HHHHHHHHHHHHTTCHHHHGGGH T ss_pred HHHHHHHHHHHCCCCCCCHHHHH T ss_conf 88999999983288876014358 No 15 >>1nxu_A Hypothetical oxidoreductase YIAK; hypothetical protein, structural genomics, PSI, protein structure initiative; 1.80A {Escherichia coli} (A:1-62,A:271-333) Probab=23.53 E-value=59 Score=14.88 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=34.9 Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 10089999999999999999999999999999998758987999999 Q gi|254781080|r 7 NVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKK 53 (85) Q Consensus 7 ~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~ 53 (85) .++.++|++|++++=.=--=...-+..+.+++.+|--.|.+..=+.. T Consensus 2 ri~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~adl~G~~SHGv~R 48 (125) T 1nxu_A 2 KVTFEQLKAAFNRVLISRGVDSETADACAEXFARTTESGVYSHGVNR 48 (125) T ss_dssp EECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCTTTGGG T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH T ss_conf 55599999999999998599999999999999999748961520989 No 16 >>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian} (A:57-148) Probab=22.68 E-value=61 Score=14.77 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=23.5 Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 9987589879999999999618999999999999 Q gi|254781080|r 39 GEAKATGFDVKAIKKILSLRKKDEKQWMEEEQIL 72 (85) Q Consensus 39 aEAK~~GfD~K~lr~IiklRk~d~~er~E~e~iL 72 (85) .-+|+.||..+-||+.+.++..+.....+--.++ T Consensus 11 ~~~r~lG~sL~eIk~~l~l~~~~~~~~~~~~~ll 44 (92) T 3gpv_A 11 LCLKNTGXPIQKIKQFIDWSXEGDSTILHRLKLX 44 (92) T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCGGGHHHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 9999960789999999999866767899999999 No 17 >>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} (B:855-963) Probab=21.34 E-value=40 Score=15.93 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=31.0 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCH Q ss_conf 31008999999999999999999999999999999875-89879 Q gi|254781080|r 6 QNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKA-TGFDV 48 (85) Q Consensus 6 ~~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~-~GfD~ 48 (85) ..++.++-..|+..|-++.--|+...+-+|+-.-..+| .|||- T Consensus 62 ~~vs~~~ke~F~~~il~~r~~kr~~~~~vkeFwl~crGL~g~~Y 105 (109) T 2x19_B 62 ARLSPEQKDTFSQQILRERVNKRRVKEXVKEFTLLCRGLHGTDY 105 (109) T ss_dssp TTCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHC------ T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 89999999999999987157899999999999999748999864 No 18 >>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} (D:) Probab=20.99 E-value=55 Score=15.04 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=9.1 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 08999999999999 Q gi|254781080|r 9 TQDQLRTFIERLER 22 (85) Q Consensus 9 a~~~Lr~~IERIEr 22 (85) ...+||+||++|-- T Consensus 38 ~N~rLR~YID~il~ 51 (64) T 2hv8_D 38 INFRLQDYIDRIIV 51 (64) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 19 >>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* (A:) Probab=20.52 E-value=67 Score=14.49 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=29.2 Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 98799999999996189999999999999999985 Q gi|254781080|r 45 GFDVKAIKKILSLRKKDEKQWMEEEQILDVYLRAL 79 (85) Q Consensus 45 GfD~K~lr~IiklRk~d~~er~E~e~iLd~Y~~AL 79 (85) --||-++++-++.|--.--+-..-+.+|++|+... T Consensus 102 hadpsvikkrlrvrgdeyiegkdidsilelyrev~ 136 (173) T 3kb2_A 102 HADPSVIKKRLRVRGDEYIEGKDIDSILELYREVX 136 (173) T ss_dssp ECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHH T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 69999999998843244300001357899999986 No 20 >>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} (A:704-862) Probab=20.39 E-value=68 Score=14.47 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=51.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999999999999998758987999999999961899999999999999999859 Q gi|254781080|r 16 FIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWMEEEQILDVYLRALG 80 (85) Q Consensus 16 ~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~IiklRk~d~~er~E~e~iLd~Y~~ALG 80 (85) +-..+.||+-+...+...++-+-+--...||-.|+=..++..-+..-.+..++-.-+.-...-|| T Consensus 95 ~~~e~~kl~k~l~kl~~ei~~~~~~L~n~~F~~KAP~~vv~~e~~kl~~~~~e~~~l~~~l~~L~ 159 (159) T 1gax_A 95 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQIG 159 (159) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999999999876787777739999999999999999999999999998648 Done!