BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781082|ref|YP_003065495.1| hypothetical protein
CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 108

 Score =  216 bits (550), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MNTDVSRNREFIEYWRLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYS 60
           MNTDVSRNREFIEYWRLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYS
Sbjct: 1   MNTDVSRNREFIEYWRLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYS 60

Query: 61  FVNDLWERLKYLRDLPVYNFSLDYVSRFHSFVSDEVAVWYEVTKEKKK 108
           FVNDLWERLKYLRDLPVYNFSLDYVSRFHSFVSDEVAVWYEVTKEKKK
Sbjct: 61  FVNDLWERLKYLRDLPVYNFSLDYVSRFHSFVSDEVAVWYEVTKEKKK 108


>gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 316

 Score = 23.1 bits (48), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 56 SSDYSFVNDLWERLKYLRDLPVYNFSLDYVSR 87
          +S  +F+  ++E+    +DLPV+   L Y+SR
Sbjct: 43 TSKGTFILTIYEKRMNEKDLPVFIELLHYISR 74


>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 509

 Score = 23.1 bits (48), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 11  FIEYWRLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDL 51
           F+ + R+    I+E +RK K    D+    + E    L+D 
Sbjct: 468 FLSHMRVSSQDILEDIRKQKVLTDDIRSKLINEIKVFLEDF 508


>gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid)
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 398

 Score = 21.9 bits (45), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 62 VNDLWERLKYLRDLPVYNFSLDYV 85
          V   + R+K+L D+ V+N S+  +
Sbjct: 9  VTRYFSRMKFLYDMRVHNISVQII 32


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.132    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,943
Number of Sequences: 1233
Number of extensions: 2544
Number of successful extensions: 9
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 108
length of database: 328,796
effective HSP length: 62
effective length of query: 46
effective length of database: 252,350
effective search space: 11608100
effective search space used: 11608100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)