RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781083|ref|YP_003065496.1| hypothetical protein
CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 33.0 bits (74), Expect = 0.034
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 20/83 (24%)

Query: 74  INALDQDLQDVESIEVF-EYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHL 132
           I   D+  Q+ ESI  + E  + RL +L+A  + M     ++ +K               
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRLQELDAASKVME---QEWREKA-------------- 116

Query: 133 VKEDKVDEKNSSSELKVDLNKLN 155
            K+D ++E N     +V+ NK+N
Sbjct: 117 -KKD-LEEWNQRQSEQVEKNKIN 137


>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; TIM barrel, methyltetrahydrofolate,
           zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A
           1xdj_A 1xr2_A* 1xpg_A*
          Length = 766

 Score = 31.4 bits (71), Expect = 0.11
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 67  WSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVV 126
           +S+  +II  + Q   DV SIE     +++   + A        F  + K++G  V D+ 
Sbjct: 653 YSDFNEIIEYIHQLEFDVISIE---ASRSKGEIISAFEN-----FKGWIKQIGVGVWDIH 704

Query: 127 YP 128
            P
Sbjct: 705 SP 706


>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; structural genomics, target 6426D,
           PSI; 1.90A {Streptococcus mutans}
          Length = 755

 Score = 30.3 bits (68), Expect = 0.19
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 32  ADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFE 91
           +     L+       +    + +     + +    +S+  +II+A+     DV SIE   
Sbjct: 603 SKQKAYLDDAVHAFHIATSSVKDETQIHTHM---CYSKFDEIIDAIRALDADVISIE--- 656

Query: 92  YLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPH 129
             ++    +E+      F  A YP  +G  V D+  P 
Sbjct: 657 TSRSHGDIIES------FETAVYPLGIGLGVYDIHSPR 688


>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; methionine, synthase,
           methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis
           thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A
           1u22_A*
          Length = 765

 Score = 29.9 bits (67), Expect = 0.30
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 67  WSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDV 125
           +S   DII+++     D + I   E  ++    L   R        KY   +GP V D+
Sbjct: 650 YSHFNDIIHSIID--MDADVIT-IENSRSDEKLLSVFRE-----GVKYGAGIGPGVYDI 700


>3hh9_A Spermidine synthase; aminopropyltransferase, polyamine synthase,
           rossmann fold, polyamine biosynthesis, spermidine
           biosynthesis, transferase; 2.85A {Escherichia coli}
          Length = 294

 Score = 26.6 bits (58), Expect = 2.9
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 16  ILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERGDIIN 75
           I V      F+Q++   D H  L  Y          IP    +   +    W+   D + 
Sbjct: 193 IFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIP---TYYGGIMTFAWATDNDALR 249

Query: 76  ALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKK 117
            L  ++     +     LK R  +   H    +F   +Y + 
Sbjct: 250 HLSTEIIQARFLA--SGLKCRYYNPAIHTA--AFALPQYLQD 287


>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
           enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
           SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
           1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
           1k62_A
          Length = 468

 Score = 26.3 bits (57), Expect = 2.9
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 25  FVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSSS------VRRTYWSERGDIINALD 78
           FV ++S  D+H A ER   +  ++G      +   S         + +      II+   
Sbjct: 81  FVVKQSDEDIHTANERR--LKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHL 138

Query: 79  QDLQDVESIEVFEYLKT 95
             L           +  
Sbjct: 139 LQLIKTLVERAAIEIDV 155


>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation,
           transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A*
           2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
          Length = 394

 Score = 26.2 bits (57), Expect = 3.2
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 50  PHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMS 108
           P    S      V+  Y     DI+  LD+D +D  ++  F      +     H   + 
Sbjct: 59  PDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTI--RNRHNDVVP 115


>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid
           ribonucleotidohydrolase; 2.00A {Pyrococcus horikoshii
           OT3} SCOP: c.55.3.1
          Length = 220

 Score = 26.0 bits (56), Expect = 4.1
 Identities = 4/16 (25%), Positives = 10/16 (62%)

Query: 28  RKSFADVHEALERYKK 43
           R+++    +  ER++K
Sbjct: 195 RRTWETARKIEERFRK 210


>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding,
           structural genomics, NPPSFA; HET: ANP; 1.86A {Homo
           sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
          Length = 394

 Score = 25.8 bits (56), Expect = 4.9
 Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 50  PHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMS 108
           P    +      V+  Y     D++   ++   D +++   +++ T +     H   + 
Sbjct: 59  PTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALS--DFVDTLIKVRNRHHNVVP 115


>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural
          genomics, NPPSFA, national project on protein
          structural and functional analyses; NMR {Homo sapiens}
          Length = 119

 Score = 24.8 bits (54), Expect = 9.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 24 HFVQRKSFADVHEALERYKKVARVVGP 50
          H+VQ K F  +  A+  +    +V GP
Sbjct: 10 HYVQDKLFVGLEHAVPTFNVKEKVEGP 36


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,342,968
Number of extensions: 57401
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 19
Length of query: 160
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 75
Effective length of database: 3,632,490
Effective search space: 272436750
Effective search space used: 272436750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)