RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62] (108 letters) >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} (A:) Length = 224 Score = 25.1 bits (54), Expect = 3.6 Identities = 2/46 (4%), Positives = 10/46 (21%) Query: 22 IVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWE 67 +++ + + + R + + E Sbjct: 42 VIKEANQYLHEKGISVAVXIRPRGGNFVYNDLELRIXEEDILRAVE 87 >1ad3_A ALDH, aldehyde dehydrogenase (class 3); NADP, oxidoreductase, aromatic aldehyde; HET: NAD; 2.60A {Rattus norvegicus} (A:1-212,A:395-452) Length = 270 Score = 24.6 bits (52), Expect = 5.2 Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%) Query: 20 NSIVEALRKAKPSMSDLAMLSVEERDAIL 48 + V+ R+A S S++ R L Sbjct: 4 SDTVKRAREAFNSGKTR---SLQFRIQQL 29 >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} (A:454-571,A:651-665) Length = 133 Score = 24.2 bits (52), Expect = 6.0 Identities = 7/26 (26%), Positives = 13/26 (50%) Query: 19 RNSIVEALRKAKPSMSDLAMLSVEER 44 + + + +A P + LA V+ER Sbjct: 104 SLAFKKVMAEAHPVLPHLAQRIVQER 129 >3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Listeria monocytogenes} (A:1-219,A:425-464) Length = 259 Score = 24.2 bits (51), Expect = 6.3 Identities = 6/28 (21%), Positives = 14/28 (50%) Query: 24 EALRKAKPSMSDLAMLSVEERDAILDDL 51 + A + +LA +S ++ D I+ + Sbjct: 16 NLIESANKAQKELAAMSQQQIDTIVKAI 43 >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotein, serine/threonine-protein kinase; 2.80A {Schizosaccharomyces pombe} (B:272-336) Length = 65 Score = 24.0 bits (52), Expect = 8.2 Identities = 11/39 (28%), Positives = 17/39 (43%) Query: 18 ERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGS 56 + IVEALR + + A + E I + LE + Sbjct: 25 SEDYIVEALRSDENNEVKEAYNLLHENQVIQEKLEHHHH 63 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.132 0.383 Gapped Lambda K H 0.267 0.0420 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 858,500 Number of extensions: 35918 Number of successful extensions: 152 Number of sequences better than 10.0: 1 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 23 Length of query: 108 Length of database: 4,956,049 Length adjustment: 64 Effective length of query: 44 Effective length of database: 2,792,529 Effective search space: 122871276 Effective search space used: 122871276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.8 bits)