RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781083|ref|YP_003065496.1| hypothetical protein
CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 32.4 bits (73), Expect = 0.032
 Identities = 15/138 (10%), Positives = 42/138 (30%), Gaps = 27/138 (19%)

Query: 4   LSVTWNDLVQVSILVFCFVSHFVQRKSFADVHEALERYKKVAR-VVGP------HIPNSN 56
           L+ +     Q+  +V     +   + +F       +  K  A+ V+G        +    
Sbjct: 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQ 254

Query: 57  VFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPK 116
           + +  ++     E  ++++           I            L  + + + F  A + +
Sbjct: 255 LDARDIKVFVLDEADNMLDQQGLG-DQSMRI---------KHLLPRNTQIVLFS-ATFSE 303

Query: 117 KV---------GPSVIDV 125
           +V           + I +
Sbjct: 304 RVEKYAERFAPNANEIRL 321


>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis,
           3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans}
           PDB: 3cm5_A 3cm6_A (A:)
          Length = 308

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 4/41 (9%), Positives = 9/41 (21%), Gaps = 5/41 (12%)

Query: 70  RGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFY 110
               ++      Q     +    L     D     +   +Y
Sbjct: 273 CRKGMDVCGTSHQ-----QTPHDLYKNEEDPIHFAKIAGYY 308


>3bwx_A Alpha/beta hydrolase; YP_496220.1, structural genomics,
          joint center for structural genomics, JCSG; HET: MSE;
          1.50A {Novosphingobium aromaticivorans DSM12444}
          (A:151-208)
          Length = 58

 Score = 24.3 bits (53), Expect = 7.5
 Identities = 4/22 (18%), Positives = 8/22 (36%)

Query: 30 SFADVHEALERYKKVARVVGPH 51
          +F     A    ++ +  V P 
Sbjct: 1  NFETWXHAARALQESSGDVYPD 22


>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; methionine, synthase,
           methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis
           thaliana} (A:430-487,A:682-765)
          Length = 142

 Score = 24.3 bits (53), Expect = 8.5
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 106 SMSFYFAKYPKKVGPSVIDVVYPH 129
            +     KY   +GP V D+  P 
Sbjct: 58  VVFREGVKYGAGIGPGVYDIHSPR 81


>2nwu_A UPF0201 protein SSO1042; conserved hypothetical protein,
           structural genomics, PSI-2, protein structure
           initiative; 2.40A {Sulfolobus solfataricus P2} (A:)
          Length = 155

 Score = 24.3 bits (53), Expect = 8.9
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 22/121 (18%)

Query: 32  ADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFE 91
           A+V    E   KV   +      SN F         + +  II+ L  + + ++S+  F 
Sbjct: 10  AEVR-PSEDVNKVLSAI------SNFFDFEKXN---TRKEGIIDILVLEARTLKSLLKFH 59

Query: 92  YLKTRLSDLEAHRRSM-------SFYF-----AKYPKKVGPSVIDVVYPHSHLVKEDKVD 139
            +      L++ R+ +       +  F     A     +     D   P   +    +  
Sbjct: 60  RVLRNERILDSARKYLXKGIEGNTIAFXIHKQAAAVGVLSFVDSDKESPLGAIKFYIEYQ 119

Query: 140 E 140
            
Sbjct: 120 N 120


>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein,
          structural genomics, PSI, protein structure initiative;
          1.80A {Archaeoglobus fulgidus dsm 4304} (A:)
          Length = 177

 Score = 24.0 bits (51), Expect = 9.7
 Identities = 3/31 (9%), Positives = 9/31 (29%)

Query: 18 VFCFVSHFVQRKSFADVHEALERYKKVARVV 48
           +  V+     K      E  ++ +     +
Sbjct: 25 FWLSVNRIYPEKRIELQLEVFKKLQDEKLYI 55


>2w19_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AROG;
           transferase isomerase complex, aromatic amino acid
           biosynthesis, multi-enzyme complex; 2.15A {Mycobacterium
           tuberculosis} PDB: 2w1a_A* 2b7o_A* (A:)
          Length = 472

 Score = 24.0 bits (52), Expect = 9.9
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 43  KVARVVGPHI-PNSNVFSSSVRRTYWSERGDIINALDQD 80
           KVAR+ G +  P S    +       S RGD+IN    D
Sbjct: 133 KVARIAGQYAKPRSADIDA---LGLRSYRGDMINGFAPD 168


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,189,725
Number of extensions: 49048
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 9
Length of query: 160
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 78
Effective length of database: 2,184,039
Effective search space: 170355042
Effective search space used: 170355042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)