Query         gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 160
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 21:15:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781083.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3fse_A Two-domain protein con  60.5     7.5 0.00022   19.7   2.8   43   77-121   107-149 (159)
  2 >1h2v_C 80 kDa nuclear CAP bin  24.3      55  0.0016   14.8   5.6   54   16-70     61-114 (130)
  3 >2uz8_A Eukaryotic translation  23.9      18 0.00054   17.5  -0.1   24  117-140    36-59  (60)
  4 >1ffk_F Ribosomal protein L10E  20.5      56  0.0017   14.7   1.8   49   86-135    47-95  (157)
  5 >3dc8_A Dihydropyrimidinase; T  15.8      47  0.0014   15.1   0.6   28  115-142   198-225 (323)
  6 >3k63_A Conserved hypothetical  11.5      61  0.0018   14.5   0.1   24  112-135    50-73  (126)
  7 >3bwx_A Alpha/beta hydrolase;   10.6 1.2E+02  0.0035   12.8   1.4   37   30-67      1-37  (58)
  8 >3kfa_A V-ABL, tyrosine-protei  10.4 1.2E+02  0.0037   12.8   1.5   13   28-40     70-82  (102)
  9 >2hl0_A Threonyl-tRNA syntheta  10.3      96  0.0028   13.4   0.8   16  116-132    69-84  (143)
 10 >3d1c_A Flavin-containing puta  10.1 1.1E+02  0.0031   13.1   0.9   20   19-40    191-210 (243)

No 1  
>>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} (A:207-365)
Probab=60.52  E-value=7.5  Score=19.70  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCC
Q ss_conf             765465333225999999875677865666667986440220821
Q gi|254781083|r   77 LDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPS  121 (160)
Q Consensus        77 ldqdlqdvesievfeylktrlsdleahrrsmsfyfakypkkvgps  121 (160)
                      |-..+.|--+..+|+-....|+..|  .|-.+.|-+.-+..+-|.
T Consensus       107 Lc~q~TDP~t~~if~~Ie~dL~~~E--qrLa~LYR~R~g~~v~PP  149 (159)
T 3fse_A          107 LCAXYTDPIATAIFKEIYKDLVKYE--QRLVSLYRTRTNATVQPP  149 (159)
T ss_dssp             HTTTCSCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCC
T ss_conf             9988748517778888864446789--999999873268888999


No 2  
>>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} (C:465-594)
Probab=24.25  E-value=55  Score=14.78  Aligned_cols=54  Identities=19%  Similarity=0.255  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999999999711216889999999999998746668885113456677766433
Q gi|254781083|r   16 ILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSER   70 (160)
Q Consensus        16 ilvfcfvshfvqrksfadvhealerykkvarvvgphipnsnvfsssvrrtywser   70 (160)
                      |-||--.--++.-|||..+--+++||+.+-+-+++---.....-.+|- .||...
T Consensus        61 i~vfvqtll~~GSKSfSH~~~~l~ry~~~lk~l~~~~e~q~~il~~v~-~~W~~~  114 (130)
T 1h2v_C           61 IEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMF-EVWRNH  114 (130)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHTHHHHHHHTSSHHHHHHHHHHHH-HHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH-HHHHCC
T ss_conf             179999999999876101588999999999987535677432025499-998347


No 3  
>>2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear protein, RNA-binding protein; HET: MSE; 2.0A {Homo sapiens} (A:1-60)
Probab=23.88  E-value=18  Score=17.51  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=19.6

Q ss_pred             HCCCCCHHEECCCHHHHHHHHCCC
Q ss_conf             208210101143034312220000
Q gi|254781083|r  117 KVGPSVIDVVYPHSHLVKEDKVDE  140 (160)
Q Consensus       117 kvgpsvidvvyphshlvkedkvde  140 (160)
                      .-||+....+--.+|||||.+-++
T Consensus        36 N~GP~L~Gl~TIA~HLVkea~k~~   59 (60)
T 2uz8_A           36 NNGPSLXGLTTIAAHLVKQANKEY   59 (60)
T ss_dssp             SSCCEEESHHHHHHHHHHHTTCGG
T ss_pred             CCCCEEECHHHHHHHHHHHCCCCC
T ss_conf             487236332999999999726755


No 4  
>>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (F:)
Probab=20.47  E-value=56  Score=14.71  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHEECCCHHHHHH
Q ss_conf             22599999987567786566666798644022082101011430343122
Q gi|254781083|r   86 SIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKE  135 (160)
Q Consensus        86 sievfeylktrlsdleahrrsmsfyfakypkkvgpsvidvvyphshlvke  135 (160)
                      .+-..|.-.-+-..|||-|..+.=|..+--.+.+-.+.-.+||| |.+++
T Consensus        47 ~L~a~e~~qI~~~alEAaR~ai~r~l~k~~G~~~f~~~irvfP~-~v~rk   95 (157)
T 1ffk_F           47 ENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPF-HVIRE   95 (157)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-CCCCC
T ss_conf             99986553015999999999999876664276631899995898-53224


No 5  
>>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} (A:52-327,A:444-490)
Probab=15.81  E-value=47  Score=15.14  Aligned_cols=28  Identities=14%  Similarity=0.127  Sum_probs=16.8

Q ss_pred             HHHCCCCCHHEECCCHHHHHHHHCCCCC
Q ss_conf             0220821010114303431222000014
Q gi|254781083|r  115 PKKVGPSVIDVVYPHSHLVKEDKVDEKN  142 (160)
Q Consensus       115 pkkvgpsvidvvyphshlvkedkvdekn  142 (160)
                      -|+-|..|---+-||.-+..++.+.+++
T Consensus       198 ak~~G~~Vt~Ev~phhL~l~~~~~~~~~  225 (323)
T 3dc8_A          198 ARAKGMRVFGEPLIQHLTLDETEYFDKD  225 (323)
T ss_dssp             HHHTTCCEEECCBHHHHHCCGGGGGCSC
T ss_pred             HHHCCCEEEECCCHHHHCCHHHHHHCCC
T ss_conf             7524853653121111020255542234


No 6  
>>3k63_A Conserved hypothetical membrane lipoprotein; Q9PRA0, PF04200, DUF1976, UUR17A, NESG., structural genomics, PSI-2, protein structure initiative; 2.49A {Ureaplasma parvum} PDB: 3jvc_A (A:)
Probab=11.49  E-value=61  Score=14.49  Aligned_cols=24  Identities=21%  Similarity=0.529  Sum_probs=19.2

Q ss_pred             HHCHHHCCCCCHHEECCCHHHHHH
Q ss_conf             644022082101011430343122
Q gi|254781083|r  112 AKYPKKVGPSVIDVVYPHSHLVKE  135 (160)
Q Consensus       112 akypkkvgpsvidvvyphshlvke  135 (160)
                      -||..+++-+||||.||....--.
T Consensus        50 ~k~~dki~ikVi~Vlyp~~~~~sA   73 (126)
T 3k63_A           50 HKYQNELDIKIINFLYPDGDFGSA   73 (126)
T ss_dssp             CSCTTTEEEEEEEEECTTSSHHHH
T ss_pred             HHCCCCCCEEEEEEEECCCCCCCC
T ss_conf             411252260899988468983343


No 7  
>>3bwx_A Alpha/beta hydrolase; YP_496220.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Novosphingobium aromaticivorans DSM12444} (A:151-208)
Probab=10.64  E-value=1.2e+02  Score=12.85  Aligned_cols=37  Identities=14%  Similarity=0.125  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             16889999999999998746668885113456677766
Q gi|254781083|r   30 SFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYW   67 (160)
Q Consensus        30 sfadvhealerykkvarvvgphipnsnvfsssvrrtyw   67 (160)
                      ||++.-||....+.+....|||..... ...-.++++.
T Consensus         1 sF~t~~ea~~~lr~i~~~fgP~lt~~q-W~~~a~~~~r   37 (58)
T 3bwx_A            1 NFETWXHAARALQESSGDVYPDWDITQ-WLRYAKRIXV   37 (58)
T ss_dssp             EESSHHHHHHHHHHHHTTTSTTCCHHH-HHHHHHHHEE
T ss_pred             CHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHH
T ss_conf             103578999999975211221022788-8887654310


No 8  
>>3kfa_A V-ABL, tyrosine-protein kinase transforming protein ABL; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene; HET: B91; 1.22A {Abelson murine leukemia virus} PDB: 2qoh_A* 3kf4_A* 1opj_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 3ik3_A* 2z60_A* 2e2b_A* 2g1t_A* 2hiw_A* 2v7a_A* 2f4j_A* 2g2h_A* 2g2f_A* 2g2i_A* 3dk6_A* 3dk3_A* 2hyy_A* ... (A:92-159,A:255-288)
Probab=10.41  E-value=1.2e+02  Score=12.76  Aligned_cols=13  Identities=54%  Similarity=0.948  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             1216889999999
Q gi|254781083|r   28 RKSFADVHEALER   40 (160)
Q Consensus        28 rksfadvhealer   40 (160)
                      |.|||..|.|.|.
T Consensus        70 ~~~~~~~~~~~~~   82 (102)
T 3kfa_A           70 RPSFAEIHQAFET   82 (102)
T ss_dssp             SCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
T ss_conf             9399999999999


No 9  
>>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 2hl1_A* (A:)
Probab=10.32  E-value=96  Score=13.39  Aligned_cols=16  Identities=38%  Similarity=0.756  Sum_probs=0.0

Q ss_pred             HHCCCCCHHEECCCHHH
Q ss_conf             22082101011430343
Q gi|254781083|r  116 KKVGPSVIDVVYPHSHL  132 (160)
Q Consensus       116 kkvgpsvidvvyphshl  132 (160)
                      ++++...| |+||..||
T Consensus        69 ~kv~~~~i-vlYPyAHL   84 (143)
T 2hl0_A           69 EQVKAENV-FVYPFAHL   84 (143)
T ss_dssp             HHHTCCEE-EEEECGGG
T ss_pred             HHCCCCEE-EEECCHHC
T ss_conf             85399779-99360220


No 10 
>>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, structural genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} (A:1-145,A:272-369)
Probab=10.10  E-value=1.1e+02  Score=13.14  Aligned_cols=20  Identities=30%  Similarity=0.700  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999711216889999999
Q gi|254781083|r   19 FCFVSHFVQRKSFADVHEALER   40 (160)
Q Consensus        19 fcfvshfvqrksfadvhealer   40 (160)
                      |||+-.|-||  ||-+-+++-+
T Consensus       191 ~~~~y~~r~r--~~~~~~~~~~  210 (243)
T 3d1c_A          191 LCYIYKFRAR--FAVLAHLLTQ  210 (243)
T ss_dssp             CCSHHHHGGG--HHHHHHHHHH
T ss_pred             EEEEHHHHHH--HHHHHHHHHC
T ss_conf             8977367999--9999999740


Done!