Query         gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:15:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781082.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1uyra2 c.14.1.4 (A:1815-2218)  28.5      14   0.001   16.3   2.0   33    6-39    302-338 (404)
  2 d1vlua_ c.82.1.1 (A:) Gamma-gl  25.0      16  0.0011   16.0   1.7   32   21-52      4-35  (436)
  3 d1tzyb_ a.22.1.1 (B:) Histone   23.0      17  0.0012   15.8   1.6   13   59-71     31-43  (92)
  4 d1ad3a_ c.82.1.1 (A:) Aldehyde  19.1      27  0.0019   14.7   1.9   29   23-51      3-31  (446)
  5 d1j2na_ a.165.1.1 (A:) Myosin   15.5      25  0.0018   14.9   1.1   38   36-73     60-98  (99)
  6 d1o20a_ c.82.1.1 (A:) Gamma-gl  14.2      34  0.0025   14.1   1.5   29   22-50      3-31  (414)
  7 d2hqya2 d.108.1.4 (A:1-134) Hy  13.0      43  0.0031   13.5   1.7   29   39-67      7-38  (134)
  8 d1ghca_ a.4.5.13 (A:) Histone   10.5      42  0.0031   13.5   1.0   28   29-62      2-29  (75)
  9 d1s0pa_ a.192.1.1 (A:) N-termi   9.8      55   0.004   12.9   5.7   53   11-65     34-89  (176)
 10 d1xb4a1 a.4.5.54 (A:2-125) Vac   9.3      58  0.0042   12.7   1.7   22   38-59     83-104 (124)

No 1  
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.51  E-value=14  Score=16.29  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHH
Q ss_conf             1123488888541567999998----348561132333
Q gi|254781082|r    6 SRNREFIEYWRLERNSIVEALR----KAKPSMSDLAML   39 (108)
Q Consensus         6 srnrefieywrlernsivealr----kakpsmsdlaml   39 (108)
                      ...|.|. ||||+|--.-+.+.    .+.|.++...++
T Consensus       302 ~~tR~~~-~~~lrr~l~e~~~~~~~~~~~~~~~~~~~~  338 (404)
T d1uyra2         302 TEARRFF-FWRLRRRLNEEYLIKRLSHQVGEASRLEKI  338 (404)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTTTTCCSSCCHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             8859999-999999874999999999857777879999


No 2  
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.95  E-value=16  Score=16.01  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=23.9

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             79999983485611323330567776888787
Q gi|254781082|r   21 SIVEALRKAKPSMSDLAMLSVEERDAILDDLE   52 (108)
Q Consensus        21 sivealrkakpsmsdlamlsveerdailddle   52 (108)
                      ++-|..++||-....++-+|.++|+.||..+.
T Consensus         4 ~~e~~~~~Ak~A~~~l~~~s~~~R~~iL~~~a   35 (436)
T d1vlua_           4 SSQQIAKNARKAGNILKTISNEGRSDILYKIH   35 (436)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             79999999999999998699999999999999


No 3  
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=22.97  E-value=17  Score=15.84  Aligned_cols=13  Identities=54%  Similarity=0.841  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             2379999999999
Q gi|254781082|r   59 YSFVNDLWERLKY   71 (108)
Q Consensus        59 ysfvndlwerlky   71 (108)
                      -|||||+.||+--
T Consensus        31 nsfvndiferIa~   43 (92)
T d1tzyb_          31 NSFVNDIFERIAG   43 (92)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 4  
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.07  E-value=27  Score=14.69  Aligned_cols=29  Identities=17%  Similarity=0.250  Sum_probs=15.0

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998348561132333056777688878
Q gi|254781082|r   23 VEALRKAKPSMSDLAMLSVEERDAILDDL   51 (108)
Q Consensus        23 vealrkakpsmsdlamlsveerdailddl   51 (108)
                      -||+.+|+-.......+|+++|-.+|..+
T Consensus         3 ~~av~~Ar~Af~~w~~~s~~~R~~iL~~~   31 (446)
T d1ad3a_           3 SDTVKRAREAFNSGKTRSLQFRIQQLEAL   31 (446)
T ss_dssp             HHHHHHHHHHHHTTGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999999999862889999999999999


No 5  
>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein, CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=15.54  E-value=25  Score=14.88  Aligned_cols=38  Identities=32%  Similarity=0.367  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             23330567776-888787348751237999999999974
Q gi|254781082|r   36 LAMLSVEERDA-ILDDLEKNGSSDYSFVNDLWERLKYLR   73 (108)
Q Consensus        36 lamlsveerda-ilddlekngssdysfvndlwerlkylr   73 (108)
                      |.|-|.|+|-. +-.-|..-.+..-.|+++|-.|++-|+
T Consensus        60 Ldl~s~e~R~~~lq~lL~~c~kPtE~FI~eLL~klrgL~   98 (99)
T d1j2na_          60 LELESEEERSRKIQGLLKSCTNPTENFVQELLVKLRGLH   98 (99)
T ss_dssp             TCSSCSHHHHHHHHHHHTSSSSCSHHHHHHHHHHTSCSC
T ss_pred             HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             806875899999999997669986999999999998622


No 6  
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}
Probab=14.23  E-value=34  Score=14.06  Aligned_cols=29  Identities=14%  Similarity=0.295  Sum_probs=16.7

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999834856113233305677768887
Q gi|254781082|r   22 IVEALRKAKPSMSDLAMLSVEERDAILDD   50 (108)
Q Consensus        22 ivealrkakpsmsdlamlsveerdaildd   50 (108)
                      +.++.++|+-.......+|.++|.+||..
T Consensus         3 ~~~a~~~A~~Af~~w~~~s~~eR~~iL~k   31 (414)
T d1o20a_           3 LLEKAKKVREAWDVLRNATTREKNKAIKK   31 (414)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999999999862999999999999


No 7  
>d2hqya2 d.108.1.4 (A:1-134) Hypothetical protein BT3689 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=13.00  E-value=43  Score=13.50  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHH--HCCCCCHHHHHH-HHH
Q ss_conf             30567776888787--348751237999-999
Q gi|254781082|r   39 LSVEERDAILDDLE--KNGSSDYSFVND-LWE   67 (108)
Q Consensus        39 lsveerdailddle--kngssdysfvnd-lwe   67 (108)
                      ++.+.++.|-.=+.  ...+|||||.|- +|.
T Consensus         7 i~l~Dk~~~~~y~~~~~~~~sd~sF~Nl~~W~   38 (134)
T d2hqya2           7 ITLADRDTITAFTMKSDRRNCDLSFSNLCSWR   38 (134)
T ss_dssp             CCGGGHHHHHHHHTTSCCCCGGGCHHHHHHTH
T ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             88767999999985189861143398999988


No 8  
>d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.46  E-value=42  Score=13.53  Aligned_cols=28  Identities=29%  Similarity=0.364  Sum_probs=19.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             4856113233305677768887873487512379
Q gi|254781082|r   29 AKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFV   62 (108)
Q Consensus        29 akpsmsdlamlsveerdailddlekngssdysfv   62 (108)
                      |.|+++++-.      +||.+--|++|||-....
T Consensus         2 a~P~y~~MI~------eAI~al~er~GsS~~AI~   29 (75)
T d1ghca_           2 AGPSVTELIT------KAVSASKERKGLSLAALK   29 (75)
T ss_dssp             CSSSHHHHHH------HHHHHCSSSSCCTTSSGG
T ss_pred             CCCCHHHHHH------HHHHHCCCCCCCCHHHHH
T ss_conf             9988799999------999971888995999999


No 9  
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=9.85  E-value=55  Score=12.85  Aligned_cols=53  Identities=26%  Similarity=0.239  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             888885415679999983485611323330---5677768887873487512379999
Q gi|254781082|r   11 FIEYWRLERNSIVEALRKAKPSMSDLAMLS---VEERDAILDDLEKNGSSDYSFVNDL   65 (108)
Q Consensus        11 fieywrlernsivealrkakpsmsdlamls---veerdailddlekngssdysfvndl   65 (108)
                      +-+-+..+|.-|.-|-...||++.++..|-   -+.-.+|-+--|+|.+|.  |.|.|
T Consensus        34 v~~aF~~qr~~L~~a~~~kKP~~~~~~~ll~pl~~~i~~i~~~re~nR~s~--~fNHL   89 (176)
T d1s0pa_          34 LVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGKIRDSNRSSK--FFNNL   89 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHEECCCHHHHHHHTHHHHHHHHHHHHHHHTCTTCT--THHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHH
T ss_conf             999999999999999842798938999998999999999999987247981--46799


No 10 
>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.35  E-value=58  Score=12.74  Aligned_cols=22  Identities=23%  Similarity=0.135  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             3305677768887873487512
Q gi|254781082|r   38 MLSVEERDAILDDLEKNGSSDY   59 (108)
Q Consensus        38 mlsveerdailddlekngssdy   59 (108)
                      -||.|....|++.|.++|...+
T Consensus        83 ~Ls~e~~~~Il~~Lv~~G~Aew  104 (124)
T d1xb4a1          83 SVSQVFIDEIWSQMTKEGKCLP  104 (124)
T ss_dssp             ECCHHHHHHHHHHHHHTTSEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCEE
T ss_conf             6899999999999997488133


Done!