Query gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 160
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 04:10:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781083.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01371 met_syn_B12ind 5-met 90.1 0.12 3E-06 30.3 1.0 56 65-128 666-721 (778)
2 PRK05222 5-methyltetrahydropte 86.1 0.17 4.2E-06 29.5 -0.3 60 65-133 642-701 (756)
3 pfam06279 DUF1033 Protein of u 41.5 9.9 0.00025 19.4 0.6 66 25-91 24-90 (120)
4 TIGR00110 ilvD dihydroxy-acid 38.4 6.3 0.00016 20.5 -0.7 28 93-120 557-592 (601)
5 PRK03906 mannonate dehydratase 32.3 19 0.00048 17.8 0.9 50 50-103 32-81 (389)
6 PRK04483 threonyl-tRNA synthet 29.1 12 0.0003 18.9 -0.6 31 48-80 183-217 (634)
7 PRK03772 threonyl-tRNA synthet 28.6 12 0.0003 18.9 -0.7 31 48-80 183-217 (642)
8 TIGR01358 DAHP_synth_II 3-deox 27.6 11 0.00029 19.0 -0.9 38 43-80 102-140 (450)
9 PRK09946 hypothetical protein; 27.2 35 0.0009 16.2 1.5 35 6-40 3-40 (270)
10 TIGR02121 Na_Pro_sym sodium/pr 24.6 23 0.00059 17.3 0.2 20 3-22 177-196 (517)
11 pfam09090 MIF4G_like_2 MIF4G l 24.2 63 0.0016 14.8 5.4 58 14-71 51-108 (248)
12 PRK09395 actP acetate permease 23.9 64 0.0016 14.7 2.7 19 3-21 202-220 (551)
13 PRK04199 rpl10e 50S ribosomal 23.3 52 0.0013 15.3 1.8 58 80-138 42-99 (173)
14 pfam09658 Cas_Csx9 CRISPR-asso 22.4 38 0.00096 16.1 0.9 13 105-117 254-266 (377)
15 COG2015 Alkyl sulfatase and re 21.7 56 0.0014 15.1 1.7 32 98-132 144-175 (655)
16 PRK12444 threonyl-tRNA synthet 21.3 13 0.00033 18.7 -1.6 30 48-79 186-219 (639)
17 PTZ00173 60S ribosomal protein 21.0 63 0.0016 14.8 1.8 53 85-138 50-102 (215)
18 PRK12305 thrS threonyl-tRNA sy 20.4 15 0.00038 18.4 -1.5 32 47-80 118-153 (576)
No 1
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276 This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=90.07 E-value=0.12 Score=30.29 Aligned_cols=56 Identities=34% Similarity=0.424 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHEECC
Q ss_conf 7664331278887654653332259999998756778656666679864402208210101143
Q gi|254781083|r 65 TYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYP 128 (160)
Q Consensus 65 tywsergdiinaldqdlqdvesievfeylktrlsdleahrrsmsfyfakypkkvgpsvidvvyp 128 (160)
-.+||=+|||++.++==-||-|||.=-=--.-|++++. +.+||+.+||.|-|.-=|
T Consensus 666 MCYSeFn~II~~I~~LDADVIsIE~SRS~~~lL~~f~~--------~~~Y~~giGpGVYDIHSP 721 (778)
T TIGR01371 666 MCYSEFNDIIEAIAALDADVISIEASRSDMELLDAFKN--------IFGYPNGIGPGVYDIHSP 721 (778)
T ss_pred CCCCCHHHHHHHHHHCCCCCEEHHHCCCCHHHHHHHHH--------HCCCCCCCCCCEEECCCC
T ss_conf 33377437999884325871003110475579999852--------036432348721322688
No 2
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=86.12 E-value=0.17 Score=29.46 Aligned_cols=60 Identities=38% Similarity=0.483 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHEECCCHHHH
Q ss_conf 766433127888765465333225999999875677865666667986440220821010114303431
Q gi|254781083|r 65 TYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLV 133 (160)
Q Consensus 65 tywsergdiinaldqdlqdvesievfeylktrlsdleahrrsmsfyfakypkkvgpsvidvvyphshlv 133 (160)
-.+||-+|||.+.+.-=-||-|||.-. |+.|--. .|--..||+.+||.|.|+--|.---+
T Consensus 642 MCYSeF~dIi~aI~~mDADVIsiE~sR------S~~ell~---~f~~~~y~~~IGpGVYDIHSPrvPsv 701 (756)
T PRK05222 642 MCYSEFNDIIDAIAALDADVISIETSR------SDMELLD---AFEDFGYPNEIGPGVYDIHSPRVPSV 701 (756)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECC------CCCHHHH---HHHHCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 246627999999985898757898317------7673899---99867997667780012578999998
No 3
>pfam06279 DUF1033 Protein of unknown function (DUF1033). This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=41.46 E-value=9.9 Score=19.36 Aligned_cols=66 Identities=29% Similarity=0.479 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 97112168899999999999987466688851134566777664331-27888765465333225999
Q gi|254781083|r 25 FVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERG-DIINALDQDLQDVESIEVFE 91 (160)
Q Consensus 25 fvqrksfadvhealerykkvarvvgphipnsnvfsssvrrtywserg-diinaldqdlqdvesievfe 91 (160)
.++.++|.+-.|||..|++...-.--.-||.++-+.-. -++|.+-- .--..-|.|||---||-+++
T Consensus 24 Ive~~~F~~~~eal~~Y~~~w~~~~~~y~~~~~kk~~~-~AFWn~~d~~~CEdCdedLQ~yhslilL~ 90 (120)
T pfam06279 24 IVEEKEFDDYEEALKYYKKLWQKLKENYPNYKSKKDLM-TAFWNNEDQRWCEDCDEDLQQYHSLILLE 90 (120)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEE-EEEECCCCHHHHHHHHHHHHHHHHHEEEC
T ss_conf 56676125599999999999999998683121176437-87724633104551067999876413640
No 4
>TIGR00110 ilvD dihydroxy-acid dehydratase; InterPro: IPR004404 Two dehydratases, dihydroxy-acid dehydratase (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (gene edd) have been shown to be evolutionary related . Dihydroxy-acid dehydratase catalyzes the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyzes the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster . This family represents dihydroxy-acid dehydratase (DAD). It contains a catalytically essential [4Fe-4S] cluster and catalyses the fourth step in valine and isoleucine biosynthesis.; GO: 0004160 dihydroxy-acid dehydratase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=38.44 E-value=6.3 Score=20.47 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHCHHHCCC
Q ss_conf 998756778656--------6666798644022082
Q gi|254781083|r 93 LKTRLSDLEAHR--------RSMSFYFAKYPKKVGP 120 (160)
Q Consensus 93 lktrlsdleahr--------rsmsfyfakypkkvgp 120 (160)
|+.|+..-.+.+ |..+||.|||-|-|.-
T Consensus 557 la~Rr~~~~~~~p~~P~~~~r~~~G~La~YaKLv~S 592 (601)
T TIGR00110 557 LAERRAKWKKPGPWEPKNREREVKGYLAKYAKLVSS 592 (601)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 999998617741788733344542023234553225
No 5
>PRK03906 mannonate dehydratase; Provisional
Probab=32.33 E-value=19 Score=17.77 Aligned_cols=50 Identities=30% Similarity=0.341 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 668885113456677766433127888765465333225999999875677865
Q gi|254781083|r 50 PHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAH 103 (160)
Q Consensus 50 phipnsnvfsssvrrtywsergdiinaldqdlqdvesievfeylktrlsdleah 103 (160)
.|||+..|.+..- -.+|-+.|++-.-.+.-|||+-|.|-.|++..+.+.+
T Consensus 32 h~ip~GevW~~ee----I~~~k~~Ie~~GL~w~VVESvPVhe~IK~g~~~~d~~ 81 (389)
T PRK03906 32 HHIPNGEVWPVEE----ILKRKAEIEAAGLEWSVVESVPVHEDIKTGTPNRDQY 81 (389)
T ss_pred CCCCCCCCCCHHH----HHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCHHHH
T ss_conf 3689988679999----9999999997498189984678568887499878999
No 6
>PRK04483 threonyl-tRNA synthetase; Validated
Probab=29.09 E-value=12 Score=18.92 Aligned_cols=31 Identities=39% Similarity=0.819 Sum_probs=21.4
Q ss_pred HCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 466688851134----566777664331278887654
Q gi|254781083|r 48 VGPHIPNSNVFS----SSVRRTYWSERGDIINALDQD 80 (160)
Q Consensus 48 vgphipnsnvfs----ssvrrtywsergdiinaldqd 80 (160)
.|||+||..-.. .++--.|| |||--|..=|-
T Consensus 183 rGPHv~~T~~ikafkL~~vsgaYW--rGd~~n~~LqR 217 (634)
T PRK04483 183 RGPHVPNTRFLKAFKLTRISGAYW--RGDAKNEQLQR 217 (634)
T ss_pred CCCCCCCCCCCCHHEEEEHHHHEE--CCCCCCCCEEE
T ss_conf 999889711131112301102112--68875710289
No 7
>PRK03772 threonyl-tRNA synthetase; Validated
Probab=28.61 E-value=12 Score=18.95 Aligned_cols=31 Identities=39% Similarity=0.714 Sum_probs=21.8
Q ss_pred HCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 466688851134----566777664331278887654
Q gi|254781083|r 48 VGPHIPNSNVFS----SSVRRTYWSERGDIINALDQD 80 (160)
Q Consensus 48 vgphipnsnvfs----ssvrrtywsergdiinaldqd 80 (160)
.|||+||..... .++-..|| |||--|..=|-
T Consensus 183 rGPHvp~t~~ikafkl~~vagAYW--rGd~~n~~LqR 217 (642)
T PRK03772 183 RGPHVPNMRFCHHFKLMKTAGAYW--RGDSNNKMLQR 217 (642)
T ss_pred CCCCCCCCCCCCEEEEEECCHHEE--CCCCCCCHHEE
T ss_conf 888778755553257731232114--77765700079
No 8
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms . The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=27.62 E-value=11 Score=19.02 Aligned_cols=38 Identities=37% Similarity=0.337 Sum_probs=21.6
Q ss_pred HHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999874666-88851134566777664331278887654
Q gi|254781083|r 43 KVARVVGPH-IPNSNVFSSSVRRTYWSERGDIINALDQD 80 (160)
Q Consensus 43 kvarvvgph-ipnsnvfsssvrrtywsergdiinaldqd 80 (160)
||+|.-|-- -|-|.-+...=--|-=|-||||||+.|-|
T Consensus 102 KVGRiAGQyaKPRS~p~E~~DGV~LPsYRGD~iNG~~F~ 140 (450)
T TIGR01358 102 KVGRIAGQYAKPRSAPTEARDGVTLPSYRGDIINGPAFT 140 (450)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 862022636788888766668802473257411688888
No 9
>PRK09946 hypothetical protein; Provisional
Probab=27.21 E-value=35 Score=16.24 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=27.3
Q ss_pred EEHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5366779999---9999999999711216889999999
Q gi|254781083|r 6 VTWNDLVQVS---ILVFCFVSHFVQRKSFADVHEALER 40 (160)
Q Consensus 6 vtwndlvqvs---ilvfcfvshfvqrksfadvhealer 40 (160)
.|-.||-+.+ .+---|+-.|-|--+|+|||.||-+
T Consensus 3 ITr~dlr~w~v~~~~YRWFLr~FP~GG~y~~vh~aL~~ 40 (270)
T PRK09946 3 ITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIE 40 (270)
T ss_pred EEHHHHHHHEECCHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 12775545241506778999878899851899999997
No 10
>TIGR02121 Na_Pro_sym sodium/proline symporter; InterPro: IPR011851 This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. ; GO: 0005298 proline:sodium symporter activity, 0031402 sodium ion binding, 0006814 sodium ion transport, 0015824 proline transport, 0016021 integral to membrane.
Probab=24.56 E-value=23 Score=17.25 Aligned_cols=20 Identities=35% Similarity=0.775 Sum_probs=15.7
Q ss_pred EEEEEHHHHHHHHHHHHHHH
Q ss_conf 69853667799999999999
Q gi|254781083|r 3 YLSVTWNDLVQVSILVFCFV 22 (160)
Q Consensus 3 ylsvtwndlvqvsilvfcfv 22 (160)
||.|.|.|+||-+|..+..+
T Consensus 177 fLAVSwTD~vQG~lM~~AL~ 196 (517)
T TIGR02121 177 FLAVSWTDFVQGLLMFAALV 196 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999
No 11
>pfam09090 MIF4G_like_2 MIF4G like. Members of this family are involved in mediating U snRNA export from the nucleus. They adopt a highly helical structure, wherein the polypeptide chain forms a right-handed solenoid. At the tertiary level, the domain is composed of a superhelical arrangement of successive antiparallel pairs of helices.
Probab=24.18 E-value=63 Score=14.78 Aligned_cols=58 Identities=21% Similarity=0.385 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999999997112168899999999999987466688851134566777664331
Q gi|254781083|r 14 VSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERG 71 (160)
Q Consensus 14 vsilvfcfvshfvqrksfadvhealerykkvarvvgphipnsnvfsssvrrtywserg 71 (160)
.+|-||--.--++..|||..+--+++||+.+-+-+++.-+....---..--.||....
T Consensus 51 ~~i~v~vq~~l~~GSkSfSH~~~~i~r~~~~lk~l~~~~~~~q~~ii~sv~~~W~~~~ 108 (248)
T pfam09090 51 FAIDLFVQTLLHLGSRSFSHAFSAIERYKEVLKTLSAESEEKQQWIIEAVFEYWKNQP 108 (248)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 7799999999992464099999999999999998726987899999999999983598
No 12
>PRK09395 actP acetate permease; Provisional
Probab=23.90 E-value=64 Score=14.75 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=16.3
Q ss_pred EEEEEHHHHHHHHHHHHHH
Q ss_conf 6985366779999999999
Q gi|254781083|r 3 YLSVTWNDLVQVSILVFCF 21 (160)
Q Consensus 3 ylsvtwndlvqvsilvfcf 21 (160)
.+++||+|.+|.-+++++.
T Consensus 202 M~AvtwtqiiQ~vlLl~g~ 220 (551)
T PRK09395 202 MLATTWVQIIKAVLLLSGA 220 (551)
T ss_pred EEEEHHHHHHHHHHHHHHH
T ss_conf 0210599999999999999
No 13
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=23.35 E-value=52 Score=15.29 Aligned_cols=58 Identities=31% Similarity=0.365 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHEECCCHHHHHHHHC
Q ss_conf 46533322599999987567786566666798644022082101011430343122200
Q gi|254781083|r 80 DLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKEDKV 138 (160)
Q Consensus 80 dlqdvesievfeylktrlsdleahrrsmsfyfakypkkvgpsvidvvyphshlvkedkv 138 (160)
|..-.-++-+-|...-|-.-|||-|-...-|..|.-.+-|--..--+||| |.+.|.|.
T Consensus 42 ~fp~~v~Lv~~e~~QIr~~ALEAaRi~aNkyl~k~~G~~~y~~rir~yPh-hVlReNKm 99 (173)
T PRK04199 42 DFPVEVSLVVKEPCQIRHNALEAARIAANKYLTKTVGRSNYYLKIRVYPH-HVLRENKM 99 (173)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-EEEEECHH
T ss_conf 88778999865511220889999999999999985275662699984364-02564122
No 14
>pfam09658 Cas_Csx9 CRISPR-associated protein (Cas_Csx9). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry describes archaeal proteins encoded in cas gene regions.
Probab=22.40 E-value=38 Score=16.07 Aligned_cols=13 Identities=46% Similarity=0.784 Sum_probs=5.0
Q ss_pred HHHHHHHHHCHHH
Q ss_conf 6666798644022
Q gi|254781083|r 105 RSMSFYFAKYPKK 117 (160)
Q Consensus 105 rsmsfyfakypkk 117 (160)
+..+-|.++|-+|
T Consensus 254 ~~l~nym~~Yv~r 266 (377)
T pfam09658 254 KELSNYLAEYVKK 266 (377)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8789999999999
No 15
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.65 E-value=56 Score=15.09 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHCHHHCCCCCHHEECCCHHH
Q ss_conf 67786566666798644022082101011430343
Q gi|254781083|r 98 SDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHL 132 (160)
Q Consensus 98 sdleahrrsmsfyfakypkkvgpsvidvvyphshl 132 (160)
.--|.-+-+..+|+.+-|++ .|..|+|.|||-
T Consensus 144 ~t~~tA~aAldl~~~~~g~r---PV~aVIYtHsH~ 175 (655)
T COG2015 144 VTPETAKAALDLYNQHRGQR---PVVAVIYTHSHS 175 (655)
T ss_pred CCCHHHHHHHHHHHHHCCCC---CEEEEEEECCCC
T ss_conf 78288999999999765889---748999612542
No 16
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=21.34 E-value=13 Score=18.70 Aligned_cols=30 Identities=40% Similarity=0.822 Sum_probs=18.5
Q ss_pred HCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 466688851134----56677766433127888765
Q gi|254781083|r 48 VGPHIPNSNVFS----SSVRRTYWSERGDIINALDQ 79 (160)
Q Consensus 48 vgphipnsnvfs----ssvrrtywsergdiinaldq 79 (160)
.|||+||..-.. .++-..|| |||--|..=|
T Consensus 186 rGPHv~~t~~ikafkL~~vsgAYW--rGd~~n~~Lq 219 (639)
T PRK12444 186 RGPHLPSTGYLKAFQLTHVSGAYW--RGDSNNQVLQ 219 (639)
T ss_pred CCCCCCCCCCCEEEEEEEEECCEE--CCCCCCCCEE
T ss_conf 887778745440789734002142--7887682216
No 17
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=20.97 E-value=63 Score=14.81 Aligned_cols=53 Identities=23% Similarity=0.152 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHEECCCHHHHHHHHC
Q ss_conf 322599999987567786566666798644022082101011430343122200
Q gi|254781083|r 85 ESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKEDKV 138 (160)
Q Consensus 85 esievfeylktrlsdleahrrsmsfyfakypkkvgpsvidvvyphshlvkedkv 138 (160)
-.+-+-|+-.-|-..|||-|-...-|..|.-.+-|-...--+||| |...|.|.
T Consensus 50 v~Lv~~e~~Qir~~ALEAaRi~aNkyl~k~~Gk~~fhlrir~~P~-hVlReNKm 102 (215)
T PTZ00173 50 IHVVSRELEQISSEALEAARIQANKYMVKRAGKDVFHMRIRVHPF-HVLRINKM 102 (215)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCH-HEEEECHH
T ss_conf 999865410030678999999988999985175651589984341-21554111
No 18
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=20.41 E-value=15 Score=18.39 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=21.3
Q ss_pred HHCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7466688851134----566777664331278887654
Q gi|254781083|r 47 VVGPHIPNSNVFS----SSVRRTYWSERGDIINALDQD 80 (160)
Q Consensus 47 vvgphipnsnvfs----ssvrrtywsergdiinaldqd 80 (160)
..|||+|+..... .++-..|| |||--|..=|-
T Consensus 118 CrGpHv~~t~~ikafkL~~vsgaYW--rGd~~n~~LqR 153 (576)
T PRK12305 118 CAGNHVESTKEIKNFKLLSIAGAYW--RGDSKNKQLTR 153 (576)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCEE--CCCCCCCEEEE
T ss_conf 8998889723242468864366303--57875810089
Done!