Query gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 108 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:15:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781082.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1uyra2 c.14.1.4 (A:1815-2218) 28.5 14 0.001 16.3 2.0 33 6-39 302-338 (404) 2 d1vlua_ c.82.1.1 (A:) Gamma-gl 25.0 16 0.0011 16.0 1.7 32 21-52 4-35 (436) 3 d1tzyb_ a.22.1.1 (B:) Histone 23.0 17 0.0012 15.8 1.6 13 59-71 31-43 (92) 4 d1ad3a_ c.82.1.1 (A:) Aldehyde 19.1 27 0.0019 14.7 1.9 29 23-51 3-31 (446) 5 d1j2na_ a.165.1.1 (A:) Myosin 15.5 25 0.0018 14.9 1.1 38 36-73 60-98 (99) 6 d1o20a_ c.82.1.1 (A:) Gamma-gl 14.2 34 0.0025 14.1 1.5 29 22-50 3-31 (414) 7 d2hqya2 d.108.1.4 (A:1-134) Hy 13.0 43 0.0031 13.5 1.7 29 39-67 7-38 (134) 8 d1ghca_ a.4.5.13 (A:) Histone 10.5 42 0.0031 13.5 1.0 28 29-62 2-29 (75) 9 d1s0pa_ a.192.1.1 (A:) N-termi 9.8 55 0.004 12.9 5.7 53 11-65 34-89 (176) 10 d1xb4a1 a.4.5.54 (A:2-125) Vac 9.3 58 0.0042 12.7 1.7 22 38-59 83-104 (124) No 1 >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=28.51 E-value=14 Score=16.29 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=20.4 Q ss_pred HCCHHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHH Q ss_conf 1123488888541567999998----348561132333 Q gi|254781082|r 6 SRNREFIEYWRLERNSIVEALR----KAKPSMSDLAML 39 (108) Q Consensus 6 srnrefieywrlernsivealr----kakpsmsdlaml 39 (108) ...|.|. ||||+|--.-+.+. .+.|.++...++ T Consensus 302 ~~tR~~~-~~~lrr~l~e~~~~~~~~~~~~~~~~~~~~ 338 (404) T d1uyra2 302 TEARRFF-FWRLRRRLNEEYLIKRLSHQVGEASRLEKI 338 (404) T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTTTTCCSSCCHHHHH T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 8859999-999999874999999999857777879999 No 2 >d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=24.95 E-value=16 Score=16.01 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=23.9 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 79999983485611323330567776888787 Q gi|254781082|r 21 SIVEALRKAKPSMSDLAMLSVEERDAILDDLE 52 (108) Q Consensus 21 sivealrkakpsmsdlamlsveerdailddle 52 (108) ++-|..++||-....++-+|.++|+.||..+. T Consensus 4 ~~e~~~~~Ak~A~~~l~~~s~~~R~~iL~~~a 35 (436) T d1vlua_ 4 SSQQIAKNARKAGNILKTISNEGRSDILYKIH 35 (436) T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 79999999999999998699999999999999 No 3 >d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Probab=22.97 E-value=17 Score=15.84 Aligned_cols=13 Identities=54% Similarity=0.841 Sum_probs=10.3 Q ss_pred HHHHHHHHHHHHH Q ss_conf 2379999999999 Q gi|254781082|r 59 YSFVNDLWERLKY 71 (108) Q Consensus 59 ysfvndlwerlky 71 (108) -|||||+.||+-- T Consensus 31 nsfvndiferIa~ 43 (92) T d1tzyb_ 31 NSFVNDIFERIAG 43 (92) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 4 >d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=19.07 E-value=27 Score=14.69 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=15.0 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99998348561132333056777688878 Q gi|254781082|r 23 VEALRKAKPSMSDLAMLSVEERDAILDDL 51 (108) Q Consensus 23 vealrkakpsmsdlamlsveerdailddl 51 (108) -||+.+|+-.......+|+++|-.+|..+ T Consensus 3 ~~av~~Ar~Af~~w~~~s~~~R~~iL~~~ 31 (446) T d1ad3a_ 3 SDTVKRAREAFNSGKTRSLQFRIQQLEAL 31 (446) T ss_dssp HHHHHHHHHHHHTTGGGCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 99999999999862889999999999999 No 5 >d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein, CPI-17 {Pig (Sus scrofa) [TaxId: 9823]} Probab=15.54 E-value=25 Score=14.88 Aligned_cols=38 Identities=32% Similarity=0.367 Sum_probs=26.8 Q ss_pred HHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 23330567776-888787348751237999999999974 Q gi|254781082|r 36 LAMLSVEERDA-ILDDLEKNGSSDYSFVNDLWERLKYLR 73 (108) Q Consensus 36 lamlsveerda-ilddlekngssdysfvndlwerlkylr 73 (108) |.|-|.|+|-. +-.-|..-.+..-.|+++|-.|++-|+ T Consensus 60 Ldl~s~e~R~~~lq~lL~~c~kPtE~FI~eLL~klrgL~ 98 (99) T d1j2na_ 60 LELESEEERSRKIQGLLKSCTNPTENFVQELLVKLRGLH 98 (99) T ss_dssp TCSSCSHHHHHHHHHHHTSSSSCSHHHHHHHHHHTSCSC T ss_pred HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC T ss_conf 806875899999999997669986999999999998622 No 6 >d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} Probab=14.23 E-value=34 Score=14.06 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=16.7 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999834856113233305677768887 Q gi|254781082|r 22 IVEALRKAKPSMSDLAMLSVEERDAILDD 50 (108) Q Consensus 22 ivealrkakpsmsdlamlsveerdaildd 50 (108) +.++.++|+-.......+|.++|.+||.. T Consensus 3 ~~~a~~~A~~Af~~w~~~s~~eR~~iL~k 31 (414) T d1o20a_ 3 LLEKAKKVREAWDVLRNATTREKNKAIKK 31 (414) T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999999999862999999999999 No 7 >d2hqya2 d.108.1.4 (A:1-134) Hypothetical protein BT3689 {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=13.00 E-value=43 Score=13.50 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHH--HCCCCCHHHHHH-HHH Q ss_conf 30567776888787--348751237999-999 Q gi|254781082|r 39 LSVEERDAILDDLE--KNGSSDYSFVND-LWE 67 (108) Q Consensus 39 lsveerdailddle--kngssdysfvnd-lwe 67 (108) ++.+.++.|-.=+. ...+|||||.|- +|. T Consensus 7 i~l~Dk~~~~~y~~~~~~~~sd~sF~Nl~~W~ 38 (134) T d2hqya2 7 ITLADRDTITAFTMKSDRRNCDLSFSNLCSWR 38 (134) T ss_dssp CCGGGHHHHHHHHTTSCCCCGGGCHHHHHHTH T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 88767999999985189861143398999988 No 8 >d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Probab=10.46 E-value=42 Score=13.53 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=19.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 4856113233305677768887873487512379 Q gi|254781082|r 29 AKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFV 62 (108) Q Consensus 29 akpsmsdlamlsveerdailddlekngssdysfv 62 (108) |.|+++++-. +||.+--|++|||-.... T Consensus 2 a~P~y~~MI~------eAI~al~er~GsS~~AI~ 29 (75) T d1ghca_ 2 AGPSVTELIT------KAVSASKERKGLSLAALK 29 (75) T ss_dssp CSSSHHHHHH------HHHHHCSSSSCCTTSSGG T ss_pred CCCCHHHHHH------HHHHHCCCCCCCCHHHHH T ss_conf 9988799999------999971888995999999 No 9 >d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]} Probab=9.85 E-value=55 Score=12.85 Aligned_cols=53 Identities=26% Similarity=0.239 Sum_probs=37.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 888885415679999983485611323330---5677768887873487512379999 Q gi|254781082|r 11 FIEYWRLERNSIVEALRKAKPSMSDLAMLS---VEERDAILDDLEKNGSSDYSFVNDL 65 (108) Q Consensus 11 fieywrlernsivealrkakpsmsdlamls---veerdailddlekngssdysfvndl 65 (108) +-+-+..+|.-|.-|-...||++.++..|- -+.-.+|-+--|+|.+|. |.|.| T Consensus 34 v~~aF~~qr~~L~~a~~~kKP~~~~~~~ll~pl~~~i~~i~~~re~nR~s~--~fNHL 89 (176) T d1s0pa_ 34 LVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGKIRDSNRSSK--FFNNL 89 (176) T ss_dssp HHHHHHHHHHHHHHHHHEECCCHHHHHHHTHHHHHHHHHHHHHHHTCTTCT--THHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHH T ss_conf 999999999999999842798938999998999999999999987247981--46799 No 10 >d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=9.35 E-value=58 Score=12.74 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCCH Q ss_conf 3305677768887873487512 Q gi|254781082|r 38 MLSVEERDAILDDLEKNGSSDY 59 (108) Q Consensus 38 mlsveerdailddlekngssdy 59 (108) -||.|....|++.|.++|...+ T Consensus 83 ~Ls~e~~~~Il~~Lv~~G~Aew 104 (124) T d1xb4a1 83 SVSQVFIDEIWSQMTKEGKCLP 104 (124) T ss_dssp ECCHHHHHHHHHHHHHTTSEEE T ss_pred CCCHHHHHHHHHHHHHCCCCEE T ss_conf 6899999999999997488133 Done!