Query gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 160 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 21:15:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781083.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3fse_A Two-domain protein con 60.5 7.5 0.00022 19.7 2.8 43 77-121 107-149 (159) 2 >1h2v_C 80 kDa nuclear CAP bin 24.3 55 0.0016 14.8 5.6 54 16-70 61-114 (130) 3 >2uz8_A Eukaryotic translation 23.9 18 0.00054 17.5 -0.1 24 117-140 36-59 (60) 4 >1ffk_F Ribosomal protein L10E 20.5 56 0.0017 14.7 1.8 49 86-135 47-95 (157) 5 >3dc8_A Dihydropyrimidinase; T 15.8 47 0.0014 15.1 0.6 28 115-142 198-225 (323) 6 >3k63_A Conserved hypothetical 11.5 61 0.0018 14.5 0.1 24 112-135 50-73 (126) 7 >3bwx_A Alpha/beta hydrolase; 10.6 1.2E+02 0.0035 12.8 1.4 37 30-67 1-37 (58) 8 >3kfa_A V-ABL, tyrosine-protei 10.4 1.2E+02 0.0037 12.8 1.5 13 28-40 70-82 (102) 9 >2hl0_A Threonyl-tRNA syntheta 10.3 96 0.0028 13.4 0.8 16 116-132 69-84 (143) 10 >3d1c_A Flavin-containing puta 10.1 1.1E+02 0.0031 13.1 0.9 20 19-40 191-210 (243) No 1 >>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} (A:207-365) Probab=60.52 E-value=7.5 Score=19.70 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCC Q ss_conf 765465333225999999875677865666667986440220821 Q gi|254781083|r 77 LDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPS 121 (160) Q Consensus 77 ldqdlqdvesievfeylktrlsdleahrrsmsfyfakypkkvgps 121 (160) |-..+.|--+..+|+-....|+..| .|-.+.|-+.-+..+-|. T Consensus 107 Lc~q~TDP~t~~if~~Ie~dL~~~E--qrLa~LYR~R~g~~v~PP 149 (159) T 3fse_A 107 LCAXYTDPIATAIFKEIYKDLVKYE--QRLVSLYRTRTNATVQPP 149 (159) T ss_dssp HTTTCSCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHSCSSC T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCC T ss_conf 9988748517778888864446789--999999873268888999 No 2 >>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} (C:465-594) Probab=24.25 E-value=55 Score=14.78 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=34.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 9999999999711216889999999999998746668885113456677766433 Q gi|254781083|r 16 ILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSER 70 (160) Q Consensus 16 ilvfcfvshfvqrksfadvhealerykkvarvvgphipnsnvfsssvrrtywser 70 (160) |-||--.--++.-|||..+--+++||+.+-+-+++---.....-.+|- .||... T Consensus 61 i~vfvqtll~~GSKSfSH~~~~l~ry~~~lk~l~~~~e~q~~il~~v~-~~W~~~ 114 (130) T 1h2v_C 61 IEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMF-EVWRNH 114 (130) T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHTHHHHHHHTSSHHHHHHHHHHHH-HHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH-HHHHCC T ss_conf 179999999999876101588999999999987535677432025499-998347 No 3 >>2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear protein, RNA-binding protein; HET: MSE; 2.0A {Homo sapiens} (A:1-60) Probab=23.88 E-value=18 Score=17.51 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=19.6 Q ss_pred HCCCCCHHEECCCHHHHHHHHCCC Q ss_conf 208210101143034312220000 Q gi|254781083|r 117 KVGPSVIDVVYPHSHLVKEDKVDE 140 (160) Q Consensus 117 kvgpsvidvvyphshlvkedkvde 140 (160) .-||+....+--.+|||||.+-++ T Consensus 36 N~GP~L~Gl~TIA~HLVkea~k~~ 59 (60) T 2uz8_A 36 NNGPSLXGLTTIAAHLVKQANKEY 59 (60) T ss_dssp SSCCEEESHHHHHHHHHHHTTCGG T ss_pred CCCCEEECHHHHHHHHHHHCCCCC T ss_conf 487236332999999999726755 No 4 >>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (F:) Probab=20.47 E-value=56 Score=14.71 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHEECCCHHHHHH Q ss_conf 22599999987567786566666798644022082101011430343122 Q gi|254781083|r 86 SIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKE 135 (160) Q Consensus 86 sievfeylktrlsdleahrrsmsfyfakypkkvgpsvidvvyphshlvke 135 (160) .+-..|.-.-+-..|||-|..+.=|..+--.+.+-.+.-.+||| |.+++ T Consensus 47 ~L~a~e~~qI~~~alEAaR~ai~r~l~k~~G~~~f~~~irvfP~-~v~rk 95 (157) T 1ffk_F 47 ENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPF-HVIRE 95 (157) T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-CCCCC T ss_conf 99986553015999999999999876664276631899995898-53224 No 5 >>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} (A:52-327,A:444-490) Probab=15.81 E-value=47 Score=15.14 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=16.8 Q ss_pred HHHCCCCCHHEECCCHHHHHHHHCCCCC Q ss_conf 0220821010114303431222000014 Q gi|254781083|r 115 PKKVGPSVIDVVYPHSHLVKEDKVDEKN 142 (160) Q Consensus 115 pkkvgpsvidvvyphshlvkedkvdekn 142 (160) -|+-|..|---+-||.-+..++.+.+++ T Consensus 198 ak~~G~~Vt~Ev~phhL~l~~~~~~~~~ 225 (323) T 3dc8_A 198 ARAKGMRVFGEPLIQHLTLDETEYFDKD 225 (323) T ss_dssp HHHTTCCEEECCBHHHHHCCGGGGGCSC T ss_pred HHHCCCEEEECCCHHHHCCHHHHHHCCC T ss_conf 7524853653121111020255542234 No 6 >>3k63_A Conserved hypothetical membrane lipoprotein; Q9PRA0, PF04200, DUF1976, UUR17A, NESG., structural genomics, PSI-2, protein structure initiative; 2.49A {Ureaplasma parvum} PDB: 3jvc_A (A:) Probab=11.49 E-value=61 Score=14.49 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=19.2 Q ss_pred HHCHHHCCCCCHHEECCCHHHHHH Q ss_conf 644022082101011430343122 Q gi|254781083|r 112 AKYPKKVGPSVIDVVYPHSHLVKE 135 (160) Q Consensus 112 akypkkvgpsvidvvyphshlvke 135 (160) -||..+++-+||||.||....--. T Consensus 50 ~k~~dki~ikVi~Vlyp~~~~~sA 73 (126) T 3k63_A 50 HKYQNELDIKIINFLYPDGDFGSA 73 (126) T ss_dssp CSCTTTEEEEEEEEECTTSSHHHH T ss_pred HHCCCCCCEEEEEEEECCCCCCCC T ss_conf 411252260899988468983343 No 7 >>3bwx_A Alpha/beta hydrolase; YP_496220.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Novosphingobium aromaticivorans DSM12444} (A:151-208) Probab=10.64 E-value=1.2e+02 Score=12.85 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 16889999999999998746668885113456677766 Q gi|254781083|r 30 SFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYW 67 (160) Q Consensus 30 sfadvhealerykkvarvvgphipnsnvfsssvrrtyw 67 (160) ||++.-||....+.+....|||..... ...-.++++. T Consensus 1 sF~t~~ea~~~lr~i~~~fgP~lt~~q-W~~~a~~~~r 37 (58) T 3bwx_A 1 NFETWXHAARALQESSGDVYPDWDITQ-WLRYAKRIXV 37 (58) T ss_dssp EESSHHHHHHHHHHHHTTTSTTCCHHH-HHHHHHHHEE T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHH T ss_conf 103578999999975211221022788-8887654310 No 8 >>3kfa_A V-ABL, tyrosine-protein kinase transforming protein ABL; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene; HET: B91; 1.22A {Abelson murine leukemia virus} PDB: 2qoh_A* 3kf4_A* 1opj_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 3ik3_A* 2z60_A* 2e2b_A* 2g1t_A* 2hiw_A* 2v7a_A* 2f4j_A* 2g2h_A* 2g2f_A* 2g2i_A* 3dk6_A* 3dk3_A* 2hyy_A* ... (A:92-159,A:255-288) Probab=10.41 E-value=1.2e+02 Score=12.76 Aligned_cols=13 Identities=54% Similarity=0.948 Sum_probs=6.4 Q ss_pred HHHHHHHHHHHHH Q ss_conf 1216889999999 Q gi|254781083|r 28 RKSFADVHEALER 40 (160) Q Consensus 28 rksfadvhealer 40 (160) |.|||..|.|.|. T Consensus 70 ~~~~~~~~~~~~~ 82 (102) T 3kfa_A 70 RPSFAEIHQAFET 82 (102) T ss_dssp SCCHHHHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 9399999999999 No 9 >>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 2hl1_A* (A:) Probab=10.32 E-value=96 Score=13.39 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=0.0 Q ss_pred HHCCCCCHHEECCCHHH Q ss_conf 22082101011430343 Q gi|254781083|r 116 KKVGPSVIDVVYPHSHL 132 (160) Q Consensus 116 kkvgpsvidvvyphshl 132 (160) ++++...| |+||..|| T Consensus 69 ~kv~~~~i-vlYPyAHL 84 (143) T 2hl0_A 69 EQVKAENV-FVYPFAHL 84 (143) T ss_dssp HHHTCCEE-EEEECGGG T ss_pred HHCCCCEE-EEECCHHC T ss_conf 85399779-99360220 No 10 >>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, structural genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} (A:1-145,A:272-369) Probab=10.10 E-value=1.1e+02 Score=13.14 Aligned_cols=20 Identities=30% Similarity=0.700 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999711216889999999 Q gi|254781083|r 19 FCFVSHFVQRKSFADVHEALER 40 (160) Q Consensus 19 fcfvshfvqrksfadvhealer 40 (160) |||+-.|-|| ||-+-+++-+ T Consensus 191 ~~~~y~~r~r--~~~~~~~~~~ 210 (243) T 3d1c_A 191 LCYIYKFRAR--FAVLAHLLTQ 210 (243) T ss_dssp CCSHHHHGGG--HHHHHHHHHH T ss_pred EEEEHHHHHH--HHHHHHHHHC T ss_conf 8977367999--9999999740 Done!