Query         gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Mon May 30 05:49:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781082.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK04180 pyridoxine biosynthes  62.8      10 0.00026   19.8   3.5   59   20-83    154-212 (293)
  2 KOG3707 consensus               61.3     4.2 0.00011   22.0   1.3   74   14-97    166-244 (844)
  3 cd04727 pdxS PdxS is a subunit  56.0      14 0.00035   19.0   3.3   59   20-83    145-203 (283)
  4 pfam01680 SOR_SNZ SOR/SNZ fami  50.0      22 0.00057   17.8   3.5   57   20-81    152-208 (209)
  5 cd03133 GATase1_ES1 Type 1 glu  40.2     9.9 0.00025   19.8   0.5   32   17-48     56-87  (213)
  6 PRK08491 NADH dehydrogenase su  38.1      12 0.00031   19.3   0.6   15   91-105   176-190 (263)
  7 PRK11780 isoprenoid biosynthes  37.9      11 0.00029   19.5   0.5   32   17-48     59-90  (217)
  8 COG3155 ElbB Uncharacterized p  37.4      13 0.00033   19.2   0.7   34   15-48     57-90  (217)
  9 TIGR01819 F420_cofD LPPG:Fo 2-  31.9      42  0.0011   16.2   2.6   41    9-49    196-263 (359)
 10 pfam08891 YfcL YfcL protein. T  31.0      50  0.0013   15.7   3.2   16   55-70     68-83  (85)
 11 KOG4816 consensus               30.5      12  0.0003   19.4  -0.4   19   70-90      3-21  (98)
 12 KOG0293 consensus               30.1      52  0.0013   15.6   4.1   78   10-89     94-203 (519)
 13 smart00427 H2B Histone H2B.     26.7      36 0.00093   16.5   1.5   13   59-71     29-41  (89)
 14 KOG3111 consensus               26.1      32  0.0008   16.9   1.1   56   20-76     51-112 (224)
 15 pfam05361 PP1_inhibitor PKC-ac  25.5      63  0.0016   15.2   4.2   41   37-77     81-122 (145)
 16 COG0214 SNZ1 Pyridoxine biosyn  22.4      73  0.0019   14.8   3.0   58   21-83    158-215 (296)
 17 TIGR02904 spore_ysxE spore coa  22.3      64  0.0016   15.1   2.1   82   17-108    95-194 (313)
 18 pfam09204 ColicinD Colicin D.   22.1      44  0.0011   16.1   1.2   15    9-23     23-37  (88)
 19 KOG4117 consensus               21.6      53  0.0013   15.6   1.6   25   30-54     32-56  (73)
 20 TIGR03084 conserved hypothetic  20.6      79   0.002   14.6   3.2   72    8-87     88-174 (253)

No 1  
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=62.82  E-value=10  Score=19.79  Aligned_cols=59  Identities=27%  Similarity=0.402  Sum_probs=39.7

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEHH
Q ss_conf             6799999834856113233305677768887873487512379999999999740865001199
Q gi|254781082|r   20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSLD   83 (108)
Q Consensus        20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsld   83 (108)
                      ..+|||.|..+.-++++..|..-..+. |-..-|+-...|    +|-...+-+..|||-||+-.
T Consensus       154 GnVveAVrH~R~i~~eI~~l~~~~~~e-l~~~Ak~~~ap~----elv~~v~~~grLPVvnFaAG  212 (293)
T PRK04180        154 GNVVEAVRHMRQINGEIRRLTSMSEDE-LMTAAKELGAPY----ELVKEVARLGRLPVVNFAAG  212 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHCCCH----HHHHHHHHHCCCCEEEECCC
T ss_conf             749999999999999999997699999-999999847768----99999998488762553257


No 2  
>KOG3707 consensus
Probab=61.32  E-value=4.2  Score=22.00  Aligned_cols=74  Identities=31%  Similarity=0.439  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH
Q ss_conf             88541567999998348561132333056777688878734-----8751237999999999974086500119999999
Q gi|254781082|r   14 YWRLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKN-----GSSDYSFVNDLWERLKYLRDLPVYNFSLDYVSRF   88 (108)
Q Consensus        14 ywrlernsivealrkakpsmsdlamlsveerdailddlekn-----gssdysfvndlwerlkylrdlpvynfsldyvsrf   88 (108)
                      +||+.-.++.|+         |..-||-+|+. .+|+|-+.     |--|++.|..|+.|---.-|.|||.-.--+|+..
T Consensus       166 WWr~~~g~~le~---------d~k~Lse~E~~-~iD~l~d~~A~pagl~d~~Vv~sLY~rGLiYfDVPvy~~Dri~v~pL  235 (844)
T KOG3707         166 WWRVCLGNFLEE---------DFKKLSEDEMA-TIDKLCDEEANPAGLFDPEVVKSLYQRGLIYFDVPVYQDDRIKVSPL  235 (844)
T ss_pred             HHHHHHHHHHHH---------HHHHCCHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCEEEECCH
T ss_conf             665424663199---------88743998888-89999732788444569899999987773898335456873640530


Q ss_pred             HHHHHHHHH
Q ss_conf             986200146
Q gi|254781082|r   89 HSFVSDEVA   97 (108)
Q Consensus        89 hsfvsdeva   97 (108)
                      ..||+..|-
T Consensus       236 ~gFvmNRv~  244 (844)
T KOG3707         236 EGFVMNRVY  244 (844)
T ss_pred             HHHHHHCCC
T ss_conf             334540232


No 3  
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP,  present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=55.98  E-value=14  Score=18.97  Aligned_cols=59  Identities=24%  Similarity=0.381  Sum_probs=38.1

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEHH
Q ss_conf             6799999834856113233305677768887873487512379999999999740865001199
Q gi|254781082|r   20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSLD   83 (108)
Q Consensus        20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsld   83 (108)
                      ..++||.|..+.-++++..|..-..+.+ -..-|+-...|    +|-...+-+..|||-||+-.
T Consensus       145 GnVveAVrH~R~i~~eI~~l~~~~~~el-~~~Ak~~~ap~----elv~~v~~~grLPVvnFaAG  203 (283)
T cd04727         145 GNVVEAVRHMRAVNGEIRKLQSMSEEEL-YAVAKEIQAPY----ELVKETAKLGRLPVVNFAAG  203 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHCCCH----HHHHHHHHHCCCCEEEECCC
T ss_conf             6699999999999999999977999999-99999867758----99999999789763664267


No 4  
>pfam01680 SOR_SNZ SOR/SNZ family. Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis. This family was formerly known as UPF0019.
Probab=49.98  E-value=22  Score=17.78  Aligned_cols=57  Identities=28%  Similarity=0.426  Sum_probs=38.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             67999998348561132333056777688878734875123799999999997408650011
Q gi|254781082|r   20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFS   81 (108)
Q Consensus        20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfs   81 (108)
                      ..++||.|..+.-+++...|..-..|. |-..-|+-...|    +|-...+-+..|||-||+
T Consensus       152 GnVvEAVrH~R~i~~eI~~l~~~~~~e-l~~~Ak~~~ap~----eLv~~~~~~grLPVvnFa  208 (209)
T pfam01680       152 GNVVEAVRHMRLMNGEIRRLQNMSEDE-LYTVAKELAAPY----ELVKQVAELGKLPVVNFA  208 (209)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHCCCH----HHHHHHHHHCCCCCCCCC
T ss_conf             759999999999999999997699999-999999879899----999999997899855578


No 5  
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1.  The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=40.17  E-value=9.9  Score=19.83  Aligned_cols=32  Identities=38%  Similarity=0.525  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             41567999998348561132333056777688
Q gi|254781082|r   17 LERNSIVEALRKAKPSMSDLAMLSVEERDAIL   48 (108)
Q Consensus        17 lernsivealrkakpsmsdlamlsveerdail   48 (108)
                      -.||-.+|+-|-|.-...||+-+.+++-||++
T Consensus        56 e~RNVLvESARIaRG~I~~l~~~~~~d~DaLi   87 (213)
T cd03133          56 ESRNVLVESARIARGNIKDLAKLKAADFDALI   87 (213)
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHCCHHHCCEEE
T ss_conf             01778989988762585564569986789899


No 6  
>PRK08491 NADH dehydrogenase subunit C; Provisional
Probab=38.08  E-value=12  Score=19.33  Aligned_cols=15  Identities=53%  Similarity=0.877  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             620014677565443
Q gi|254781082|r   91 FVSDEVAVWYEVTKE  105 (108)
Q Consensus        91 fvsdevavwyevtke  105 (108)
                      .-.||.|-||||.|-
T Consensus       176 L~GDEfA~WYEVDKI  190 (263)
T PRK08491        176 LKGDEFAQWYEVDKI  190 (263)
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             885044555124655


No 7  
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=37.91  E-value=11  Score=19.46  Aligned_cols=32  Identities=38%  Similarity=0.496  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             41567999998348561132333056777688
Q gi|254781082|r   17 LERNSIVEALRKAKPSMSDLAMLSVEERDAIL   48 (108)
Q Consensus        17 lernsivealrkakpsmsdlamlsveerdail   48 (108)
                      -.||-.+|+-|-|.-...||+-+.+++-||++
T Consensus        59 e~RNVLvESARIaRG~I~~l~~~~~~d~DaLI   90 (217)
T PRK11780         59 ETRNVLVESARIARGEIKDLAEADAEDFDALI   90 (217)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHCCHHHCCEEE
T ss_conf             24778999988761586674569975678799


No 8  
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.37  E-value=13  Score=19.18  Aligned_cols=34  Identities=35%  Similarity=0.421  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             8541567999998348561132333056777688
Q gi|254781082|r   15 WRLERNSIVEALRKAKPSMSDLAMLSVEERDAIL   48 (108)
Q Consensus        15 wrlernsivealrkakpsmsdlamlsveerdail   48 (108)
                      -.-+||-.||.-|-|.-...+|+-..+||-||.+
T Consensus        57 m~EtRNVLvEsARIaRG~i~~l~~a~~e~~DALi   90 (217)
T COG3155          57 MPETRNVLVESARIARGEIRPLAQADAEELDALI   90 (217)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCEEE
T ss_conf             4034446887777761566623456976634266


No 9  
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115   This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii  but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=31.90  E-value=42  Score=16.20  Aligned_cols=41  Identities=29%  Similarity=0.456  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHH-------------------HHHHHHHHCC--------CCHHHHHHHHHHHHHHHHH
Q ss_conf             348888854156-------------------7999998348--------5611323330567776888
Q gi|254781082|r    9 REFIEYWRLERN-------------------SIVEALRKAK--------PSMSDLAMLSVEERDAILD   49 (108)
Q Consensus         9 refieywrlern-------------------sivealrkak--------psmsdlamlsveerdaild   49 (108)
                      -.|-|||-.+|.                   ..+||+++++        |-.|=.+||||+.--..|-
T Consensus       196 ~HFQefWV~~rg~v~v~dV~f~G~e~A~~a~~a~EAi~~~~~vligPSNPvtSIGpILal~Gire~Lr  263 (359)
T TIGR01819       196 MHFQEFWVRRRGDVEVEDVEFRGAEKAKAAPEAIEAIRDADVVLIGPSNPVTSIGPILALPGIREALR  263 (359)
T ss_pred             EECCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCHHHCCHHHHHHHHH
T ss_conf             30012532037996401366406533668878999860599899778668111322327256899998


No 10 
>pfam08891 YfcL YfcL protein. This family of proteins are functionally uncharacterized. THey are related to the short YfcL protein from E. coli.
Probab=30.96  E-value=50  Score=15.73  Aligned_cols=16  Identities=38%  Similarity=0.922  Sum_probs=13.5

Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             8751237999999999
Q gi|254781082|r   55 GSSDYSFVNDLWERLK   70 (108)
Q Consensus        55 gssdysfvndlwerlk   70 (108)
                      ...|+..|+++|.+|.
T Consensus        68 sp~D~~lV~~~W~~L~   83 (85)
T pfam08891        68 SPADQALVNNLWQQLQ   83 (85)
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             8777999999999987


No 11 
>KOG4816 consensus
Probab=30.50  E-value=12  Score=19.41  Aligned_cols=19  Identities=58%  Similarity=0.997  Sum_probs=12.6

Q ss_pred             HHHHHCCCCCEEHHHHHHHHH
Q ss_conf             997408650011999999998
Q gi|254781082|r   70 KYLRDLPVYNFSLDYVSRFHS   90 (108)
Q Consensus        70 kylrdlpvynfsldyvsrfhs   90 (108)
                      .+|.+|||||-|  -.||||.
T Consensus         3 dfLkgLPvynks--NFSrfh~   21 (98)
T KOG4816           3 DFLKGLPVYNKS--NFSRFHP   21 (98)
T ss_pred             HHHCCCCCCCCC--CCCCCCC
T ss_conf             444578765733--2110288


No 12 
>KOG0293 consensus
Probab=30.10  E-value=52  Score=15.65  Aligned_cols=78  Identities=36%  Similarity=0.425  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHC----------CCCHHHHH-----------------HHHHHHHHHHHHHHHHCCCCCHH--
Q ss_conf             48888854156799999834----------85611323-----------------33056777688878734875123--
Q gi|254781082|r   10 EFIEYWRLERNSIVEALRKA----------KPSMSDLA-----------------MLSVEERDAILDDLEKNGSSDYS--   60 (108)
Q Consensus        10 efieywrlernsivealrka----------kpsmsdla-----------------mlsveerdailddlekngssdys--   60 (108)
                      -|.||.+  +++|-+|++..          |...-.||                 -..+.+|+..|+.|+|--+..--  
T Consensus        94 ~fLEf~k--~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP  171 (519)
T KOG0293          94 IFLEFLK--TGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLP  171 (519)
T ss_pred             HHHHHHH--HCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCHHHCCC
T ss_conf             9999985--15376654766352034555578899999887045520155211010101048999999986389765288


Q ss_pred             ---HHHHHHHHHHHHHHCCCCCEEHHHHHHHH
Q ss_conf             ---79999999999740865001199999999
Q gi|254781082|r   61 ---FVNDLWERLKYLRDLPVYNFSLDYVSRFH   89 (108)
Q Consensus        61 ---fvndlwerlkylrdlpvynfsldyvsrfh   89 (108)
                         .-.-|-..++|-||--||+-++|-+|-..
T Consensus       172 ~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~  203 (519)
T KOG0293         172 KRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLS  203 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             17899999999988776767752201333443


No 13 
>smart00427 H2B Histone H2B.
Probab=26.72  E-value=36  Score=16.54  Aligned_cols=13  Identities=54%  Similarity=0.887  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             2379999999999
Q gi|254781082|r   59 YSFVNDLWERLKY   71 (108)
Q Consensus        59 ysfvndlwerlky   71 (108)
                      -|||||+.||+-.
T Consensus        29 nsfv~diferIa~   41 (89)
T smart00427       29 NSFVNDIFERIAA   41 (89)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 14 
>KOG3111 consensus
Probab=26.05  E-value=32  Score=16.91  Aligned_cols=56  Identities=29%  Similarity=0.450  Sum_probs=38.7

Q ss_pred             HHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHCC
Q ss_conf             6799999834856--113233305677768887873487512379----99999999974086
Q gi|254781082|r   20 NSIVEALRKAKPS--MSDLAMLSVEERDAILDDLEKNGSSDYSFV----NDLWERLKYLRDLP   76 (108)
Q Consensus        20 nsivealrkakps--msdlamlsveerdailddlekngssdysfv----ndlwerlkylrdlp   76 (108)
                      ..+|++||+..+.  .-|..|. |++-..+.+++.|.|.|-|+|-    .+.-+-.+++|..-
T Consensus        51 ~pvV~slr~~~~~~~ffD~HmM-V~~Peq~v~~~a~agas~~tfH~E~~q~~~~lv~~ir~~g  112 (224)
T KOG3111          51 PPVVESLRKHTGADPFFDVHMM-VENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKG  112 (224)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEE-ECCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCC
T ss_conf             1889999852588852367876-4698887679986477569998643257899999999749


No 15 
>pfam05361 PP1_inhibitor PKC-activated protein phosphatase-1 inhibitor. Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction.
Probab=25.52  E-value=63  Score=15.16  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=29.5

Q ss_pred             HHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             3330567776-8887873487512379999999999740865
Q gi|254781082|r   37 AMLSVEERDA-ILDDLEKNGSSDYSFVNDLWERLKYLRDLPV   77 (108)
Q Consensus        37 amlsveerda-ilddlekngssdysfvndlwerlkylrdlpv   77 (108)
                      -|-|-|+|-. +-.-|..-++..-.|+++|-.||+-||.++-
T Consensus        81 eL~sdEeR~~kLq~lL~~C~kpTE~FI~eLL~rlkglrKls~  122 (145)
T pfam05361        81 DLPSDEERTRKLQAILQSCSNPTEVFIRELLQKLKGLRKQSE  122 (145)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             278689999999999987589708999999999886662475


No 16 
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=22.41  E-value=73  Score=14.81  Aligned_cols=58  Identities=28%  Similarity=0.394  Sum_probs=32.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEHH
Q ss_conf             799999834856113233305677768887873487512379999999999740865001199
Q gi|254781082|r   21 SIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSLD   83 (108)
Q Consensus        21 sivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsld   83 (108)
                      .|+||.|..+--+++..-+.--..|- |...-|+-...|    +|-...+-+..|||-||.-.
T Consensus       158 nv~eAVrHmr~i~~eI~~l~~~~ede-l~~~Ak~~~~p~----elv~~~~~~grLPVvnFAAG  215 (296)
T COG0214         158 NVVEAVRHMRKINGEIRRLQSMTEDE-LYVVAKELQAPY----ELVKEVAKLGRLPVVNFAAG  215 (296)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHCCHH----HHHHHHHHHCCCCEEEECCC
T ss_conf             49999999999999999987368889-999998757829----99999998398874742256


No 17 
>TIGR02904 spore_ysxE spore coat protein YsxE; InterPro: IPR014253   Members of this entry, which includes the Bacillus subtilis protein YsxE, are found only in the family Bacillaceae, part of the the endospore-forming group within the Firmicutes. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat and is a homologue of CotS (IPR014255 from INTERPRO)..
Probab=22.27  E-value=64  Score=15.13  Aligned_cols=82  Identities=30%  Similarity=0.528  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---------HHCCCCCEEHHH
Q ss_conf             41567999998348561132333---056777688878734875123799999999997---------408650011999
Q gi|254781082|r   17 LERNSIVEALRKAKPSMSDLAML---SVEERDAILDDLEKNGSSDYSFVNDLWERLKYL---------RDLPVYNFSLDY   84 (108)
Q Consensus        17 lernsivealrkakpsmsdlaml---sveerdailddlekngssdysfvndlwerlkyl---------rdlpvynfsldy   84 (108)
                      -+||++++..      |..||.|   ++.+-.+--+++.+    +|.-..+-|++-+-.         +.-=.--|-|-+
T Consensus        95 ~~~~~~~~~~------f~~La~lH~~T~kt~~~~~E~~~~----~ye~~~~~W~~~~~~~e~fi~~~E~~~YMSPFeL~~  164 (313)
T TIGR02904        95 EERNEQHEKM------FRELALLHRKTVKTEEVTEEELKK----HYERTKSRWEREKEVLEEFIVEAEAKWYMSPFELQA  164 (313)
T ss_pred             CCHHHHHHHH------HHHHHHHHHHHHHHCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             6567899999------999999866643110112888888----888778875101779999999998522888589999


Q ss_pred             HHHHHH------HHHHHHHHHHHHHHHHCC
Q ss_conf             999998------620014677565443129
Q gi|254781082|r   85 VSRFHS------FVSDEVAVWYEVTKEKKK  108 (108)
Q Consensus        85 vsrfhs------fvsdevavwyevtkekkk  108 (108)
                      .+-||.      |.......|+|-+||+++
T Consensus       165 c~yY~~v~~A~~fa~~~L~~W~E~~~e~~~  194 (313)
T TIGR02904       165 CTYYHEVMRAAEFAKNKLEDWHEATKEKES  194 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998778999999999888899875220031


No 18 
>pfam09204 ColicinD Colicin D. Colicin D, which is synthesized by various prokaryotes, adopts an antiparallel four helical bundle fold: the helices are tightly packed, forming a compact cylindrical molecule. The protein specifically cleaves the anticodon loop of all four tRNA-Arg isoacceptors, thereby inactivating prokaryotic protein synthesis and leading to cell death.
Probab=22.08  E-value=44  Score=16.08  Aligned_cols=15  Identities=33%  Similarity=0.771  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             348888854156799
Q gi|254781082|r    9 REFIEYWRLERNSIV   23 (108)
Q Consensus         9 refieywrlernsiv   23 (108)
                      ..|||.||.||.+-.
T Consensus        23 e~~~elWriEr~~~~   37 (88)
T pfam09204        23 EAICELWRVERRRLY   37 (88)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999766323


No 19 
>KOG4117 consensus
Probab=21.58  E-value=53  Score=15.62  Aligned_cols=25  Identities=36%  Similarity=0.501  Sum_probs=19.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8561132333056777688878734
Q gi|254781082|r   30 KPSMSDLAMLSVEERDAILDDLEKN   54 (108)
Q Consensus        30 kpsmsdlamlsveerdailddlekn   54 (108)
                      -..|||-..-....-..-.||||||
T Consensus        32 FQtMSDQII~RiDDM~~riDDLEKn   56 (73)
T KOG4117          32 FQTMSDQIIGRIDDMSSRIDDLEKN   56 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9888899998886343536889988


No 20 
>TIGR03084 conserved hypothetical protein TIGR03084. This family, like Pfam family pfam07398, belongs to the larger set of probable enzymes modeled by TIGRFAMs family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized.
Probab=20.56  E-value=79  Score=14.58  Aligned_cols=72  Identities=26%  Similarity=0.418  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHH------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             23488888541567999998348---------561132333056------777688878734875123799999999997
Q gi|254781082|r    8 NREFIEYWRLERNSIVEALRKAK---------PSMSDLAMLSVE------ERDAILDDLEKNGSSDYSFVNDLWERLKYL   72 (108)
Q Consensus         8 nrefieywrlernsivealrkak---------psmsdlamlsve------erdailddlekngssdysfvndlwerlkyl   72 (108)
                      ..+.++.||-+|...++||+.+-         |+||-..|.+--      .-..|.|-|...-..        -+||+-+
T Consensus        88 ~~~Ll~~Wr~~r~~l~~al~~~dp~~rvpW~Gp~Msa~S~aTARlMETWAHGqDI~DaLGv~r~~--------tdRlrhI  159 (253)
T TIGR03084        88 PAELLARWRAGRAALAEALRAAPPGARVPWFGPPMSAASMATARLMETWAHGQDVADALGVTREP--------TDRLRHI  159 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------CCCHHHH
T ss_conf             99999999999999999998289888543349996889999999999986048899980998898--------5019899


Q ss_pred             HHCCCCCEEHHHHHH
Q ss_conf             408650011999999
Q gi|254781082|r   73 RDLPVYNFSLDYVSR   87 (108)
Q Consensus        73 rdlpvynfsldyvsr   87 (108)
                      -.|-|-.|..-|..|
T Consensus       160 a~lGv~T~~~sy~~r  174 (253)
T TIGR03084       160 AHLGVRTRDFAFRIH  174 (253)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999975117889974


Done!