BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781081|ref|YP_003065494.1| hypothetical protein
CLIBASIA_04915 [Candidatus Liberibacter asiaticus str. psy62]
(93 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781081|ref|YP_003065494.1| hypothetical protein CLIBASIA_04915 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 93
Score = 183 bits (464), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MSEIMCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLD 60
MSEIMCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLD
Sbjct: 1 MSEIMCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLD 60
Query: 61 KFGSLISDFHRNSESELVRCSDSESEEAKEGTE 93
KFGSLISDFHRNSESELVRCSDSESEEAKEGTE
Sbjct: 61 KFGSLISDFHRNSESELVRCSDSESEEAKEGTE 93
>gi|254780900|ref|YP_003065313.1| homoserine dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 438
Score = 21.9 bits (45), Expect = 2.3, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 50 LLVDNLKSYLDKFGSLISDFHRNSESELVRCSDSESEEAKE 90
L + N + LDK S +SDF N L C E E ++E
Sbjct: 358 LTIRNFEGILDKITSQMSDF--NISLRLFSCPHQE-ENSQE 395
>gi|254780421|ref|YP_003064834.1| hypothetical protein CLIBASIA_01530 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 218
Score = 20.8 bits (42), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 28 QITSDELSDLTQRYDYLLLNKHLLVD 53
++ +D+L+ L RY L +LVD
Sbjct: 114 KVANDDLAPLAVRYAATLQAASILVD 139
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
str. psy62]
Length = 1828
Score = 20.8 bits (42), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 15/61 (24%)
Query: 3 EIMCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNK-HLLVDNLKSYLDK 61
E++C +A+ S + + L+D +++ L+N+ HLL+D L S + K
Sbjct: 814 ELLCTTFAQRNDSFV--------------NALADNQSKFENNLVNQSHLLLDKLSSDIQK 859
Query: 62 F 62
Sbjct: 860 L 860
>gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 452
Score = 20.0 bits (40), Expect = 9.1, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 20 LDFASDSDQITSDELSDLTQRYDYLLLNKHLLVD 53
+D+ D + + D +D T+RY L N + V+
Sbjct: 166 IDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVE 199
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.311 0.129 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,321
Number of Sequences: 1233
Number of extensions: 2022
Number of successful extensions: 10
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 93
length of database: 328,796
effective HSP length: 60
effective length of query: 33
effective length of database: 254,816
effective search space: 8408928
effective search space used: 8408928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 31 (16.5 bits)