Query gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 108 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Mon May 30 05:49:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781082.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK04180 pyridoxine biosynthes 62.8 10 0.00026 19.8 3.5 59 20-83 154-212 (293) 2 KOG3707 consensus 61.3 4.2 0.00011 22.0 1.3 74 14-97 166-244 (844) 3 cd04727 pdxS PdxS is a subunit 56.0 14 0.00035 19.0 3.3 59 20-83 145-203 (283) 4 pfam01680 SOR_SNZ SOR/SNZ fami 50.0 22 0.00057 17.8 3.5 57 20-81 152-208 (209) 5 cd03133 GATase1_ES1 Type 1 glu 40.2 9.9 0.00025 19.8 0.5 32 17-48 56-87 (213) 6 PRK08491 NADH dehydrogenase su 38.1 12 0.00031 19.3 0.6 15 91-105 176-190 (263) 7 PRK11780 isoprenoid biosynthes 37.9 11 0.00029 19.5 0.5 32 17-48 59-90 (217) 8 COG3155 ElbB Uncharacterized p 37.4 13 0.00033 19.2 0.7 34 15-48 57-90 (217) 9 TIGR01819 F420_cofD LPPG:Fo 2- 31.9 42 0.0011 16.2 2.6 41 9-49 196-263 (359) 10 pfam08891 YfcL YfcL protein. T 31.0 50 0.0013 15.7 3.2 16 55-70 68-83 (85) 11 KOG4816 consensus 30.5 12 0.0003 19.4 -0.4 19 70-90 3-21 (98) 12 KOG0293 consensus 30.1 52 0.0013 15.6 4.1 78 10-89 94-203 (519) 13 smart00427 H2B Histone H2B. 26.7 36 0.00093 16.5 1.5 13 59-71 29-41 (89) 14 KOG3111 consensus 26.1 32 0.0008 16.9 1.1 56 20-76 51-112 (224) 15 pfam05361 PP1_inhibitor PKC-ac 25.5 63 0.0016 15.2 4.2 41 37-77 81-122 (145) 16 COG0214 SNZ1 Pyridoxine biosyn 22.4 73 0.0019 14.8 3.0 58 21-83 158-215 (296) 17 TIGR02904 spore_ysxE spore coa 22.3 64 0.0016 15.1 2.1 82 17-108 95-194 (313) 18 pfam09204 ColicinD Colicin D. 22.1 44 0.0011 16.1 1.2 15 9-23 23-37 (88) 19 KOG4117 consensus 21.6 53 0.0013 15.6 1.6 25 30-54 32-56 (73) 20 TIGR03084 conserved hypothetic 20.6 79 0.002 14.6 3.2 72 8-87 88-174 (253) No 1 >PRK04180 pyridoxine biosynthesis protein; Provisional Probab=62.82 E-value=10 Score=19.79 Aligned_cols=59 Identities=27% Similarity=0.402 Sum_probs=39.7 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEHH Q ss_conf 6799999834856113233305677768887873487512379999999999740865001199 Q gi|254781082|r 20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSLD 83 (108) Q Consensus 20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsld 83 (108) ..+|||.|..+.-++++..|..-..+. |-..-|+-...| +|-...+-+..|||-||+-. T Consensus 154 GnVveAVrH~R~i~~eI~~l~~~~~~e-l~~~Ak~~~ap~----elv~~v~~~grLPVvnFaAG 212 (293) T PRK04180 154 GNVVEAVRHMRQINGEIRRLTSMSEDE-LMTAAKELGAPY----ELVKEVARLGRLPVVNFAAG 212 (293) T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHCCCH----HHHHHHHHHCCCCEEEECCC T ss_conf 749999999999999999997699999-999999847768----99999998488762553257 No 2 >KOG3707 consensus Probab=61.32 E-value=4.2 Score=22.00 Aligned_cols=74 Identities=31% Similarity=0.439 Sum_probs=54.7 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH Q ss_conf 88541567999998348561132333056777688878734-----8751237999999999974086500119999999 Q gi|254781082|r 14 YWRLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKN-----GSSDYSFVNDLWERLKYLRDLPVYNFSLDYVSRF 88 (108) Q Consensus 14 ywrlernsivealrkakpsmsdlamlsveerdailddlekn-----gssdysfvndlwerlkylrdlpvynfsldyvsrf 88 (108) +||+.-.++.|+ |..-||-+|+. .+|+|-+. |--|++.|..|+.|---.-|.|||.-.--+|+.. T Consensus 166 WWr~~~g~~le~---------d~k~Lse~E~~-~iD~l~d~~A~pagl~d~~Vv~sLY~rGLiYfDVPvy~~Dri~v~pL 235 (844) T KOG3707 166 WWRVCLGNFLEE---------DFKKLSEDEMA-TIDKLCDEEANPAGLFDPEVVKSLYQRGLIYFDVPVYQDDRIKVSPL 235 (844) T ss_pred HHHHHHHHHHHH---------HHHHCCHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCEEEECCH T ss_conf 665424663199---------88743998888-89999732788444569899999987773898335456873640530 Q ss_pred HHHHHHHHH Q ss_conf 986200146 Q gi|254781082|r 89 HSFVSDEVA 97 (108) Q Consensus 89 hsfvsdeva 97 (108) ..||+..|- T Consensus 236 ~gFvmNRv~ 244 (844) T KOG3707 236 EGFVMNRVY 244 (844) T ss_pred HHHHHHCCC T ss_conf 334540232 No 3 >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. Probab=55.98 E-value=14 Score=18.97 Aligned_cols=59 Identities=24% Similarity=0.381 Sum_probs=38.1 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEHH Q ss_conf 6799999834856113233305677768887873487512379999999999740865001199 Q gi|254781082|r 20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSLD 83 (108) Q Consensus 20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsld 83 (108) ..++||.|..+.-++++..|..-..+.+ -..-|+-...| +|-...+-+..|||-||+-. T Consensus 145 GnVveAVrH~R~i~~eI~~l~~~~~~el-~~~Ak~~~ap~----elv~~v~~~grLPVvnFaAG 203 (283) T cd04727 145 GNVVEAVRHMRAVNGEIRKLQSMSEEEL-YAVAKEIQAPY----ELVKETAKLGRLPVVNFAAG 203 (283) T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHCCCH----HHHHHHHHHCCCCEEEECCC T ss_conf 6699999999999999999977999999-99999867758----99999999789763664267 No 4 >pfam01680 SOR_SNZ SOR/SNZ family. Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis. This family was formerly known as UPF0019. Probab=49.98 E-value=22 Score=17.78 Aligned_cols=57 Identities=28% Similarity=0.426 Sum_probs=38.4 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 67999998348561132333056777688878734875123799999999997408650011 Q gi|254781082|r 20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFS 81 (108) Q Consensus 20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfs 81 (108) ..++||.|..+.-+++...|..-..|. |-..-|+-...| +|-...+-+..|||-||+ T Consensus 152 GnVvEAVrH~R~i~~eI~~l~~~~~~e-l~~~Ak~~~ap~----eLv~~~~~~grLPVvnFa 208 (209) T pfam01680 152 GNVVEAVRHMRLMNGEIRRLQNMSEDE-LYTVAKELAAPY----ELVKQVAELGKLPVVNFA 208 (209) T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHCCCH----HHHHHHHHHCCCCCCCCC T ss_conf 759999999999999999997699999-999999879899----999999997899855578 No 5 >cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis. Probab=40.17 E-value=9.9 Score=19.83 Aligned_cols=32 Identities=38% Similarity=0.525 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 41567999998348561132333056777688 Q gi|254781082|r 17 LERNSIVEALRKAKPSMSDLAMLSVEERDAIL 48 (108) Q Consensus 17 lernsivealrkakpsmsdlamlsveerdail 48 (108) -.||-.+|+-|-|.-...||+-+.+++-||++ T Consensus 56 e~RNVLvESARIaRG~I~~l~~~~~~d~DaLi 87 (213) T cd03133 56 ESRNVLVESARIARGNIKDLAKLKAADFDALI 87 (213) T ss_pred CHHHHHHHHHHHHCCCCCCHHHCCHHHCCEEE T ss_conf 01778989988762585564569986789899 No 6 >PRK08491 NADH dehydrogenase subunit C; Provisional Probab=38.08 E-value=12 Score=19.33 Aligned_cols=15 Identities=53% Similarity=0.877 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 620014677565443 Q gi|254781082|r 91 FVSDEVAVWYEVTKE 105 (108) Q Consensus 91 fvsdevavwyevtke 105 (108) .-.||.|-||||.|- T Consensus 176 L~GDEfA~WYEVDKI 190 (263) T PRK08491 176 LKGDEFAQWYEVDKI 190 (263) T ss_pred CCCCHHHHHHHHHHH T ss_conf 885044555124655 No 7 >PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional Probab=37.91 E-value=11 Score=19.46 Aligned_cols=32 Identities=38% Similarity=0.496 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 41567999998348561132333056777688 Q gi|254781082|r 17 LERNSIVEALRKAKPSMSDLAMLSVEERDAIL 48 (108) Q Consensus 17 lernsivealrkakpsmsdlamlsveerdail 48 (108) -.||-.+|+-|-|.-...||+-+.+++-||++ T Consensus 59 e~RNVLvESARIaRG~I~~l~~~~~~d~DaLI 90 (217) T PRK11780 59 ETRNVLVESARIARGEIKDLAEADAEDFDALI 90 (217) T ss_pred HHHHHHHHHHHHHCCCCCCHHHCCHHHCCEEE T ss_conf 24778999988761586674569975678799 No 8 >COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Probab=37.37 E-value=13 Score=19.18 Aligned_cols=34 Identities=35% Similarity=0.421 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 8541567999998348561132333056777688 Q gi|254781082|r 15 WRLERNSIVEALRKAKPSMSDLAMLSVEERDAIL 48 (108) Q Consensus 15 wrlernsivealrkakpsmsdlamlsveerdail 48 (108) -.-+||-.||.-|-|.-...+|+-..+||-||.+ T Consensus 57 m~EtRNVLvEsARIaRG~i~~l~~a~~e~~DALi 90 (217) T COG3155 57 MPETRNVLVESARIARGEIRPLAQADAEELDALI 90 (217) T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCEEE T ss_conf 4034446887777761566623456976634266 No 9 >TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115 This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. . Probab=31.90 E-value=42 Score=16.20 Aligned_cols=41 Identities=29% Similarity=0.456 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHH-------------------HHHHHHHHCC--------CCHHHHHHHHHHHHHHHHH Q ss_conf 348888854156-------------------7999998348--------5611323330567776888 Q gi|254781082|r 9 REFIEYWRLERN-------------------SIVEALRKAK--------PSMSDLAMLSVEERDAILD 49 (108) Q Consensus 9 refieywrlern-------------------sivealrkak--------psmsdlamlsveerdaild 49 (108) -.|-|||-.+|. ..+||+++++ |-.|=.+||||+.--..|- T Consensus 196 ~HFQefWV~~rg~v~v~dV~f~G~e~A~~a~~a~EAi~~~~~vligPSNPvtSIGpILal~Gire~Lr 263 (359) T TIGR01819 196 MHFQEFWVRRRGDVEVEDVEFRGAEKAKAAPEAIEAIRDADVVLIGPSNPVTSIGPILALPGIREALR 263 (359) T ss_pred EECCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCHHHCCHHHHHHHHH T ss_conf 30012532037996401366406533668878999860599899778668111322327256899998 No 10 >pfam08891 YfcL YfcL protein. This family of proteins are functionally uncharacterized. THey are related to the short YfcL protein from E. coli. Probab=30.96 E-value=50 Score=15.73 Aligned_cols=16 Identities=38% Similarity=0.922 Sum_probs=13.5 Q ss_pred CCCCHHHHHHHHHHHH Q ss_conf 8751237999999999 Q gi|254781082|r 55 GSSDYSFVNDLWERLK 70 (108) Q Consensus 55 gssdysfvndlwerlk 70 (108) ...|+..|+++|.+|. T Consensus 68 sp~D~~lV~~~W~~L~ 83 (85) T pfam08891 68 SPADQALVNNLWQQLQ 83 (85) T ss_pred CHHHHHHHHHHHHHHH T ss_conf 8777999999999987 No 11 >KOG4816 consensus Probab=30.50 E-value=12 Score=19.41 Aligned_cols=19 Identities=58% Similarity=0.997 Sum_probs=12.6 Q ss_pred HHHHHCCCCCEEHHHHHHHHH Q ss_conf 997408650011999999998 Q gi|254781082|r 70 KYLRDLPVYNFSLDYVSRFHS 90 (108) Q Consensus 70 kylrdlpvynfsldyvsrfhs 90 (108) .+|.+|||||-| -.||||. T Consensus 3 dfLkgLPvynks--NFSrfh~ 21 (98) T KOG4816 3 DFLKGLPVYNKS--NFSRFHP 21 (98) T ss_pred HHHCCCCCCCCC--CCCCCCC T ss_conf 444578765733--2110288 No 12 >KOG0293 consensus Probab=30.10 E-value=52 Score=15.65 Aligned_cols=78 Identities=36% Similarity=0.425 Sum_probs=48.9 Q ss_pred HHHHHHHHHHHHHHHHHHHC----------CCCHHHHH-----------------HHHHHHHHHHHHHHHHCCCCCHH-- Q ss_conf 48888854156799999834----------85611323-----------------33056777688878734875123-- Q gi|254781082|r 10 EFIEYWRLERNSIVEALRKA----------KPSMSDLA-----------------MLSVEERDAILDDLEKNGSSDYS-- 60 (108) Q Consensus 10 efieywrlernsivealrka----------kpsmsdla-----------------mlsveerdailddlekngssdys-- 60 (108) -|.||.+ +++|-+|++.. |...-.|| -..+.+|+..|+.|+|--+..-- T Consensus 94 ~fLEf~k--~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP 171 (519) T KOG0293 94 IFLEFLK--TGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLP 171 (519) T ss_pred HHHHHHH--HCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCHHHCCC T ss_conf 9999985--15376654766352034555578899999887045520155211010101048999999986389765288 Q ss_pred ---HHHHHHHHHHHHHHCCCCCEEHHHHHHHH Q ss_conf ---79999999999740865001199999999 Q gi|254781082|r 61 ---FVNDLWERLKYLRDLPVYNFSLDYVSRFH 89 (108) Q Consensus 61 ---fvndlwerlkylrdlpvynfsldyvsrfh 89 (108) .-.-|-..++|-||--||+-++|-+|-.. T Consensus 172 ~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~ 203 (519) T KOG0293 172 KRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLS 203 (519) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 17899999999988776767752201333443 No 13 >smart00427 H2B Histone H2B. Probab=26.72 E-value=36 Score=16.54 Aligned_cols=13 Identities=54% Similarity=0.887 Sum_probs=10.5 Q ss_pred HHHHHHHHHHHHH Q ss_conf 2379999999999 Q gi|254781082|r 59 YSFVNDLWERLKY 71 (108) Q Consensus 59 ysfvndlwerlky 71 (108) -|||||+.||+-. T Consensus 29 nsfv~diferIa~ 41 (89) T smart00427 29 NSFVNDIFERIAA 41 (89) T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 14 >KOG3111 consensus Probab=26.05 E-value=32 Score=16.91 Aligned_cols=56 Identities=29% Similarity=0.450 Sum_probs=38.7 Q ss_pred HHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHCC Q ss_conf 6799999834856--113233305677768887873487512379----99999999974086 Q gi|254781082|r 20 NSIVEALRKAKPS--MSDLAMLSVEERDAILDDLEKNGSSDYSFV----NDLWERLKYLRDLP 76 (108) Q Consensus 20 nsivealrkakps--msdlamlsveerdailddlekngssdysfv----ndlwerlkylrdlp 76 (108) ..+|++||+..+. .-|..|. |++-..+.+++.|.|.|-|+|- .+.-+-.+++|..- T Consensus 51 ~pvV~slr~~~~~~~ffD~HmM-V~~Peq~v~~~a~agas~~tfH~E~~q~~~~lv~~ir~~g 112 (224) T KOG3111 51 PPVVESLRKHTGADPFFDVHMM-VENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKG 112 (224) T ss_pred HHHHHHHHHCCCCCCCEEEEEE-ECCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCC T ss_conf 1889999852588852367876-4698887679986477569998643257899999999749 No 15 >pfam05361 PP1_inhibitor PKC-activated protein phosphatase-1 inhibitor. Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction. Probab=25.52 E-value=63 Score=15.16 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=29.5 Q ss_pred HHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 3330567776-8887873487512379999999999740865 Q gi|254781082|r 37 AMLSVEERDA-ILDDLEKNGSSDYSFVNDLWERLKYLRDLPV 77 (108) Q Consensus 37 amlsveerda-ilddlekngssdysfvndlwerlkylrdlpv 77 (108) -|-|-|+|-. +-.-|..-++..-.|+++|-.||+-||.++- T Consensus 81 eL~sdEeR~~kLq~lL~~C~kpTE~FI~eLL~rlkglrKls~ 122 (145) T pfam05361 81 DLPSDEERTRKLQAILQSCSNPTEVFIRELLQKLKGLRKQSE 122 (145) T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 278689999999999987589708999999999886662475 No 16 >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] Probab=22.41 E-value=73 Score=14.81 Aligned_cols=58 Identities=28% Similarity=0.394 Sum_probs=32.8 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEHH Q ss_conf 799999834856113233305677768887873487512379999999999740865001199 Q gi|254781082|r 21 SIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSLD 83 (108) Q Consensus 21 sivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsld 83 (108) .|+||.|..+--+++..-+.--..|- |...-|+-...| +|-...+-+..|||-||.-. T Consensus 158 nv~eAVrHmr~i~~eI~~l~~~~ede-l~~~Ak~~~~p~----elv~~~~~~grLPVvnFAAG 215 (296) T COG0214 158 NVVEAVRHMRKINGEIRRLQSMTEDE-LYVVAKELQAPY----ELVKEVAKLGRLPVVNFAAG 215 (296) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHCCHH----HHHHHHHHHCCCCEEEECCC T ss_conf 49999999999999999987368889-999998757829----99999998398874742256 No 17 >TIGR02904 spore_ysxE spore coat protein YsxE; InterPro: IPR014253 Members of this entry, which includes the Bacillus subtilis protein YsxE, are found only in the family Bacillaceae, part of the the endospore-forming group within the Firmicutes. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat and is a homologue of CotS (IPR014255 from INTERPRO).. Probab=22.27 E-value=64 Score=15.13 Aligned_cols=82 Identities=30% Similarity=0.528 Sum_probs=50.1 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---------HHCCCCCEEHHH Q ss_conf 41567999998348561132333---056777688878734875123799999999997---------408650011999 Q gi|254781082|r 17 LERNSIVEALRKAKPSMSDLAML---SVEERDAILDDLEKNGSSDYSFVNDLWERLKYL---------RDLPVYNFSLDY 84 (108) Q Consensus 17 lernsivealrkakpsmsdlaml---sveerdailddlekngssdysfvndlwerlkyl---------rdlpvynfsldy 84 (108) -+||++++.. |..||.| ++.+-.+--+++.+ +|.-..+-|++-+-. +.-=.--|-|-+ T Consensus 95 ~~~~~~~~~~------f~~La~lH~~T~kt~~~~~E~~~~----~ye~~~~~W~~~~~~~e~fi~~~E~~~YMSPFeL~~ 164 (313) T TIGR02904 95 EERNEQHEKM------FRELALLHRKTVKTEEVTEEELKK----HYERTKSRWEREKEVLEEFIVEAEAKWYMSPFELQA 164 (313) T ss_pred CCHHHHHHHH------HHHHHHHHHHHHHHCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 6567899999------999999866643110112888888----888778875101779999999998522888589999 Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHCC Q ss_conf 999998------620014677565443129 Q gi|254781082|r 85 VSRFHS------FVSDEVAVWYEVTKEKKK 108 (108) Q Consensus 85 vsrfhs------fvsdevavwyevtkekkk 108 (108) .+-||. |.......|+|-+||+++ T Consensus 165 c~yY~~v~~A~~fa~~~L~~W~E~~~e~~~ 194 (313) T TIGR02904 165 CTYYHEVMRAAEFAKNKLEDWHEATKEKES 194 (313) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 998778999999999888899875220031 No 18 >pfam09204 ColicinD Colicin D. Colicin D, which is synthesized by various prokaryotes, adopts an antiparallel four helical bundle fold: the helices are tightly packed, forming a compact cylindrical molecule. The protein specifically cleaves the anticodon loop of all four tRNA-Arg isoacceptors, thereby inactivating prokaryotic protein synthesis and leading to cell death. Probab=22.08 E-value=44 Score=16.08 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 348888854156799 Q gi|254781082|r 9 REFIEYWRLERNSIV 23 (108) Q Consensus 9 refieywrlernsiv 23 (108) ..|||.||.||.+-. T Consensus 23 e~~~elWriEr~~~~ 37 (88) T pfam09204 23 EAICELWRVERRRLY 37 (88) T ss_pred HHHHHHHHHHHHHCC T ss_conf 999999999766323 No 19 >KOG4117 consensus Probab=21.58 E-value=53 Score=15.62 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=19.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 8561132333056777688878734 Q gi|254781082|r 30 KPSMSDLAMLSVEERDAILDDLEKN 54 (108) Q Consensus 30 kpsmsdlamlsveerdailddlekn 54 (108) -..|||-..-....-..-.|||||| T Consensus 32 FQtMSDQII~RiDDM~~riDDLEKn 56 (73) T KOG4117 32 FQTMSDQIIGRIDDMSSRIDDLEKN 56 (73) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9888899998886343536889988 No 20 >TIGR03084 conserved hypothetical protein TIGR03084. This family, like Pfam family pfam07398, belongs to the larger set of probable enzymes modeled by TIGRFAMs family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized. Probab=20.56 E-value=79 Score=14.58 Aligned_cols=72 Identities=26% Similarity=0.418 Sum_probs=47.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHH------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 23488888541567999998348---------561132333056------777688878734875123799999999997 Q gi|254781082|r 8 NREFIEYWRLERNSIVEALRKAK---------PSMSDLAMLSVE------ERDAILDDLEKNGSSDYSFVNDLWERLKYL 72 (108) Q Consensus 8 nrefieywrlernsivealrkak---------psmsdlamlsve------erdailddlekngssdysfvndlwerlkyl 72 (108) ..+.++.||-+|...++||+.+- |+||-..|.+-- .-..|.|-|...-.. -+||+-+ T Consensus 88 ~~~Ll~~Wr~~r~~l~~al~~~dp~~rvpW~Gp~Msa~S~aTARlMETWAHGqDI~DaLGv~r~~--------tdRlrhI 159 (253) T TIGR03084 88 PAELLARWRAGRAALAEALRAAPPGARVPWFGPPMSAASMATARLMETWAHGQDVADALGVTREP--------TDRLRHI 159 (253) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------CCCHHHH T ss_conf 99999999999999999998289888543349996889999999999986048899980998898--------5019899 Q ss_pred HHCCCCCEEHHHHHH Q ss_conf 408650011999999 Q gi|254781082|r 73 RDLPVYNFSLDYVSR 87 (108) Q Consensus 73 rdlpvynfsldyvsr 87 (108) -.|-|-.|..-|..| T Consensus 160 a~lGv~T~~~sy~~r 174 (253) T TIGR03084 160 AHLGVRTRDFAFRIH 174 (253) T ss_pred HHHHHHHHHHHHHHC T ss_conf 999975117889974 Done!