BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62] (108 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62] Length = 108 Score = 216 bits (550), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MNTDVSRNREFIEYWRLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYS 60 MNTDVSRNREFIEYWRLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYS Sbjct: 1 MNTDVSRNREFIEYWRLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYS 60 Query: 61 FVNDLWERLKYLRDLPVYNFSLDYVSRFHSFVSDEVAVWYEVTKEKKK 108 FVNDLWERLKYLRDLPVYNFSLDYVSRFHSFVSDEVAVWYEVTKEKKK Sbjct: 61 FVNDLWERLKYLRDLPVYNFSLDYVSRFHSFVSDEVAVWYEVTKEKKK 108 >gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 316 Score = 23.1 bits (48), Expect = 1.3, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 56 SSDYSFVNDLWERLKYLRDLPVYNFSLDYVSR 87 +S +F+ ++E+ +DLPV+ L Y+SR Sbjct: 43 TSKGTFILTIYEKRMNEKDLPVFIELLHYISR 74 >gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 23.1 bits (48), Expect = 1.4, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 11 FIEYWRLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDL 51 F+ + R+ I+E +RK K D+ + E L+D Sbjct: 468 FLSHMRVSSQDILEDIRKQKVLTDDIRSKLINEIKVFLEDF 508 >gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 21.9 bits (45), Expect = 3.0, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 15/24 (62%) Query: 62 VNDLWERLKYLRDLPVYNFSLDYV 85 V + R+K+L D+ V+N S+ + Sbjct: 9 VTRYFSRMKFLYDMRVHNISVQII 32 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.132 0.383 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,943 Number of Sequences: 1233 Number of extensions: 2544 Number of successful extensions: 9 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of query: 108 length of database: 328,796 effective HSP length: 62 effective length of query: 46 effective length of database: 252,350 effective search space: 11608100 effective search space used: 11608100 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)