RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781080|ref|YP_003065493.1| hypothetical protein
CLIBASIA_04910 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>gnl|CDD|33545 COG3750, COG3750, Uncharacterized protein conserved in bacteria
          [Function unknown].
          Length = 85

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 45/80 (56%), Positives = 59/80 (73%)

Query: 3  DNIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDE 62
             Q V   QLR FIER+ERLEEEKK + ++IKD+Y EAK  GFDVKA++ I+ LRK D+
Sbjct: 6  STSQTVAAGQLRAFIERIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDK 65

Query: 63 KQWMEEEQILDVYLRALGML 82
           +  EE+ ILD+Y+ ALGM+
Sbjct: 66 AERQEEDAILDLYMDALGMI 85


>gnl|CDD|39661 KOG4460, KOG4460, KOG4460, Nuclear pore complex, Nup88/rNup84
           component [Nuclear structure, Intracellular trafficking,
           secretion, and vesicular transport].
          Length = 741

 Score = 26.6 bits (58), Expect = 1.4
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 15/90 (16%)

Query: 2   IDNIQNVTQDQLRTFIERLERLEEEKKLLTEN---IKDIYGEAKATGFD-VKAIKKILSL 57
           +  + +  + QL    + L    EE+K L E    + D Y EAK    D +  +KK+L  
Sbjct: 590 VKLLCDQKKKQL----QDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHS 645

Query: 58  RKKD-------EKQWMEEEQILDVYLRALG 80
              +       E+ + +E Q++   LR LG
Sbjct: 646 FHSELPVLSDAERDFKKELQLIPDQLRHLG 675


>gnl|CDD|37356 KOG2145, KOG2145, KOG2145, Cytoplasmic tryptophanyl-tRNA synthetase
           [Translation, ribosomal structure and biogenesis].
          Length = 397

 Score = 26.4 bits (58), Expect = 1.8
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 4/28 (14%)

Query: 22  RLEEEKKLLTENIKDIYGEAKATGFDVK 49
            LE+ KK   EN KDI     A GFD K
Sbjct: 137 TLEDAKKYARENAKDII----AVGFDPK 160


>gnl|CDD|143446 cd07128, ALDH_MaoC-N, N-terminal domain of the monoamine oxidase
          C dehydratase.  The N-terminal domain of the MaoC
          dehydratase, a monoamine oxidase regulatory protein.
          Orthologs of MaoC include PaaZ (Escherichia coli) and
          PaaN (Pseudomonas putida), which are putative
          ring-opening enzymes of the aerobic phenylacetic acid
          (PA) catabolic pathway. The C-terminal domain of MaoC
          has sequence similarity to enoyl-CoA hydratase. Also
          included in this CD is a novel Burkholderia xenovorans
          LB400 ALDH of the aerobic benzoate oxidation (box)
          pathway. This pathway involves first the synthesis of a
          CoA thio-esterified aromatic acid, with subsequent
          dihydroxylation and cleavage steps, yielding the CoA
          thio-esterified aliphatic aldehyde,
          3,4-dehydroadipyl-CoA semialdehyde, which is further
          converted into its corresponding CoA acid by the
          Burkholderia LB400 ALDH.
          Length = 513

 Score = 25.7 bits (57), Expect = 3.0
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 13 LR--TFIERLERLEEEKKLLTENIKDIYGEAKATG 45
          LR  TF ER   L+   K L E  +D+Y  + ATG
Sbjct: 53 LRALTFHERAAMLKALAKYLMERKEDLYALSAATG 87


>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
          Serine/Threonine Kinase, Serum- and
          Glucocorticoid-induced Kinase 1.  Serine/Threonine
          Kinases (STKs), Serum- and Glucocorticoid-induced
          Kinase (SGK) subfamily, SGK1 isoform, catalytic (c)
          domain. STKs catalyze the transfer of the
          gamma-phosphoryl group from ATP to serine/threonine
          residues on protein substrates. The SGK subfamily is
          part of a larger superfamily that includes the
          catalytic domains of other protein STKs, protein
          tyrosine kinases, RIO kinases, aminoglycoside
          phosphotransferase, choline kinase, and
          phosphoinositide 3-kinase. There are three isoforms of
          SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
          expressed and is under transcriptional control of
          numerous stimuli including cell stress (cell
          shrinkage), serum, hormones (gluco- and
          mineralocorticoids), gonadotropins, growth factors,
          interleukin-6, and other cytokines. It plays roles in
          sodium retention and potassium elimination in the
          kidney, nutrient transport, salt sensitivity, memory
          consolidation, and cardiac repolarization. A common
          SGK1 variant is associated with increased blood
          pressure and body weight. SGK1 may also contribute to
          tumor growth, neurodegeneration, fibrosing disease, and
          ischemia.
          Length = 325

 Score = 25.4 bits (55), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 46 FDVKAIKKILSLRKKDEKQWMEEEQIL 72
          + VK ++K   L+KK+EK  M E  +L
Sbjct: 23 YAVKVLQKKAILKKKEEKHIMSERNVL 49


>gnl|CDD|34572 COG4965, TadB, Flp pilus assembly protein TadB [Intracellular
           trafficking and secretion].
          Length = 309

 Score = 24.8 bits (54), Expect = 5.2
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 4   NIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGF 46
           +IQ+     L   ++ L R+  E+K +   ++ +  EA+ + +
Sbjct: 211 SIQSRHGGNLSELLDNLSRVIRERKKMKAKVRALSAEARMSAW 253


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.135    0.357 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,010,454
Number of extensions: 45988
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 78
Length of query: 85
Length of database: 6,263,737
Length adjustment: 54
Effective length of query: 31
Effective length of database: 5,096,851
Effective search space: 158002381
Effective search space used: 158002381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.6 bits)