Query gi|254781080|ref|YP_003065493.1| hypothetical protein CLIBASIA_04910 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 100 out of 205
Neff 3.6
Searched_HMMs 23785
Date Wed Jun 1 00:35:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781080.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gk7_A Vimentin; intermediate 62.0 5.1 0.00022 20.6 3.0 28 9-36 11-38 (39)
2 2vkl_A RV0948C/MT0975; helical 58.1 11 0.00048 18.4 7.3 79 2-80 6-89 (90)
3 2kna_A Baculoviral IAP repeat- 32.0 29 0.0012 15.8 3.4 24 36-59 29-52 (104)
4 2f46_A Hypothetical protein; 7 23.0 26 0.0011 16.1 1.4 27 33-59 129-155 (156)
5 2hv8_D RAB11 family-interactin 22.2 35 0.0015 15.3 1.9 13 9-21 38-50 (64)
6 2g8y_A Malate/L-lactate dehydr 21.5 45 0.0019 14.6 2.7 51 3-53 24-74 (385)
7 2z0r_A Putative uncharacterize 20.3 28 0.0012 15.9 1.1 17 68-84 58-74 (103)
8 3gpv_A Transcriptional regulat 16.1 60 0.0025 13.8 4.1 24 39-62 67-90 (148)
9 1wle_A Seryl-tRNA synthetase; 15.2 63 0.0026 13.7 9.1 38 10-47 76-113 (501)
10 3i0p_A Malate dehydrogenase; a 15.2 63 0.0026 13.7 2.5 50 4-53 5-54 (365)
No 1
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=62.01 E-value=5.1 Score=20.63 Aligned_cols=28 Identities=21% Similarity=0.564 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0899999999999999999999999999
Q gi|254781080|r 9 TQDQLRTFIERLERLEEEKKLLTENIKD 36 (85)
Q Consensus 9 a~~~Lr~~IERIErLeeEkk~i~~dikd 36 (85)
-.++|-+||+++-.||.+-+.+...|+.
T Consensus 11 LNdRlA~YidkVr~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9899999999999899989999999974
No 2
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=58.07 E-value=11 Score=18.43 Aligned_cols=79 Identities=16% Similarity=0.082 Sum_probs=56.5
Q ss_pred CCHHHHCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
Q ss_conf 4124310089999999999----999999999999999999998758987999999999961-89999999999999999
Q gi|254781080|r 2 IDNIQNVTQDQLRTFIERL----ERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRK-KDEKQWMEEEQILDVYL 76 (85)
Q Consensus 2 ~~~~~~va~~~Lr~~IERI----ErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~IiklRk-~d~~er~E~e~iLd~Y~ 76 (85)
+++.....=++||.-|..| -.|-.+...++..|..+..+....-||+.=-.+|++-.+ ..+.--.=.++++.+|+
T Consensus 6 ~~~~~~~~L~~lR~~ID~iD~~i~~LL~~R~~l~~~Ig~~K~~~g~~i~dp~RE~~vl~r~~~~~~eg~~~a~~ll~i~R 85 (90)
T 2vkl_A 6 LESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGR 85 (90)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 47986578999999999999999999999999999999999984999879599999999999876313069999999971
Q ss_pred HHHC
Q ss_conf 9859
Q gi|254781080|r 77 RALG 80 (85)
Q Consensus 77 ~ALG 80 (85)
..||
T Consensus 86 ~~~~ 89 (90)
T 2vkl_A 86 GRLG 89 (90)
T ss_dssp CCCC
T ss_pred HCCC
T ss_conf 2238
No 3
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=32.03 E-value=29 Score=15.83 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=19.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999998758987999999999961
Q gi|254781080|r 36 DIYGEAKATGFDVKAIKKILSLRK 59 (85)
Q Consensus 36 dVyaEAK~~GfD~K~lr~IiklRk 59 (85)
.|-..|-..||++..+|++|+-|=
T Consensus 29 pvV~~AleMGF~~~~Ir~~v~rk~ 52 (104)
T 2kna_A 29 PMVQEAIRMGFSFKDIKKIMEEKI 52 (104)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999991898999999999999
No 4
>2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=23.00 E-value=26 Score=16.11 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999998758987999999999961
Q gi|254781080|r 33 NIKDIYGEAKATGFDVKAIKKILSLRK 59 (85)
Q Consensus 33 dikdVyaEAK~~GfD~K~lr~IiklRk 59 (85)
..-++.++++..|||.--+++-+.-||
T Consensus 129 ~~e~al~~~~~~G~~~~~~~~~l~~~~ 155 (156)
T 2f46_A 129 PVDEIIRRAQAAGVNLENFRERLDNAR 155 (156)
T ss_dssp CHHHHHHHHHHTTCCCGGGHHHHHHTC
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 999999999982999688899998702
No 5
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=22.24 E-value=35 Score=15.31 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 0899999999999
Q gi|254781080|r 9 TQDQLRTFIERLE 21 (85)
Q Consensus 9 a~~~Lr~~IERIE 21 (85)
...+||+||++|-
T Consensus 38 ~N~rLR~YID~Il 50 (64)
T 2hv8_D 38 INFRLQDYIDRII 50 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 6
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; HET: NAD 1PE; 2.15A {Escherichia coli K12}
Probab=21.54 E-value=45 Score=14.62 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=35.5
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 124310089999999999999999999999999999998758987999999
Q gi|254781080|r 3 DNIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKK 53 (85)
Q Consensus 3 ~~~~~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~ 53 (85)
+....+..+.|++|+..+=+=--=...-+..+-+++.+|--+|.+..=+..
T Consensus 24 ~~~~r~~~~~L~~~~~~~l~~~G~~~~~A~~vA~~Lv~Adl~G~~SHG~~r 74 (385)
T 2g8y_A 24 ESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGM 74 (385)
T ss_dssp -CCEEECHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCGGGTGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 635303899999999999998699999999999999999808986778989
No 7
>2z0r_A Putative uncharacterized protein TTHA0547; alpha/beta protein, structural genomics, unknown function, NPPSFA; 2.30A {Thermus thermophilus HB8}
Probab=20.32 E-value=28 Score=15.91 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999998598867
Q gi|254781080|r 68 EEQILDVYLRALGMLKD 84 (85)
Q Consensus 68 ~e~iLd~Y~~ALGm~~~ 84 (85)
--++-+.|+.||||+.-
T Consensus 58 ~~ALKEayL~ALG~L~V 74 (103)
T 2z0r_A 58 SRALKEAYLRALGMLQV 74 (103)
T ss_dssp SHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCE
T ss_conf 68889999999754043
No 8
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=16.05 E-value=60 Score=13.84 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=18.4
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCH
Q ss_conf 998758987999999999961899
Q gi|254781080|r 39 GEAKATGFDVKAIKKILSLRKKDE 62 (85)
Q Consensus 39 aEAK~~GfD~K~lr~IiklRk~d~ 62 (85)
...+..||..+-+++++.+.....
T Consensus 67 ~~lr~~G~sL~eIk~ll~~~~~~~ 90 (148)
T 3gpv_A 67 LCLKNTGMPIQKIKQFIDWSMEGD 90 (148)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCG
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 999996999999999998886689
No 9
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=15.20 E-value=63 Score=13.70 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89999999999999999999999999999998758987
Q gi|254781080|r 10 QDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFD 47 (85)
Q Consensus 10 ~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD 47 (85)
-+++|+....++.|..+++.++..|+......+..+-.
T Consensus 76 d~e~r~l~~e~e~Lr~erN~~sk~I~~l~~~~~~~~~~ 113 (501)
T 1wle_A 76 WQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQ 113 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHC
T ss_conf 99999999999999999999999999998567751000
No 10
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, niaid, infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=15.18 E-value=63 Score=13.70 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=35.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 24310089999999999999999999999999999998758987999999
Q gi|254781080|r 4 NIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKK 53 (85)
Q Consensus 4 ~~~~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~ 53 (85)
.+-.++.++|++|+.++=.=--=...-++.+.+.+-+|--+|.|..=+..
T Consensus 5 ~~~~i~~~~l~~~~~~~l~~~G~~~~~A~~va~~Lv~adl~G~~SHG~~r 54 (365)
T 3i0p_A 5 QTKNVSIDTIKEFMYQVLLKVGSDEENARMVRDTLIAADLRGMDTHGIQR 54 (365)
T ss_dssp CEEEECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTSSGGG
T ss_pred CCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 65254599999999999998699999999999999999808974659757
Done!