RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781082|ref|YP_003065495.1| hypothetical protein
CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>2bdq_A Copper homeostasis protein CUTC; alpha beta protein,
          structural genomics, PSI, protein structure initiative;
          2.30A {Streptococcus agalactiae} (A:)
          Length = 224

 Score = 25.1 bits (54), Expect = 3.6
 Identities = 2/46 (4%), Positives = 10/46 (21%)

Query: 22 IVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWE 67
          +++   +          + +  R       +         +    E
Sbjct: 42 VIKEANQYLHEKGISVAVXIRPRGGNFVYNDLELRIXEEDILRAVE 87


>1ad3_A ALDH, aldehyde dehydrogenase (class 3); NADP,
          oxidoreductase, aromatic aldehyde; HET: NAD; 2.60A
          {Rattus norvegicus} (A:1-212,A:395-452)
          Length = 270

 Score = 24.6 bits (52), Expect = 5.2
 Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 20 NSIVEALRKAKPSMSDLAMLSVEERDAIL 48
          +  V+  R+A  S       S++ R   L
Sbjct: 4  SDTVKRAREAFNSGKTR---SLQFRIQQL 29


>2dy1_A Elongation factor G; translocation, GTP complex, structural
           genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
           (A:454-571,A:651-665)
          Length = 133

 Score = 24.2 bits (52), Expect = 6.0
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 19  RNSIVEALRKAKPSMSDLAMLSVEER 44
             +  + + +A P +  LA   V+ER
Sbjct: 104 SLAFKKVMAEAHPVLPHLAQRIVQER 129


>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural
          genomics, PSI-2, protein structure initiative; 2.00A
          {Listeria monocytogenes} (A:1-219,A:425-464)
          Length = 259

 Score = 24.2 bits (51), Expect = 6.3
 Identities = 6/28 (21%), Positives = 14/28 (50%)

Query: 24 EALRKAKPSMSDLAMLSVEERDAILDDL 51
            +  A  +  +LA +S ++ D I+  +
Sbjct: 16 NLIESANKAQKELAAMSQQQIDTIVKAI 43


>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding,
          nucleotide-binding, phosphoprotein,
          serine/threonine-protein kinase; 2.80A
          {Schizosaccharomyces pombe} (B:272-336)
          Length = 65

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 18 ERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGS 56
            + IVEALR  + +    A   + E   I + LE +  
Sbjct: 25 SEDYIVEALRSDENNEVKEAYNLLHENQVIQEKLEHHHH 63


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0420    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 858,500
Number of extensions: 35918
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 23
Length of query: 108
Length of database: 4,956,049
Length adjustment: 64
Effective length of query: 44
Effective length of database: 2,792,529
Effective search space: 122871276
Effective search space used: 122871276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)